BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00003307
         (1320 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020257000.1| DNA-directed RNA polymerase I subunit rpa49 ...   555   0.0  
gb|ONK75163.1| uncharacterized protein A4U43_C03F14010 [Asparagu...   493   e-170
ref|XP_008783442.1| PREDICTED: DNA-directed RNA polymerase I sub...   344   e-111
ref|XP_010937236.1| PREDICTED: DNA-directed RNA polymerase I sub...   343   e-111
gb|OAY81587.1| DNA-directed RNA polymerase I subunit rpa49 [Anan...   343   e-111
ref|XP_020100940.1| DNA-directed RNA polymerase I subunit rpa49 ...   342   e-111
ref|XP_009386771.1| PREDICTED: uncharacterized protein LOC103973...   340   e-110
ref|XP_020587407.1| DNA-directed RNA polymerase I subunit rpa49 ...   331   e-106
ref|XP_020673334.1| DNA-directed RNA polymerase I subunit rpa49 ...   319   e-102
ref|XP_020673335.1| DNA-directed RNA polymerase I subunit rpa49 ...   307   1e-97
ref|XP_010273794.1| PREDICTED: DNA-directed RNA polymerase I sub...   278   5e-86
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   276   3e-85
emb|CBI35920.3| unnamed protein product, partial [Vitis vinifera]     274   7e-85
gb|KMZ63406.1| DNA-directed RNA polymerase I subunit rpa49 [Zost...   272   2e-82
ref|XP_022736064.1| DNA-directed RNA polymerase I subunit RPA49 ...   268   1e-81
ref|XP_007039490.2| PREDICTED: DNA-directed RNA polymerase I sub...   263   1e-79
ref|XP_021276274.1| DNA-directed RNA polymerase I subunit rpa49 ...   262   1e-79
gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, puta...   263   1e-79
ref|XP_006426597.1| DNA-directed RNA polymerase I subunit RPA49 ...   262   2e-79
ref|XP_006465974.1| PREDICTED: DNA-directed RNA polymerase I sub...   262   2e-79

>ref|XP_020257000.1| DNA-directed RNA polymerase I subunit rpa49 [Asparagus officinalis]
          Length = 434

 Score =  555 bits (1429), Expect = 0.0
 Identities = 289/433 (66%), Positives = 335/433 (77%), Gaps = 32/433 (7%)
 Frame = +3

Query: 27   MADSDNEMQS--RTEXXXXXXXXX---VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPP 191
            MADSD +++S  RT+            VE S L D PDRIAPVVGYFSSGYNPCDS++PP
Sbjct: 1    MADSDLDVESNHRTKSERRRKNKRSLNVETSYLADNPDRIAPVVGYFSSGYNPCDSQEPP 60

Query: 192  EVRVFRHKQHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVV 371
            EVRV R++ HRSSRLDLVV+P+ S+VEFVG+SYEGEAAVHQPCHYALG+LDKD+QTLKVV
Sbjct: 61   EVRVLRNRNHRSSRLDLVVKPKESSVEFVGRSYEGEAAVHQPCHYALGILDKDSQTLKVV 120

Query: 372  PIAAXXXX------------------------EGN--RRISDLTSLYGTKRQRKMDKKMR 473
            PIAA                            +GN  R+ISDLTSLYGTK+QR MDKK+R
Sbjct: 121  PIAANKIFRLEPRVMKSPSVEEASEVLEGRVDDGNTRRKISDLTSLYGTKKQRNMDKKLR 180

Query: 474  LLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEII 653
            LL +QTN+PSARE L DEML  D N+EAL+DTKAT GPNIPPHDLSAVTPE AYLLDEII
Sbjct: 181  LLAQQTNDPSARENLPDEMLNVDMNDEALKDTKATIGPNIPPHDLSAVTPEKAYLLDEII 240

Query: 654  LKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSY 833
             KGERDYLFDIL L +SGIGE   +WEENYYP FVVNRI               AFILSY
Sbjct: 241  QKGERDYLFDILDLLNSGIGEKPKYWEENYYPSFVVNRIPKLKEVQNEEEKKKLAFILSY 300

Query: 834  ITHLVNFWKLAASSRR-KSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKEL 1010
            ITHLVNFWKLAAS+RR KSQ+++ GDAINKYKIPR++YQKF +LF+DP+S VL + KKEL
Sbjct: 301  ITHLVNFWKLAASNRRSKSQSSISGDAINKYKIPRIVYQKFEQLFIDPASKVLSSYKKEL 360

Query: 1011 VIGYILVLTLFADRFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVP 1190
            VIGYILVLTLFAD+FS+SPSDI+KDLGM+ +D+RLYY QLGCKLS ++R G+  WTLPVP
Sbjct: 361  VIGYILVLTLFADKFSSSPSDISKDLGMSVSDLRLYYTQLGCKLSNKARFGEVFWTLPVP 420

Query: 1191 LKFTELKMRRKQK 1229
            LK  ++K RRK+K
Sbjct: 421  LKSADMKKRRKRK 433


>gb|ONK75163.1| uncharacterized protein A4U43_C03F14010 [Asparagus officinalis]
          Length = 403

 Score =  493 bits (1270), Expect = e-170
 Identities = 261/387 (67%), Positives = 298/387 (77%), Gaps = 32/387 (8%)
 Frame = +3

Query: 27   MADSDNEMQS--RTEXXXXXXXXX---VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPP 191
            MADSD +++S  RT+            VE S L D PDRIAPVVGYFSSGYNPCDS++PP
Sbjct: 1    MADSDLDVESNHRTKSERRRKNKRSLNVETSYLADNPDRIAPVVGYFSSGYNPCDSQEPP 60

Query: 192  EVRVFRHKQHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVV 371
            EVRV R++ HRSSRLDLVV+P+ S+VEFVG+SYEGEAAVHQPCHYALG+LDKD+QTLKVV
Sbjct: 61   EVRVLRNRNHRSSRLDLVVKPKESSVEFVGRSYEGEAAVHQPCHYALGILDKDSQTLKVV 120

Query: 372  PIAAXXXX------------------------EGN--RRISDLTSLYGTKRQRKMDKKMR 473
            PIAA                            +GN  R+ISDLTSLYGTK+QR MDKK+R
Sbjct: 121  PIAANKIFRLEPRVMKSPSVEEASEVLEGRVDDGNTRRKISDLTSLYGTKKQRNMDKKLR 180

Query: 474  LLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEII 653
            LL +QTN+PSARE L DEML  D N+EAL+DTKAT GPNIPPHDLSAVTPE AYLLDEII
Sbjct: 181  LLAQQTNDPSARENLPDEMLNVDMNDEALKDTKATIGPNIPPHDLSAVTPEKAYLLDEII 240

Query: 654  LKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSY 833
             KGERDYLFDIL L +SGIGE   +WEENYYP FVVNRI               AFILSY
Sbjct: 241  QKGERDYLFDILDLLNSGIGEKPKYWEENYYPSFVVNRIPKLKEVQNEEEKKKLAFILSY 300

Query: 834  ITHLVNFWKLAASSRR-KSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKEL 1010
            ITHLVNFWKLAAS+RR KSQ+++ GDAINKYKIPR++YQKF +LF+DP+S VL + KKEL
Sbjct: 301  ITHLVNFWKLAASNRRSKSQSSISGDAINKYKIPRIVYQKFEQLFIDPASKVLSSYKKEL 360

Query: 1011 VIGYILVLTLFADRFSTSPSDIAKDLG 1091
            VIGYILVLTLFAD+FS+SPSDI+KDLG
Sbjct: 361  VIGYILVLTLFADKFSSSPSDISKDLG 387


>ref|XP_008783442.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Phoenix
            dactylifera]
          Length = 430

 Score =  344 bits (882), Expect = e-111
 Identities = 205/441 (46%), Positives = 264/441 (59%), Gaps = 40/441 (9%)
 Frame = +3

Query: 27   MADSDNEMQSRTEXXXXXXXXXVEMSALTDTPDRIAPVVGYFSSGYNPCDSE----QPPE 194
            M   +  ++ RT          VEM  L++T DRIAP+VGYF SGY+P ++       P 
Sbjct: 1    MLAMEEAVEGRTASTKKRKRVEVEMEVLSETTDRIAPIVGYFPSGYDPHNAAFAAAGSPS 60

Query: 195  VRVFRHKQHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVP 374
            VRVFR+++H SSRL+LVV P+ SNVEFVG SY GEAA  Q C Y LGVLDK+TQTLK++P
Sbjct: 61   VRVFRNQRH-SSRLELVVSPRESNVEFVGTSYSGEAAGPQLCTYTLGVLDKETQTLKILP 119

Query: 375  IAAXXXX--------------------------EGN--RRISDLTSLYGTKRQRKMDKKM 470
            IAA                              EG   R+I+DLT+LYGTK+ R  D + 
Sbjct: 120  IAANKIFRLEPRLTKNLSADTEPSEGLAEEGLAEGKVERKIADLTNLYGTKKDRDKDNRW 179

Query: 471  RLLVEQTNNPSAREQLQDEML-----KTDTNNEALEDTKATTGPNIPPHDLSAVTPENAY 635
            RLL +Q N+PS +EQL +E L       D +NEA ED K    PNIPPHD SA TPE AY
Sbjct: 180  RLLNQQRNDPSTQEQLANENLGGGGDDDDVDNEAPEDVKEAAVPNIPPHDRSANTPEKAY 239

Query: 636  LLDEIILKGERDYLFDILGLFDSGIGENSTFWEE---NYYPCFVVNRIHXXXXXXXXXXX 806
            LLDEI+ + ER YL DIL        EN  + E+     YP FV NRIH           
Sbjct: 240  LLDEIMPRAERAYLLDIL--------ENLQYGEDLASKSYPAFVYNRIHKLREVQDDKEK 291

Query: 807  XXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNV 986
               A ILSYITHL  FW     S+ K++    G      KIPR+IYQK +++F++P S++
Sbjct: 292  EKLACILSYITHLHAFWGRIRFSKHKAR--FVGMTAGGPKIPRIIYQKLLRMFVNPDSDL 349

Query: 987  LPTDKKELVIGYILVLTLFADRFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGK 1166
            +  +KKEL+IGYILVLTLF D+F + PSDIA+DL MT   ++ YYLQLGCKL +++   +
Sbjct: 350  VSMEKKELLIGYILVLTLFVDKFHSDPSDIARDLKMTVHSLKPYYLQLGCKLFQDAAFQQ 409

Query: 1167 RLWTLPVPLKFTELKMRRKQK 1229
               TLPVPL+F E +  R+++
Sbjct: 410  AFMTLPVPLQFPESRRNRRRR 430


>ref|XP_010937236.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Elaeis
            guineensis]
          Length = 425

 Score =  343 bits (880), Expect = e-111
 Identities = 205/435 (47%), Positives = 261/435 (60%), Gaps = 38/435 (8%)
 Frame = +3

Query: 39   DNEMQSRTEXXXXXXXXXVEMSALTDTPDRIAPVVGYFSSGYNPCDSEQP----PEVRVF 206
            ++ ++ RTE         VEM  L++T DRIAP+VGYF SGY+P ++       P VRVF
Sbjct: 2    EDAVEGRTESKKKRKRVEVEMEVLSETTDRIAPIVGYFPSGYDPHNAASAAAGGPSVRVF 61

Query: 207  RHKQHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAX 386
            R++ + SSRL+LVV P+ SNVEFVG SY GEAA  Q C Y LGVLDK+T TLK+VPIAA 
Sbjct: 62   RNQMY-SSRLELVVSPRDSNVEFVGTSYSGEAAGPQLCTYTLGVLDKETHTLKIVPIAAN 120

Query: 387  XXX--------------------------EGN--RRISDLTSLYGTKRQRKMDKKMRLLV 482
                                         EG   R+I+DLT+LYGTK+ R  D + R L 
Sbjct: 121  KIFRLEPRLTKNLSTDTEPSEGLAEEGLAEGKVERKIADLTNLYGTKKDRDKDNRWRSLN 180

Query: 483  EQTNNPSAREQLQDEML---KTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEII 653
            +Q N+PSAREQL  E       D +NE+ ED K    PNIPPHD SA T E AYLLDEII
Sbjct: 181  QQRNDPSAREQLASENPGGDDDDIDNESHEDVKEAAVPNIPPHDRSANTSEKAYLLDEII 240

Query: 654  LKGERDYLFDILGLFDSGIGENSTFWEE---NYYPCFVVNRIHXXXXXXXXXXXXXQAFI 824
             K ER YL DIL        EN  + E+     YP FV NRIH              A I
Sbjct: 241  PKAERPYLLDIL--------ENLQYGEDLASKSYPTFVYNRIHKLREIQDDKEKEKLACI 292

Query: 825  LSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKK 1004
            LSYITHL  FW+    S+ K++    G   +  KIPR+IYQK V++F++P S+++  +KK
Sbjct: 293  LSYITHLHTFWERIRFSKHKAK--FLGMTADAPKIPRIIYQKVVRMFVNPESDIVSMEKK 350

Query: 1005 ELVIGYILVLTLFADRFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLP 1184
            EL+IGYILVLTLFAD+F + PSDIA+DL MT   ++ Y+LQLGCK+  E    +   TLP
Sbjct: 351  ELLIGYILVLTLFADKFRSDPSDIARDLKMTVHSLKPYFLQLGCKIFHEGAFQQSFMTLP 410

Query: 1185 VPLKFTELKMRRKQK 1229
            VPL+F E +  R+++
Sbjct: 411  VPLQFPEHRRNRRRR 425


>gb|OAY81587.1| DNA-directed RNA polymerase I subunit rpa49 [Ananas comosus]
          Length = 430

 Score =  343 bits (880), Expect = e-111
 Identities = 200/414 (48%), Positives = 254/414 (61%), Gaps = 36/414 (8%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCD--------SEQPPEVRVFRHKQHRSSRLDLVV 248
            V M AL ++ DRIAPVVGYF SGY+P          +   P VRVFR+K+ R++RL+LVV
Sbjct: 25   VSMEALAESGDRIAPVVGYFPSGYDPLGGGAADPAAAADDPSVRVFRNKR-RANRLELVV 83

Query: 249  RPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA--------------- 383
             P+GS VEFVG+SY GEAA  Q C YALGVLDK TQTLK+VPIAA               
Sbjct: 84   SPRGSAVEFVGRSYAGEAAAPQLCTYALGVLDKATQTLKIVPIAANKIFRLEPRLAVSQP 143

Query: 384  --XXXXEG-----------NRRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQD 524
                  EG            R+I DLTS+YGTK+ R  DKK   L +Q N+PSA E L++
Sbjct: 144  AHMEASEGLTEESMATGQVGRKIQDLTSMYGTKKDRDKDKKWMSLNQQRNDPSAYEHLEN 203

Query: 525  EMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDS 704
            E    D +N A +    +T  NIPPH+ SA TPE AYL+DEII KGER YL DIL    S
Sbjct: 204  EKTDADVDNNAADQETESTPRNIPPHNPSADTPERAYLIDEIIPKGERAYLLDILEALHS 263

Query: 705  GIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRK 884
            G+       +   YP FV NR++              A +LSYITHL +FW+  +SS RK
Sbjct: 264  GVD-----LDLKPYPSFVSNRLYKLRELQDEEEKEKLACMLSYITHLQSFWERLSSSGRK 318

Query: 885  SQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTS 1064
            S+   +    +  KIPR+ YQ+  ++F+DP S++L T K EL+IGYILVLTLF D F T 
Sbjct: 319  SKH--HSKPADHSKIPRITYQRLQRMFVDPESHLLSTQKNELLIGYILVLTLFVDNFKTD 376

Query: 1065 PSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQ 1226
            P+D+A+DL MT   +R YY QLGCK+S+E+   + L TLP PLKF EL+ RR++
Sbjct: 377  PTDVARDLKMTIQTLRPYYQQLGCKISRENFSEQSLVTLPAPLKFPELRRRRRR 430


>ref|XP_020100940.1| DNA-directed RNA polymerase I subunit rpa49 [Ananas comosus]
          Length = 430

 Score =  342 bits (878), Expect = e-111
 Identities = 201/414 (48%), Positives = 254/414 (61%), Gaps = 36/414 (8%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCD--------SEQPPEVRVFRHKQHRSSRLDLVV 248
            V M AL ++ DRIAPVVGYF SGY+P          +   P VRVFR+K+ R++RL+LVV
Sbjct: 25   VSMEALAESGDRIAPVVGYFPSGYDPLGGGAAAPAAAADDPSVRVFRNKR-RANRLELVV 83

Query: 249  RPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA--------------- 383
             P+GS VEFVG+SY GEAA  Q C YALGVLDK TQTLK+VPIAA               
Sbjct: 84   SPRGSAVEFVGRSYAGEAAAPQLCTYALGVLDKATQTLKIVPIAANKIFRLEPRLAVSQP 143

Query: 384  --XXXXEG-----------NRRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQD 524
                  EG            R+I DLTSLYGTK+ R  DKK   L +Q N+PSA E L++
Sbjct: 144  AHMEASEGLTEESMATGQVGRKIQDLTSLYGTKKDRDKDKKWMSLNQQRNDPSAYEHLEN 203

Query: 525  EMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDS 704
            E    D +N A +    +T  NIPPH+ SA TPE AYL+DEII KGER YL DIL    S
Sbjct: 204  EKTDADVDNNAADQETESTPRNIPPHNPSADTPERAYLIDEIIPKGERAYLLDILEALHS 263

Query: 705  GIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRK 884
            G+       +   YP FV NR++              A +LSYITHL +FW+  +SS  K
Sbjct: 264  GVD-----LDLKPYPSFVSNRLYKLRELQDEEEKEKLACMLSYITHLQSFWERLSSSGCK 318

Query: 885  SQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTS 1064
            S+   +    +  KIPR+ YQ+  ++F+DP S++L T K EL+IGYILVLTLF D F T 
Sbjct: 319  SKH--HSKPADHSKIPRITYQRLQRMFVDPESHLLSTQKNELLIGYILVLTLFVDNFKTD 376

Query: 1065 PSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQ 1226
            P+D+A+DL MT   +R YY QLGCK+S+E+   + L TLPVPLKF EL+ RR++
Sbjct: 377  PTDVARDLKMTIQTLRPYYQQLGCKISRENFSEQSLVTLPVPLKFPELRRRRRR 430


>ref|XP_009386771.1| PREDICTED: uncharacterized protein LOC103973833 [Musa acuminata
            subsp. malaccensis]
          Length = 424

 Score =  340 bits (871), Expect = e-110
 Identities = 196/408 (48%), Positives = 251/408 (61%), Gaps = 28/408 (6%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 272
            VEM AL++  DR+APVVGYF SGY+P      P ++VFR+K+ R +RL+LVV P G+ V+
Sbjct: 24   VEMEALSEAADRVAPVVGYFPSGYDPRGEGADPSIKVFRNKK-RPNRLELVVSPSGTGVD 82

Query: 273  FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXXX------------------- 395
            FVGKSY GEAA  Q C YALGVLDK++QTL++VPIA+                       
Sbjct: 83   FVGKSYAGEAAGAQICSYALGVLDKESQTLRIVPIASNKILRLEPRLKMNPFADTEVSDG 142

Query: 396  ---------EGNRRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTN 548
                     +  R++ DLTSLYGTK+ R  D K R L++Q N+ SARE L++  L  D  
Sbjct: 143  LAEESIATSKTERKMVDLTSLYGTKKDRDKDNKWRSLIQQRNDSSAREHLENINLNADGE 202

Query: 549  NEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTF 728
            ++ LEDT  TT  NIPP+D SA TPE AYLLDEII KGER +L DIL    SG     T 
Sbjct: 203  SQVLEDTLETTTRNIPPYDASADTPEKAYLLDEIIPKGERVHLLDILDDLHSG-----TD 257

Query: 729  WEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGD 908
                 YP FV NR+H              A I SYI+HL NFW+ +  SR   ++A +  
Sbjct: 258  IPSKSYPSFVFNRMHKLREIQDEKEREKLACIFSYISHLQNFWERSRPSRH-FKSASHDK 316

Query: 909  AINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIAKDL 1088
            + +  KIPR++YQK +++FLD  SNVL T+K EL+IG+ILVLTLFAD F T PSDIA+DL
Sbjct: 317  STDHLKIPRIVYQKLLRMFLDRESNVLSTEKNELLIGHILVLTLFADCFQTDPSDIARDL 376

Query: 1089 GMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQKR 1232
             MT   ++ YY QLGCK+ +ES        L  PL+F E+  RR Q+R
Sbjct: 377  KMTVQTLKPYYQQLGCKIFRESPSAPMFMILNAPLQFPEI--RRTQRR 422


>ref|XP_020587407.1| DNA-directed RNA polymerase I subunit rpa49 [Phalaenopsis equestris]
          Length = 424

 Score =  331 bits (848), Expect = e-106
 Identities = 191/399 (47%), Positives = 250/399 (62%), Gaps = 26/399 (6%)
 Frame = +3

Query: 99   MSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVEFV 278
            M  L++T DR+AP+VGYF SGY+P  +   P+V V+R+K  + +RL+LVVRP   NVEFV
Sbjct: 26   MEVLSETGDRMAPIVGYFPSGYDPLAAGADPDVNVYRNKS-KPNRLELVVRPPDCNVEFV 84

Query: 279  GKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXXX---------EGNRR------- 410
            GKSY GEAA+ Q C YALGVLDK+TQTLK+VPIAA             +G R        
Sbjct: 85   GKSYAGEAAMPQLCTYALGVLDKETQTLKIVPIAANKILRLEPRLVNGDGERTEAGEEVI 144

Query: 411  --------ISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALED 566
                    +++LT LYGTK+ + +  K + +  + ++PS    L+    +++ N+EA +D
Sbjct: 145  IDENKEHPMAELTQLYGTKKAKMVASKWKSIKRKVDDPSVLGSLEVGT-ESNLNDEASKD 203

Query: 567  TKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDS--GIGENSTFWEEN 740
             +     NIPP+D SAVTP NAY L +IILKGER YL DIL    S    G NS FWEEN
Sbjct: 204  IEEPLVRNIPPYDASAVTPHNAYPLHKIILKGERSYLKDILETLKSEPNDGYNSKFWEEN 263

Query: 741  YYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINK 920
            +YPCFV++R++              A ILSYITHL+NF K+A S R KS    Y  A+++
Sbjct: 264  HYPCFVIHRLNKLRDMQDEAEKTQFASILSYITHLINFRKVAESVRWKSYRD-YDKAMSE 322

Query: 921  YKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIAKDLGMTT 1100
            + IP VI+ +F+ +FLDP SNVL + K +L+I YILVLTL AD F T  +DI KDL MT 
Sbjct: 323  FMIPNVIFHRFLSIFLDPISNVLSSTKSQLLISYILVLTLHADDFRTDSADIEKDLAMTR 382

Query: 1101 TDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMR 1217
              ++ YYLQLGC++ KE    K L TLPVPL F   K R
Sbjct: 383  ASLKPYYLQLGCQVYKEGPFKKSLMTLPVPLVFKAQKRR 421


>ref|XP_020673334.1| DNA-directed RNA polymerase I subunit rpa49 isoform X2 [Dendrobium
            catenatum]
          Length = 431

 Score =  319 bits (817), Expect = e-102
 Identities = 182/408 (44%), Positives = 250/408 (61%), Gaps = 28/408 (6%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 272
            +EM  L++T D++APVVGYF SGY+P  +   P++++FR+K+ + +RL+LVVRP   NVE
Sbjct: 24   LEMEVLSETADKMAPVVGYFPSGYDPVAAGADPDIKLFRNKK-KPNRLELVVRPDDCNVE 82

Query: 273  FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXXXEGNRR-------------- 410
            FVGKSY GEAA+ Q C YALGV+DK+TQTLK+ PIAA        R              
Sbjct: 83   FVGKSYAGEAALPQLCTYALGVVDKETQTLKIFPIAANKILRLEPRFINGFGEPTKVGEE 142

Query: 411  ----------ISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTD--TNNE 554
                      ++DL  LYGTKR + ++ + + + ++ N+PS    L+   + TD   N+E
Sbjct: 143  VIIDEKKKHPMADLNLLYGTKRSKIIESRRQSINKKLNDPSILGPLE---VGTDGNLNDE 199

Query: 555  ALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGL--FDSGIGENSTF 728
            A +D K     NIPP+D SAVTP++AY L+ II KGER YL DIL     +     N+ F
Sbjct: 200  ASKDIKEPLDRNIPPYDPSAVTPQSAYPLNNIIPKGERGYLKDILETLELEPDNARNAEF 259

Query: 729  WEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGD 908
            WE NYYP FV++R+               A ILSYITHL+NF K+A S RR+     Y +
Sbjct: 260  WESNYYPSFVIHRLSKLREIQDEEEKTQFACILSYITHLINFRKVAESVRRRKDKPDYAE 319

Query: 909  AINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIAKDL 1088
            A++K+ IP V++Q+F+ LFLDP SN++ ++K  L+I Y+LVLTL AD F T  +DI KDL
Sbjct: 320  AMSKFMIPSVVFQRFLTLFLDPVSNLISSEKSVLLICYVLVLTLHADDFLTDSTDIEKDL 379

Query: 1089 GMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQKR 1232
             +    ++ Y+LQLGCK        K   TLPVPL F  LK RR ++R
Sbjct: 380  AIARDSLKPYFLQLGCKTDNPKPFQKSRMTLPVPLVFQGLKKRRFRRR 427


>ref|XP_020673335.1| DNA-directed RNA polymerase I subunit rpa49 isoform X3 [Dendrobium
            catenatum]
          Length = 384

 Score =  307 bits (786), Expect = 1e-97
 Identities = 176/384 (45%), Positives = 239/384 (62%), Gaps = 4/384 (1%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 272
            +EM  L++T D++APVVGYF SGY+P  +   P++++FR+K+ + +RL+LVVRP   NVE
Sbjct: 24   LEMEVLSETADKMAPVVGYFPSGYDPVAAGADPDIKLFRNKK-KPNRLELVVRPDDCNVE 82

Query: 273  FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXXXEGNRRISDLTSLYGTKRQR 452
            FVGKSY GEAA+ Q C YALGV+DK+TQTLK+ PIAA                    R++
Sbjct: 83   FVGKSYAGEAALPQLCTYALGVVDKETQTLKIFPIAANKE----------------SRRQ 126

Query: 453  KMDKKMRLLVEQTNNPSAREQLQDEMLKTD--TNNEALEDTKATTGPNIPPHDLSAVTPE 626
             ++KK+       N+PS    L+   + TD   N+EA +D K     NIPP+D SAVTP+
Sbjct: 127  SINKKL-------NDPSILGPLE---VGTDGNLNDEASKDIKEPLDRNIPPYDPSAVTPQ 176

Query: 627  NAYLLDEIILKGERDYLFDILGLFD--SGIGENSTFWEENYYPCFVVNRIHXXXXXXXXX 800
            +AY L+ II KGER YL DIL   +       N+ FWE NYYP FV++R+          
Sbjct: 177  SAYPLNNIIPKGERGYLKDILETLELEPDNARNAEFWESNYYPSFVIHRLSKLREIQDEE 236

Query: 801  XXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLDPSS 980
                 A ILSYITHL+NF K+A S RR+     Y +A++K+ IP V++Q+F+ LFLDP S
Sbjct: 237  EKTQFACILSYITHLINFRKVAESVRRRKDKPDYAEAMSKFMIPSVVFQRFLTLFLDPVS 296

Query: 981  NVLPTDKKELVIGYILVLTLFADRFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRM 1160
            N++ ++K  L+I Y+LVLTL AD F T  +DI KDL +    ++ Y+LQLGCK       
Sbjct: 297  NLISSEKSVLLICYVLVLTLHADDFLTDSTDIEKDLAIARDSLKPYFLQLGCKTDNPKPF 356

Query: 1161 GKRLWTLPVPLKFTELKMRRKQKR 1232
             K   TLPVPL F  LK RR ++R
Sbjct: 357  QKSRMTLPVPLVFQGLKKRRFRRR 380


>ref|XP_010273794.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Nelumbo
            nucifera]
          Length = 406

 Score =  278 bits (710), Expect = 5e-86
 Identities = 175/410 (42%), Positives = 234/410 (57%), Gaps = 31/410 (7%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPP--EVRVFRHKQHRSSRLDLVVRPQGSN 266
            V+M      PD+I P+VGYF SG+NP  SE+    +VRV+ +K +R +RL LVV P  S 
Sbjct: 15   VKMEIFHQHPDKIPPLVGYFPSGFNPKRSEEEDSTKVRVYSNK-NRPNRLQLVVSPNSSK 73

Query: 267  VEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXXXEGNRR------------ 410
            VEFVG SY  EAA  Q C YALGVLDK+TQTLK+VPIA+        R            
Sbjct: 74   VEFVGTSYSSEAAAAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVRGSEVSDKEPR 133

Query: 411  ----------------ISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTD 542
                            I DLT+LYGTK+     KKM  L +Q  +P +++ +  ++    
Sbjct: 134  GELQEEDLTAEQKADKIRDLTNLYGTKKSISRAKKMESL-KQKEDPISQDAVDKKIEGFV 192

Query: 543  TNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENS 722
             N +ALE     T  N+PPHD +A TP+ AY L++II KGE DYL D+L L  SG   +S
Sbjct: 193  INKDALETAAVYTARNVPPHDPTATTPDKAYPLNKIIFKGEWDYLLDVLELLQSGATISS 252

Query: 723  TFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALY 902
                 + YP FV NRI+              A ILSYITHL+ F         K Q ++ 
Sbjct: 253  -----DAYPSFVCNRIYKLEEIQDEMEKKRLACILSYITHLIKF---------KDQRSVD 298

Query: 903  GDAINKY-KIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIA 1079
            G +  KY K P +I QKF+ LF +  +  L  DK++L+I Y+LVLTLF D+FST  SDIA
Sbjct: 299  GASSAKYHKFPPIILQKFLTLFANSETYRLADDKQDLLISYVLVLTLFIDKFSTDMSDIA 358

Query: 1080 KDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQK 1229
            KDL MT   +RL+Y  LGCKLS+  ++   + TLPVPL+F + + +R+++
Sbjct: 359  KDLRMTPVSLRLHYQNLGCKLSRVDKL--LMVTLPVPLQFPKPRTQRRRR 406


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Vitis
            vinifera]
          Length = 421

 Score =  276 bits (706), Expect = 3e-85
 Identities = 168/411 (40%), Positives = 235/411 (57%), Gaps = 33/411 (8%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPC-----DSEQPPEVRVFRHKQHRSSRLDLVVRPQ 257
            V+M  + + P++I P+VGYF SG++P      +S+ PP V+VFR+K  R++RL LVV P 
Sbjct: 29   VKMEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKA-RANRLQLVVSPN 87

Query: 258  GSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA------------------ 383
             S V FVG SY GEAA  Q C YALGVLDK+TQTLK+VPIA+                  
Sbjct: 88   DSKVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVD 147

Query: 384  ---------XXXXEGNRRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLK 536
                         E   R+ DLT+LYGTK+     KK++ L  Q ++P +++ L  ++ +
Sbjct: 148  EPSSLLKGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQAL-NQKDDPRSQKDLDRKLKE 206

Query: 537  TDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGE 716
               N EALE T A +  NIPP+D +A TP+ AY LD+II KGE DYL DIL L  +G+  
Sbjct: 207  VVINKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEV 266

Query: 717  NSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTA 896
                 E + Y  FV NRI               A I SYI HL+ +         K + +
Sbjct: 267  -----ESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKY---------KDRNS 312

Query: 897  LYGDAINKYKIPRVIYQKFVKLF-LDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSD 1073
            +   +   +KIP ++ QKF  +F LD  S  L  +KK+L+I Y+LVLTL+AD F T PSD
Sbjct: 313  MDASSAKHHKIPGILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSD 372

Query: 1074 IAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQ 1226
            IA+DL M+   +R ++  LGCKL  ++++   + TLPVPL F  L+ +R++
Sbjct: 373  IARDLRMSAVKLRAHFEHLGCKLVSQNKV--TMATLPVPLTFPRLRQKRRR 421


>emb|CBI35920.3| unnamed protein product, partial [Vitis vinifera]
          Length = 391

 Score =  274 bits (701), Expect = 7e-85
 Identities = 167/409 (40%), Positives = 233/409 (56%), Gaps = 33/409 (8%)
 Frame = +3

Query: 99   MSALTDTPDRIAPVVGYFSSGYNPC-----DSEQPPEVRVFRHKQHRSSRLDLVVRPQGS 263
            M  + + P++I P+VGYF SG++P      +S+ PP V+VFR+K  R++RL LVV P  S
Sbjct: 1    MEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKA-RANRLQLVVSPNDS 59

Query: 264  NVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA-------------------- 383
             V FVG SY GEAA  Q C YALGVLDK+TQTLK+VPIA+                    
Sbjct: 60   KVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEP 119

Query: 384  -------XXXXEGNRRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTD 542
                       E   R+ DLT+LYGTK+     KK++ L  Q ++P +++ L  ++ +  
Sbjct: 120  SSLLKGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQAL-NQKDDPRSQKDLDRKLKEVV 178

Query: 543  TNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENS 722
             N EALE T A +  NIPP+D +A TP+ AY LD+II KGE DYL DIL L  +G+    
Sbjct: 179  INKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEV-- 236

Query: 723  TFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALY 902
               E + Y  FV NRI               A I SYI HL+ +         K + ++ 
Sbjct: 237  ---ESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKY---------KDRNSMD 284

Query: 903  GDAINKYKIPRVIYQKFVKLF-LDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIA 1079
              +   +KIP ++ QKF  +F LD  S  L  +KK+L+I Y+LVLTL+AD F T PSDIA
Sbjct: 285  ASSAKHHKIPGILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSDIA 344

Query: 1080 KDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQ 1226
            +DL M+   +R ++  LGCKL  ++++   + TLPVPL F  L+ +R++
Sbjct: 345  RDLRMSAVKLRAHFEHLGCKLVSQNKV--TMATLPVPLTFPRLRQKRRR 391


>gb|KMZ63406.1| DNA-directed RNA polymerase I subunit rpa49 [Zostera marina]
          Length = 519

 Score =  272 bits (695), Expect = 2e-82
 Identities = 165/404 (40%), Positives = 235/404 (58%), Gaps = 29/404 (7%)
 Frame = +3

Query: 108  LTDTPDRIAPVVGYFSSGYNPCDS--EQPPEVRVFRHKQHRSSRLDLVVRPQGSNVEFVG 281
            + + P R AP V YF SGY+P  +  +  P+V +FR+K+ RS+R++LVVRPQGS ++FVG
Sbjct: 122  IQNVPSRNAPFVTYFPSGYDPLKNGDKNLPDVSLFRNKK-RSNRVELVVRPQGSELDFVG 180

Query: 282  KSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA-----------------XXXXEGN-- 404
            KSY GEA   + C YALGV DK+T  LK++PI                       E N  
Sbjct: 181  KSYTGEAVCPKICSYALGVFDKETNELKILPIETDKILRLEPRVIEQQYIEQKLTEDNLD 240

Query: 405  -----RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDT 569
                 +R  +LT+LYG+K+ R ++KK + + +Q NNP A+   QD+M     N  A E+T
Sbjct: 241  ASASIKRYRELTNLYGSKKNRTLNKKYQSMEDQRNNPDAQACAQDQMKDIQINRTANENT 300

Query: 570  KATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSG--IGENSTFWEENY 743
             A    N+PPHDLSA +PE AYL+++II K E  YL +IL + +SG  +   S F+    
Sbjct: 301  -AQVILNVPPHDLSASSPEKAYLINKIIPKDEWKYLNNILEMVNSGKDLDTTSEFYRSGA 359

Query: 744  YPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKY 923
            +PCFVVNRI                 + +YITHL+ F  ++              A +  
Sbjct: 360  FPCFVVNRIGKIRDSKDNSRKEELGRLFAYITHLITFMNMSFQKNFSEIIQSSVSAESIL 419

Query: 924  KIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIAKDLGMTTT 1103
             IPR+++QKF+KLF+D  S  +  +KK+L+I YILV+TLF D FS+S +DIAKDL    +
Sbjct: 420  NIPRLVFQKFLKLFVDSESQKVSHEKKDLLISYILVVTLFVDNFSSSSTDIAKDLKKNYS 479

Query: 1104 DMRLYYLQLGCKLSKESRMGKRLWTLPVPLKF-TELKMRRKQKR 1232
             +  +YLQLGCK++ +        TLP+PLKF T L ++R QK+
Sbjct: 480  ALVPHYLQLGCKINSKGHT-----TLPIPLKFPTMLVVKRFQKK 518


>ref|XP_022736064.1| DNA-directed RNA polymerase I subunit RPA49 [Durio zibethinus]
          Length = 449

 Score =  268 bits (684), Expect = 1e-81
 Identities = 165/421 (39%), Positives = 227/421 (53%), Gaps = 41/421 (9%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCDSE--------------QPPEVRVFRHK-QHRS 227
            V++    D P +I P+V YF SGYNP ++                PP+++VFR+  Q ++
Sbjct: 45   VKIQLFQDQPSKIPPLVAYFPSGYNPSEANPQTRQEEEEGNSQSNPPKIKVFRNMAQRKT 104

Query: 228  SRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIA--------- 380
            +RL +VV P GSNV+FVG SY GEAA  Q C ++LGVLDK+T TLK+VPIA         
Sbjct: 105  NRLQVVVSPSGSNVDFVGSSYSGEAAAPQVCRFSLGVLDKETGTLKIVPIACNKIFRLEP 164

Query: 381  -----------------AXXXXEGNRRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAR 509
                             +    E   ++ +LT+LYGTK+ RK  K    L ++ + P  +
Sbjct: 165  RVRSSEAANDGASNSVKSELTSEKKDKMGELTALYGTKKDRKKRKDFIDLKKEAD-PELQ 223

Query: 510  EQLQDEMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDIL 689
            + L  ++ +   + EALE+T A    NIPP+D SA TP  AY LD+II KGE D+L DI 
Sbjct: 224  KSLDKKIEQVAFDKEALENTSALITHNIPPYDSSATTPLEAYPLDKIIFKGEWDFLGDIY 283

Query: 690  GLFDSGIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAA 869
             L   G    S     N YP FV NRIH              + I SYITHLV F  L +
Sbjct: 284  KLLQVGAEVAS-----NAYPHFVCNRIHKLDAIRDETVKGKLSCIFSYITHLVKFKDLFS 338

Query: 870  SSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFAD 1049
                 S           +  P +I  +F+ +F DP S +L +DK +L+I Y+LVLTL AD
Sbjct: 339  MGHVTSA--------KNHNFPSIIRHRFMSMFTDPGSKILSSDKIDLLISYVLVLTLHAD 390

Query: 1050 RFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQK 1229
             F T PSDIAKDL ++  D+R ++L LGCK   E  +     TLPVPLKF    ++++++
Sbjct: 391  GFQTDPSDIAKDLRVSKVDLRRHFLNLGCKFMHEKSI--LFATLPVPLKFPSQNLKQRRR 448

Query: 1230 R 1232
            R
Sbjct: 449  R 449


>ref|XP_007039490.2| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Theobroma
            cacao]
          Length = 457

 Score =  263 bits (672), Expect = 1e-79
 Identities = 163/429 (37%), Positives = 230/429 (53%), Gaps = 49/429 (11%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCDSE---------------------QPPEVRVFR 209
            V++    D P++I P+V YF SGYNPC ++                       P V+V+R
Sbjct: 45   VKIQLFQDQPNKIPPLVAYFPSGYNPCKTDPQTRQEEEEEEEEEEGPDNKSNQPRVKVYR 104

Query: 210  HK-QHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAX 386
            +  Q +++RL +VV P GSNV+FVG +Y GEAA  Q C Y+LGVLD++T+TLK++PIA+ 
Sbjct: 105  NMAQRKTNRLQVVVSPSGSNVDFVGSNYSGEAAAAQVCKYSLGVLDRETRTLKIIPIASN 164

Query: 387  XXXEGNRRI---------------------------SDLTSLYGTKRQRKMDKKMRLLVE 485
                   R+                            +LT+LYGTK+ RK  K +  L +
Sbjct: 165  KIFRLEPRVRSSETANKDVSSSVKSELTTEDKEDKMGELTALYGTKKDRKKRKDLNNLKK 224

Query: 486  QTNNPSAREQLQDEMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGE 665
            +  +P +++ L +++ +   N EAL +T A    NIPPHD SA TP  AY LD+IILKG+
Sbjct: 225  EV-DPESQKSLDEKIEQVAFNKEALGNTSALVARNIPPHDCSATTPVEAYPLDKIILKGD 283

Query: 666  RDYLFDILGLFDSGIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHL 845
             ++L DI GL + G    S     N YP FV NRI+              + + S+ITHL
Sbjct: 284  WEFLGDIYGLLEVGAEVAS-----NAYPTFVCNRINKLEGIQDETEKRKLSCVFSFITHL 338

Query: 846  VNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYI 1025
            V F    +  R  S           +KIP +I Q+F  +F DP       D+  L+I Y+
Sbjct: 339  VKFNDQFSMDRVASAKG--------HKIPSIIRQRFFTMFTDPGLRKPSRDQINLLISYV 390

Query: 1026 LVLTLFADRFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTE 1205
            LVLTL AD F T PSDIAKDL M++  +R ++  LGCKL +E+       TLPVPLKF  
Sbjct: 391  LVLTLHADGFRTDPSDIAKDLRMSSIGLRPHFENLGCKLVREN--NSIFTTLPVPLKFPS 448

Query: 1206 LKMRRKQKR 1232
              ++R++KR
Sbjct: 449  ENLKRQRKR 457


>ref|XP_021276274.1| DNA-directed RNA polymerase I subunit rpa49 isoform X1 [Herrania
            umbratica]
          Length = 424

 Score =  262 bits (669), Expect = 1e-79
 Identities = 165/427 (38%), Positives = 230/427 (53%), Gaps = 47/427 (11%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPC-------------DSEQP------PEVRVFRHK 215
            V++    D P++I P+V YF SGYNPC             + E+P      P V+V+R+ 
Sbjct: 14   VKIQLFQDQPNKIPPLVAYFPSGYNPCKTDPQTRQEEEEEEEERPNNKSDQPRVKVYRNM 73

Query: 216  -QHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXX 392
             Q +++RL +VV P GSNV+FVG +Y GEAA  Q C Y+LGVLD++T+TLK++P+A+   
Sbjct: 74   AQRKTNRLQVVVSPSGSNVDFVGSNYSGEAAAAQVCRYSLGVLDRETRTLKIIPVASNKI 133

Query: 393  XEGNRRI---------------------------SDLTSLYGTKRQRKMDKKMRLLVEQT 491
                 R+                            +LT+LYGTK+ RK  K +  L ++ 
Sbjct: 134  FRLEPRVRSSETANKDVSNSVKSELTTEDKEDKMGELTALYGTKKDRKKRKDLNNLRKEV 193

Query: 492  NNPSAREQLQDEMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERD 671
             +P +++ L  ++ +   N EAL +T A    NIPPHD SA TP  AY LD+IILKG+ +
Sbjct: 194  -DPESQKSLDKKIEQVAFNKEALGNTSALIARNIPPHDSSATTPIEAYPLDKIILKGDWE 252

Query: 672  YLFDILGLFDSGIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVN 851
            +L DI GL + G    S     N YP FV NRI+              + + S+ITHLV 
Sbjct: 253  FLGDIYGLLEVGAEVAS-----NAYPTFVCNRINKLEGIQDETEKRKLSCVFSFITHLVK 307

Query: 852  FWKLAASSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILV 1031
            F    +  R  S           +KIP +I Q+F  +F DP       D+  L+I YILV
Sbjct: 308  FNDQVSMDRFASAKG--------HKIPSIIRQRFFTMFTDPGLRRPSPDQINLLISYILV 359

Query: 1032 LTLFADRFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELK 1211
            LTL AD F T PSDIAKDL M++  +R ++  LGCKL ++S       TLPVPLKF    
Sbjct: 360  LTLHADGFRTDPSDIAKDLRMSSIGLRPHFENLGCKLVRDS--NSIFTTLPVPLKFPSEN 417

Query: 1212 MRRKQKR 1232
            + RK++R
Sbjct: 418  LLRKRRR 424


>gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, putative [Theobroma
            cacao]
          Length = 457

 Score =  263 bits (671), Expect = 1e-79
 Identities = 163/429 (37%), Positives = 230/429 (53%), Gaps = 49/429 (11%)
 Frame = +3

Query: 93   VEMSALTDTPDRIAPVVGYFSSGYNPCDSE---------------------QPPEVRVFR 209
            V++    D P++I P+V YF SGYNPC ++                       P V+V+R
Sbjct: 45   VKIQLFQDQPNKIPPLVAYFPSGYNPCKTDPQTRQGEEEEEEEEEGPDNKSNQPRVKVYR 104

Query: 210  HK-QHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAX 386
            +  Q +++RL +VV P GSNV+FVG +Y GEAA  Q C Y+LGVLD++T+TLK++PIA+ 
Sbjct: 105  NMAQRKTNRLQVVVSPSGSNVDFVGSNYSGEAAAAQVCRYSLGVLDRETRTLKIIPIASN 164

Query: 387  XXXEGNRRI---------------------------SDLTSLYGTKRQRKMDKKMRLLVE 485
                   R+                            +LT+LYGTK+ RK  K +  L +
Sbjct: 165  KIFRLEPRVRSSETANKDVSSSVKSELTTEDKEDKMGELTALYGTKKDRKKRKDLNNLKK 224

Query: 486  QTNNPSAREQLQDEMLKTDTNNEALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGE 665
            +  +P +++ L +++ +   N EAL +T A    NIPPHD SA TP  AY LD+IILKG+
Sbjct: 225  EV-DPESQKSLDEKIEQVAFNKEALGNTSALVARNIPPHDSSATTPVEAYPLDKIILKGD 283

Query: 666  RDYLFDILGLFDSGIGENSTFWEENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHL 845
             ++L DI GL + G    S     N YP FV NRI+              + + S+ITHL
Sbjct: 284  WEFLGDIYGLLEVGAEVAS-----NAYPTFVCNRINKLEGIQDETEKRKLSCVFSFITHL 338

Query: 846  VNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYI 1025
            V F    +  R  S           +KIP +I Q+F  +F DP       D+  L+I Y+
Sbjct: 339  VKFNDQFSMDRVASAKG--------HKIPSIIRQRFFTMFTDPGLRKPSRDQINLLISYV 390

Query: 1026 LVLTLFADRFSTSPSDIAKDLGMTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTE 1205
            LVLTL AD F T PSDIAKDL M++  +R ++  LGCKL +E+       TLPVPLKF  
Sbjct: 391  LVLTLHADGFRTDPSDIAKDLRMSSIGLRPHFENLGCKLVREN--NSIFTTLPVPLKFPS 448

Query: 1206 LKMRRKQKR 1232
              ++R++KR
Sbjct: 449  ETLKRQRKR 457


>ref|XP_006426597.1| DNA-directed RNA polymerase I subunit RPA49 [Citrus clementina]
 gb|ESR39837.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
 dbj|GAY38494.1| hypothetical protein CUMW_037180 [Citrus unshiu]
          Length = 447

 Score =  262 bits (670), Expect = 2e-79
 Identities = 167/405 (41%), Positives = 232/405 (57%), Gaps = 32/405 (7%)
 Frame = +3

Query: 108  LTDTPDRIAPVVGYFSSGYNPC----DSEQPPEVRVFRH---KQHRSSRLDLVVRPQGSN 266
            + + P++  P+VGYF S Y P     D E  P+VRV+R+   K++R+ R++LVV P+ S+
Sbjct: 60   IPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSS 119

Query: 267  VEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXXXEGNRRI--SD------- 419
            V++VG SY GEA   Q CHYA+GVLD++TQTLK+VPIAA        R+  SD       
Sbjct: 120  VDYVGTSYSGEAMAPQFCHYAVGVLDRNTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179

Query: 420  ---------------LTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNE 554
                           L + YGTK+  +  KKM  L ++ N+P +++ L  +M     N E
Sbjct: 180  KGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKE 238

Query: 555  ALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWE 734
            ALE T + T  N+PP+D +A TP+ AY LD+IILKGE D++ DI     +G    S    
Sbjct: 239  ALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVIS---- 294

Query: 735  ENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAI 914
             + YP FV NRIH              A I SYITHLV F         K Q ++ G A 
Sbjct: 295  -DAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF---------KDQHSMDGGAS 344

Query: 915  NK-YKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIAKDLG 1091
             K ++IP++++QKF+  F D  S  L  DK  L+I Y+LVLTL AD F T+P+DIAKDL 
Sbjct: 345  AKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLR 404

Query: 1092 MTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQ 1226
            M+   +R ++ +LGCKL +E  M     TLPVPL+F +   RR++
Sbjct: 405  MSEFKLRDHFEKLGCKLLREKNM--LYATLPVPLQFPKAIQRRRR 447


>ref|XP_006465974.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Citrus
            sinensis]
 gb|KDO65131.1| hypothetical protein CISIN_1g013236mg [Citrus sinensis]
          Length = 447

 Score =  262 bits (669), Expect = 2e-79
 Identities = 167/405 (41%), Positives = 231/405 (57%), Gaps = 32/405 (7%)
 Frame = +3

Query: 108  LTDTPDRIAPVVGYFSSGYNPC----DSEQPPEVRVFRH---KQHRSSRLDLVVRPQGSN 266
            + + P++  P+VGYF S Y P     D E  P+VRV+R+   K++R+ R++LVV P+ S+
Sbjct: 60   IPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSS 119

Query: 267  VEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAAXXXXEGNRRI--SD------- 419
            V++VG SY GEA   Q CHYA+GVLD+ TQTLK+VPIAA        R+  SD       
Sbjct: 120  VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179

Query: 420  ---------------LTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNE 554
                           L + YGTK+  +  KKM  L ++ N+P +++ L  +M     N E
Sbjct: 180  KGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKE 238

Query: 555  ALEDTKATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWE 734
            ALE T + T  N+PP+D +A TP+ AY LD+IILKGE D++ DI     +G    S    
Sbjct: 239  ALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVIS---- 294

Query: 735  ENYYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAI 914
             + YP FV NRIH              A I SYITHLV F         K Q ++ G A 
Sbjct: 295  -DAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF---------KDQHSMDGGAS 344

Query: 915  NK-YKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSPSDIAKDLG 1091
             K ++IP++++QKF+  F D  S  L  DK  L+I Y+LVLTL AD F T+P+DIAKDL 
Sbjct: 345  AKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLR 404

Query: 1092 MTTTDMRLYYLQLGCKLSKESRMGKRLWTLPVPLKFTELKMRRKQ 1226
            M+   +R ++ +LGCKL +E  M     TLPVPL+F +   RR++
Sbjct: 405  MSEFKLRDHFEKLGCKLLREKNM--LYATLPVPLQFPKAIQRRRR 447