BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00002974
         (3605 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020255590.1| DNA-directed RNA polymerases IV and V subuni...  1968   0.0  
ref|XP_008784482.1| PREDICTED: DNA-directed RNA polymerases IV a...  1790   0.0  
ref|XP_010937061.1| PREDICTED: DNA-directed RNA polymerases IV a...  1782   0.0  
ref|XP_020112440.1| DNA-directed RNA polymerases IV and V subuni...  1779   0.0  
gb|OAY64687.1| DNA-directed RNA polymerases IV and V subunit 2, ...  1768   0.0  
ref|XP_009413518.1| PREDICTED: DNA-directed RNA polymerases IV a...  1760   0.0  
ref|XP_012703111.1| DNA-directed RNA polymerases IV and V subuni...  1672   0.0  
ref|XP_020692708.1| DNA-directed RNA polymerases IV and V subuni...  1667   0.0  
gb|PAN40366.1| hypothetical protein PAHAL_G02501 [Panicum hallii...  1659   0.0  
ref|XP_020593256.1| DNA-directed RNA polymerases IV and V subuni...  1658   0.0  
ref|XP_020593257.1| DNA-directed RNA polymerases IV and V subuni...  1658   0.0  
ref|XP_002468227.1| DNA-directed RNA polymerases IV and V subuni...  1652   0.0  
gb|AQK46524.1| DNA-directed RNA polymerases IV and V subunit 2 [...  1650   0.0  
ref|XP_015636222.1| PREDICTED: DNA-directed RNA polymerases IV a...  1649   0.0  
ref|NP_001338873.1| required to maintain repression 7 [Zea mays]...  1649   0.0  
ref|XP_002447199.1| DNA-directed RNA polymerases IV and V subuni...  1649   0.0  
dbj|BAF15955.1| Os04g0641000, partial [Oryza sativa Japonica Group]  1647   0.0  
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]        1647   0.0  
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...  1645   0.0  
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a...  1644   0.0  

>ref|XP_020255590.1| DNA-directed RNA polymerases IV and V subunit 2-like [Asparagus
            officinalis]
          Length = 1192

 Score = 1968 bits (5098), Expect = 0.0
 Identities = 960/1155 (83%), Positives = 1049/1155 (90%), Gaps = 13/1155 (1%)
 Frame = -2

Query: 3586 QKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYD 3407
            Q  +L  ETLE+FCK A++AFF+EFGLI HQINSFNQF+TSGLQE+FDSLGEV VEPGYD
Sbjct: 38   QYLDLKEETLERFCKDAARAFFSEFGLINHQINSFNQFITSGLQEIFDSLGEVVVEPGYD 97

Query: 3406 PSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEV 3227
            PSKGGGGDW+HA+I YG+VRL KP+FWTERS QE E LKLLPKHARLQNMTYSSKLKVEV
Sbjct: 98   PSKGGGGDWQHATITYGKVRLGKPTFWTERSGQETEELKLLPKHARLQNMTYSSKLKVEV 157

Query: 3226 KVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYD 3047
            +VQV+I EKSDKAKTGKD +I KRVL+++KKEI IGS+PVMVKSK CWLDTL+KSDCLYD
Sbjct: 158  RVQVYILEKSDKAKTGKDSHICKRVLSDDKKEITIGSMPVMVKSKLCWLDTLDKSDCLYD 217

Query: 3046 SGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLN 2867
            SGGYFIVKGAEK FIAQEQRCLTRLW+TD+P WTAS  SE+KK+RVYVKL+DASK+DGLN
Sbjct: 218  SGGYFIVKGAEKVFIAQEQRCLTRLWITDKPVWTASHISEMKKKRVYVKLVDASKVDGLN 277

Query: 2866 SGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYE 2687
            SGKLIS+YFLYATMPVW+MFFALGA SDKEVF+MIDLDGCD  +TNIILATIRDADEQ  
Sbjct: 278  SGKLISIYFLYATMPVWVMFFALGAASDKEVFEMIDLDGCDNNITNIILATIRDADEQCN 337

Query: 2686 GFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLLGY 2507
             FR AG+SRDYV++LIK++KFPP+ESFDEY+ KYLFPTISGHREKA FLGYIVKCLLLG 
Sbjct: 338  DFRKAGRSRDYVDSLIKNSKFPPTESFDEYVGKYLFPTISGHREKALFLGYIVKCLLLGC 397

Query: 2506 SGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIERYW 2327
             GKRKCD ++DFRNKRLDLVGELL  EL A+IRHAEKRMVKAMQRDL GDRDLQLIERYW
Sbjct: 398  FGKRKCDKRDDFRNKRLDLVGELLGRELWANIRHAEKRMVKAMQRDLSGDRDLQLIERYW 457

Query: 2326 DASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAGKA 2147
            DASI+TNGLNRAFSTG WCHP+ KTERCSGVVANLQRTNALQMM+ LR+TR QVAYAGKA
Sbjct: 458  DASIVTNGLNRAFSTGQWCHPYIKTERCSGVVANLQRTNALQMMSSLRKTRQQVAYAGKA 517

Query: 2146 GDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLDQI 1967
            GDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSS  NEP+LDKLVSCGMEKLDQI
Sbjct: 518  GDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSSINEPVLDKLVSCGMEKLDQI 577

Query: 1966 SVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVFTD 1787
            SV+SLSK  K+FLNGDWIGVCSDS+ FV++FR MRR+Q+I+SQVEIKLD++Q+EVR+F+D
Sbjct: 578  SVSSLSKTYKIFLNGDWIGVCSDSRLFVLNFRQMRRAQEINSQVEIKLDQHQKEVRIFSD 637

Query: 1786 AGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQE 1607
            AGRLLRP                +SS+QSLVNEG+IE IGVEEEEDC  AWGIRYLLQ+ 
Sbjct: 638  AGRLLRPLLIVENLKKVKSLKGGISSYQSLVNEGIIELIGVEEEEDCRAAWGIRYLLQEG 697

Query: 1606 NGQPA--YTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
            + Q A  YTHC+ DPSF++GLSCGIIPFANHN ARRVLFQAQKHSHQA+GFSTTNP IRV
Sbjct: 698  SKQAAIPYTHCELDPSFLLGLSCGIIPFANHNLARRVLFQAQKHSHQAVGFSTTNPDIRV 757

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHQGYNQE 1253
            DTLMHQMYYPQRPLF+TV+ADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVH GYNQE
Sbjct: 758  DTLMHQMYYPQRPLFRTVVADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHLGYNQE 817

Query: 1252 DSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLEDD 1073
            DSLVMNRASLERGMFRTEHFRSYKAEV+NKE++KRIK+KDKVEF K+QSKKGRVDSLEDD
Sbjct: 818  DSLVMNRASLERGMFRTEHFRSYKAEVENKEITKRIKLKDKVEFGKMQSKKGRVDSLEDD 877

Query: 1072 GFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXXX 926
            GFP+IGACLQ+GDIVIGKVAESG+DHSTKLKHTEKGMVQKVVLS                
Sbjct: 878  GFPWIGACLQTGDIVIGKVAESGEDHSTKLKHTEKGMVQKVVLSANDEGKNFAVVTLRQV 937

Query: 925  XXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAAL 746
               CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEA+L
Sbjct: 938  RSPCLGDKFSSMHGQKGVVGFLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLLEASL 997

Query: 745  GKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPTF 566
            GKGIA GGK+TYATPFTTPSVDVI EQLH L FQRWG+ERVLNGRTGE+M++MIF GPTF
Sbjct: 998  GKGIALGGKITYATPFTTPSVDVIAEQLHRLNFQRWGAERVLNGRTGELMQTMIFTGPTF 1057

Query: 565  YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL 386
            YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL
Sbjct: 1058 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL 1117

Query: 385  FTLSDFSQMHICRTCSRPANVIQRALSNGNVRGPYCGFCKSAENIVRVNVPYGAKLLFQE 206
            FTLSDFSQMH+CRTCSR ANVIQR +SNG +RGPYCGFCKS EN+VR+NVPYGAKLLFQE
Sbjct: 1118 FTLSDFSQMHVCRTCSRFANVIQRVVSNGKIRGPYCGFCKSGENVVRINVPYGAKLLFQE 1177

Query: 205  LFSMGICLKFETEVC 161
            LFSMGICLKFETEVC
Sbjct: 1178 LFSMGICLKFETEVC 1192


>ref|XP_008784482.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Phoenix dactylifera]
          Length = 1189

 Score = 1790 bits (4635), Expect = 0.0
 Identities = 865/1164 (74%), Positives = 999/1164 (85%), Gaps = 25/1164 (2%)
 Frame = -2

Query: 3577 NLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYDPSK 3398
            N+NV +LEKFCK A+++FF E+GLI HQINS+N+F+  G+Q+LFDSLGEV+VEPGYDPSK
Sbjct: 26   NMNVGSLEKFCKEAARSFFAEWGLISHQINSYNEFIGHGIQDLFDSLGEVNVEPGYDPSK 85

Query: 3397 GGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEVKVQ 3218
              G +WRHA++ +G+VRL+KPSFW+ R D  +E LKLLP+HARLQNMTYSS+LKVEV+VQ
Sbjct: 86   KRGAEWRHATVSFGKVRLEKPSFWSGRDDLPEENLKLLPRHARLQNMTYSSQLKVEVRVQ 145

Query: 3217 VFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYDSGG 3038
            V+ QEKSDKAKTGKD YI K V++++KKEI IG IPVM++SK CWL TL+KSDCL+DSGG
Sbjct: 146  VYTQEKSDKAKTGKDAYIHKNVVSDKKKEIAIGRIPVMIRSKLCWLHTLDKSDCLFDSGG 205

Query: 3037 YFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLNSGK 2858
            YF++KG EK FIAQEQR L R+W+TD+P+WT S  SE+K++R+Y+KL++A K +G + GK
Sbjct: 206  YFLIKGMEKTFIAQEQRHLARVWVTDKPSWTVSYLSEMKRKRIYIKLVEAPKAEGFSGGK 265

Query: 2857 LISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYE--- 2687
            +++ +FLYAT+PVWIMFFALGA+SDKEVF+MIDL      L NIILAT+++ADE Y+   
Sbjct: 266  VVNFFFLYATIPVWIMFFALGASSDKEVFEMIDLGESSADLINIILATVKNADEHYKKFR 325

Query: 2686 --------GFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYI 2531
                     FR   K++DYVN+ +K +KFPPSESFDEY+ K+LFP ISGHR+KA FLGY+
Sbjct: 326  EDADEHDKNFRRVDKAQDYVNSQVKVSKFPPSESFDEYVDKFLFPNISGHRQKALFLGYM 385

Query: 2530 VKCLLLGYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRD 2351
            VKCLLL   GKRKCDNK+DFRNKRLDL GELLA ELRAHIRHAE+RMVKAMQRDL+GDRD
Sbjct: 386  VKCLLLACFGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHAERRMVKAMQRDLYGDRD 445

Query: 2350 LQLIERYWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRL 2171
            LQLIERY DASIITNGLNRAFSTG WCHP+++TERCSG+VA L+RTN LQMM+DLR+TR 
Sbjct: 446  LQLIERYLDASIITNGLNRAFSTGAWCHPYKRTERCSGIVATLRRTNPLQMMSDLRKTRQ 505

Query: 2170 QVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSC 1991
            QVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNL+VTALVS +  EPILDKL+SC
Sbjct: 506  QVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTALVSLKVTEPILDKLISC 565

Query: 1990 GMEKLDQISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQ 1811
            GMEKLD+IS++S+S MDKVF+NGDW+GVC+DS SFV   R MRR++ I  QVEIK D++Q
Sbjct: 566  GMEKLDEISLSSISNMDKVFMNGDWVGVCADSTSFVAKLRCMRRARLIHPQVEIKRDKHQ 625

Query: 1810 REVRVFTDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWG 1631
            REVR+F+DAGR+LRP                V SFQ L++EG+IE IGVEEEEDC TAWG
Sbjct: 626  REVRIFSDAGRILRPLLIVENLKKTSKLKGGVCSFQYLMDEGIIELIGVEEEEDCHTAWG 685

Query: 1630 IRYLLQQENGQPA--YTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFS 1457
            IR+L   + G PA  Y+HC+ D SF++GLSCGIIPFANHN+ARRVL+QA+KHS QAIGFS
Sbjct: 686  IRHLFMGDEGGPAPKYSHCELDVSFLLGLSCGIIPFANHNFARRVLYQAEKHSQQAIGFS 745

Query: 1456 TTNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVN 1277
            TTNP IRVDTL HQ+YYPQ+PLF+TVIADCLGR DYSL  KD M RPE FNGQNAIVAVN
Sbjct: 746  TTNPNIRVDTLSHQLYYPQKPLFRTVIADCLGRADYSLRRKDSMPRPEYFNGQNAIVAVN 805

Query: 1276 VHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKG 1097
            VHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEV+NKE++KR K++DKV+F K+QSKKG
Sbjct: 806  VHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVENKELTKRFKLRDKVDFGKMQSKKG 865

Query: 1096 RVDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-------- 941
            RVDSL+DDGFP+IGA LQSGDIVIGKVAESG+DH  KLKHTEKGMVQKVVLS        
Sbjct: 866  RVDSLDDDGFPYIGASLQSGDIVIGKVAESGEDHGIKLKHTEKGMVQKVVLSANDEGKNF 925

Query: 940  ---XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTP 770
                       CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTP
Sbjct: 926  AVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTP 985

Query: 769  GQLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRS 590
            GQLLEAALGKGIACGG V YATPFTT SVDVITEQLH   F RWGSE+VLNGRTGE+MRS
Sbjct: 986  GQLLEAALGKGIACGGSVRYATPFTTASVDVITEQLHRAGFSRWGSEKVLNGRTGEVMRS 1045

Query: 589  MIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA 410
            MIF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA
Sbjct: 1046 MIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA 1105

Query: 409  AANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNGN-VRGPYCGFCKSAENIVRVNVP 233
            A+NLHERLFTLSDFSQMHIC+TC R ANVI R +  GN +RGPYC +C+S+ENIV++NVP
Sbjct: 1106 ASNLHERLFTLSDFSQMHICQTCKRAANVILRPVVGGNKIRGPYCNYCQSSENIVKINVP 1165

Query: 232  YGAKLLFQELFSMGICLKFETEVC 161
            YGAKLL+QELFSMGICLKF+TEVC
Sbjct: 1166 YGAKLLYQELFSMGICLKFDTEVC 1189


>ref|XP_010937061.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Elaeis
            guineensis]
          Length = 1189

 Score = 1782 bits (4615), Expect = 0.0
 Identities = 863/1164 (74%), Positives = 995/1164 (85%), Gaps = 25/1164 (2%)
 Frame = -2

Query: 3577 NLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYDPSK 3398
            ++NV +LEKFCK A+++FF E+GLI HQINS+N+F+  G+Q+LFDSLGEV+VEPGYDPSK
Sbjct: 26   DMNVGSLEKFCKEAARSFFAEWGLISHQINSYNEFIEHGIQDLFDSLGEVNVEPGYDPSK 85

Query: 3397 GGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEVKVQ 3218
              G +WRHA++ +G+VRL+KPSFW+ R D  +E LKLLP+HARLQNMTYSS++KVEV+V 
Sbjct: 86   KRGAEWRHATVSFGKVRLEKPSFWSGRDDLPEENLKLLPRHARLQNMTYSSQMKVEVRVL 145

Query: 3217 VFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYDSGG 3038
            V+ QEKSDKAKTGKD YI K V++++KKEI IG IPVM++SK CWL TL+KSDCL+DSGG
Sbjct: 146  VYTQEKSDKAKTGKDAYIVKNVVSDKKKEIAIGRIPVMIRSKLCWLHTLDKSDCLFDSGG 205

Query: 3037 YFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLNSGK 2858
            YF++KG EK FIAQEQR L R+W+TD+P+W  S  SEIK++R+Y+KL++A K +G + GK
Sbjct: 206  YFLIKGMEKTFIAQEQRHLARVWVTDKPSWAVSYLSEIKRKRIYIKLVEAPKAEGFSGGK 265

Query: 2857 LISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYE--- 2687
            +++ +FLYAT+PVWIMFFALGA+SDKEVF+MIDL      L NIILAT+++ADE Y+   
Sbjct: 266  VVNFFFLYATIPVWIMFFALGASSDKEVFEMIDLGESSADLINIILATVKNADEHYKKFR 325

Query: 2686 --------GFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYI 2531
                     FR   K++DYVN  +K +KFPPSESFDEY+ K+LFP I GHR+KA FLGY+
Sbjct: 326  EDADEHDKNFRRIDKAQDYVNGQVKVSKFPPSESFDEYVDKFLFPNIYGHRQKALFLGYM 385

Query: 2530 VKCLLLGYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRD 2351
            VKCLLL   GKRKCDNK+DFRNKRLDL GELLA ELRAHIRHAE+RMVKAMQRDL+GDRD
Sbjct: 386  VKCLLLACFGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHAERRMVKAMQRDLYGDRD 445

Query: 2350 LQLIERYWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRL 2171
            LQLIERY DASIITNGLNRAFSTG WCHP+++TERCSG+VA L+RTN LQMM+DLR+TR 
Sbjct: 446  LQLIERYLDASIITNGLNRAFSTGAWCHPYKRTERCSGIVATLRRTNPLQMMSDLRKTRQ 505

Query: 2170 QVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSC 1991
            QVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNL+VTALVS +  EPILDKL+SC
Sbjct: 506  QVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTALVSLKVTEPILDKLISC 565

Query: 1990 GMEKLDQISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQ 1811
            GMEKLD+IS+TS+S MDKVFLNGDW+GVC+DS SFV   R MRR+  I SQVEIK D++Q
Sbjct: 566  GMEKLDEISLTSVSSMDKVFLNGDWVGVCADSSSFVARLRCMRRATLIHSQVEIKRDKHQ 625

Query: 1810 REVRVFTDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWG 1631
            REVR+F+DAGR+LRP                V SFQ L+++G+IE IGVEEEEDC TAWG
Sbjct: 626  REVRIFSDAGRILRPLLIVENLEKISKLKGGVCSFQHLMDQGIIELIGVEEEEDCPTAWG 685

Query: 1630 IRYLLQQENGQPA--YTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFS 1457
            IR+L   + GQPA  YTHC+ D SF++GLSCGIIPFANHN+ARRVL+QA+KHS QAIGFS
Sbjct: 686  IRHLFMGDEGQPAPKYTHCELDVSFLLGLSCGIIPFANHNFARRVLYQAEKHSQQAIGFS 745

Query: 1456 TTNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVN 1277
            TTNP IRVDTL HQ+YYPQ+PLF+TVIADCLGR  +SLG KD M RPE FNGQNAIVAVN
Sbjct: 746  TTNPNIRVDTLSHQLYYPQKPLFRTVIADCLGRAVHSLGRKDSMPRPEYFNGQNAIVAVN 805

Query: 1276 VHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKG 1097
            VHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEV+NKE++KR K++DKV+F K+QSKKG
Sbjct: 806  VHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVENKELTKRFKLRDKVDFGKMQSKKG 865

Query: 1096 RVDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-------- 941
            +VDSL+DDGFP+IGA LQSGDIVIGKVAESG+DH  KLKHTEKGMVQKVVLS        
Sbjct: 866  KVDSLDDDGFPYIGASLQSGDIVIGKVAESGEDHGIKLKHTEKGMVQKVVLSANDEGKNF 925

Query: 940  ---XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTP 770
                       CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTP
Sbjct: 926  AVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTP 985

Query: 769  GQLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRS 590
            GQLLEAALGKGIACGG V YATPFTT SVDVITEQLH   F RWGSE+VLNGRTGE+MRS
Sbjct: 986  GQLLEAALGKGIACGGSVRYATPFTTASVDVITEQLHRAGFSRWGSEKVLNGRTGEVMRS 1045

Query: 589  MIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA 410
            MIF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA
Sbjct: 1046 MIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGA 1105

Query: 409  AANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNGN-VRGPYCGFCKSAENIVRVNVP 233
            A+NLHERLF LSDFSQMHIC+TC R ANVI R +  GN +RGPYC FC+S+ENIV++NVP
Sbjct: 1106 ASNLHERLFMLSDFSQMHICQTCRRAANVILRPVVGGNKIRGPYCNFCQSSENIVKINVP 1165

Query: 232  YGAKLLFQELFSMGICLKFETEVC 161
            YGAKLL+QELFSMGICLKF+TEVC
Sbjct: 1166 YGAKLLYQELFSMGICLKFDTEVC 1189


>ref|XP_020112440.1| DNA-directed RNA polymerases IV and V subunit 2-like [Ananas comosus]
 ref|XP_020112441.1| DNA-directed RNA polymerases IV and V subunit 2-like [Ananas comosus]
          Length = 1201

 Score = 1779 bits (4608), Expect = 0.0
 Identities = 856/1163 (73%), Positives = 993/1163 (85%), Gaps = 19/1163 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S +  +++V +LEKFCK A++AFFN++GLI HQINS+N+F+  GLQ+LFDSLGE++VEPG
Sbjct: 39   SMENLDMSVASLEKFCKEAARAFFNDWGLISHQINSYNEFIAHGLQDLFDSLGEITVEPG 98

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK GG  WRHA+I +G+V L+KP FW+ ++D E+ECLKL P+HARLQNMTYSS++KV
Sbjct: 99   YDPSKKGGSAWRHATISFGKVSLEKPVFWSGKNDYEEECLKLTPRHARLQNMTYSSQMKV 158

Query: 3232 EVKVQVFIQEKSDKAKTGKDPY-----ISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLE 3068
            EV+VQV+  EKSDKAK+GKD       + KRV  +EKKEI IG +PVMV+S  CWL+TL 
Sbjct: 159  EVRVQVYSHEKSDKAKSGKDQSGKDQSVHKRVWADEKKEITIGRLPVMVRSNLCWLNTLG 218

Query: 3067 KSDCLYDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDA 2888
            KSDCL+DSGGYF++KG EK FIAQEQRCLTRLW+TD+P WT S  SEIK++R+Y+KLL++
Sbjct: 219  KSDCLFDSGGYFLIKGMEKTFIAQEQRCLTRLWVTDRPVWTVSYISEIKRKRIYIKLLES 278

Query: 2887 SKIDGLNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIR 2708
             K +G N  ++IS+YFLYAT P+W+MFFALGA+SDKE+F+MIDL+ C   + NI+LATI+
Sbjct: 279  PKAEGSNGRRVISLYFLYATAPIWLMFFALGASSDKEIFEMIDLEDCSASIVNILLATIK 338

Query: 2707 DADEQYEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIV 2528
            + DEQ+EGFR   K+R+Y+N  IK+AKFPPSESFDEY+SKYLFP +SGHR+KA  LGY+V
Sbjct: 339  ETDEQFEGFRKEDKAREYINEQIKNAKFPPSESFDEYVSKYLFPGVSGHRQKALSLGYMV 398

Query: 2527 KCLLLGYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDL 2348
            KCLLL +SGKRKCDNK+DFRNKRLDL GELLA ELRAHIRHAEKRMVK MQRDL+GDRDL
Sbjct: 399  KCLLLAFSGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHAEKRMVKTMQRDLYGDRDL 458

Query: 2347 QLIERYWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQ 2168
            QLIERYWDASIITNG+NRAFSTG WCHP+++TER SG+VA L+RTN LQMM+DLR+TR Q
Sbjct: 459  QLIERYWDASIITNGINRAFSTGAWCHPYKRTERISGIVATLRRTNPLQMMSDLRKTRQQ 518

Query: 2167 VAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCG 1988
            VAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNL+VTA+VSSR  EPILDKLVSCG
Sbjct: 519  VAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRIMEPILDKLVSCG 578

Query: 1987 MEKLDQISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQR 1808
            MEKLD+  ++S +KMDKVFLNGDWIGVC+D  SFV SFR MRR++ I +QVEIK D++Q+
Sbjct: 579  MEKLDESPLSSTTKMDKVFLNGDWIGVCADPSSFVESFRCMRRNKVIHAQVEIKRDKHQK 638

Query: 1807 EVRVFTDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGI 1628
            EVR+F+DAGR++RP                  SFQ L+++ +IE IGVEEEED  TAWG+
Sbjct: 639  EVRIFSDAGRIMRPLLVVDNLKKIKNLKGGSYSFQYLMDQEIIELIGVEEEEDLQTAWGV 698

Query: 1627 RYLLQQENGQ--PAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFST 1454
            R+L   + G+  P Y+H + + SF+MGLSCGIIPFANHN+ARRVL+Q++KHS QAIGFST
Sbjct: 699  RHLFVGDKGEPIPKYSHSELELSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGFST 758

Query: 1453 TNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNV 1274
            TNP IRVDTL HQ+YYPQRPLFKTVIADCLGR DYS G KD ++RPE FNGQNAIVAVNV
Sbjct: 759  TNPNIRVDTLSHQLYYPQRPLFKTVIADCLGRTDYSPGRKDDVARPEYFNGQNAIVAVNV 818

Query: 1273 HQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGR 1094
            HQGYNQEDSLVMNR SLERGMFRTEHFRSYKAEV+NK+ + R+K KDKV+F K QSKKGR
Sbjct: 819  HQGYNQEDSLVMNRTSLERGMFRTEHFRSYKAEVENKDFTNRLKPKDKVDFGKTQSKKGR 878

Query: 1093 VDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS--------- 941
            VDSL+DDG P+I A LQSGDIVIGKVAESG+DHS KLKHTEKGMVQKV+LS         
Sbjct: 879  VDSLDDDGLPYISASLQSGDIVIGKVAESGEDHSIKLKHTEKGMVQKVILSANDEGKNFA 938

Query: 940  --XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPG 767
                      CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPG
Sbjct: 939  VVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTRQGIVPDIVINPHAFPTRQTPG 998

Query: 766  QLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSM 587
            QLLEAALGKGIACGG   YATPFTTPSVDVITEQLH   + RWGSE+VLNGRTGE+MRSM
Sbjct: 999  QLLEAALGKGIACGGSARYATPFTTPSVDVITEQLHRAGYSRWGSEKVLNGRTGEMMRSM 1058

Query: 586  IFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAA 407
            IF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAA
Sbjct: 1059 IFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAA 1118

Query: 406  ANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPY 230
            ANLHERLF LSDFSQMHIC+TC R ANVI R +  G  +RGP+CGFC+SAENIV++NVPY
Sbjct: 1119 ANLHERLFMLSDFSQMHICQTCKRAANVILRPVPGGKKIRGPFCGFCRSAENIVKINVPY 1178

Query: 229  GAKLLFQELFSMGICLKFETEVC 161
            GAKLL+QELFS GICLKFETEVC
Sbjct: 1179 GAKLLYQELFSTGICLKFETEVC 1201


>gb|OAY64687.1| DNA-directed RNA polymerases IV and V subunit 2, partial [Ananas
            comosus]
          Length = 1228

 Score = 1768 bits (4579), Expect = 0.0
 Identities = 856/1182 (72%), Positives = 993/1182 (84%), Gaps = 38/1182 (3%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S +  +++V +LEKFCK A++AFFN++GLI HQINS+N+F+  GLQ+LFDSLGE++VEPG
Sbjct: 47   SMENLDMSVASLEKFCKEAARAFFNDWGLISHQINSYNEFIAHGLQDLFDSLGEITVEPG 106

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK GG  WRHA+I +G+V L+KP FW+ ++D E+ECLKL P+HARLQNMTYSS++KV
Sbjct: 107  YDPSKKGGSAWRHATISFGKVSLEKPVFWSGKNDYEEECLKLTPRHARLQNMTYSSQMKV 166

Query: 3232 EVKVQVFIQEKSDKAKTGKDPY-----ISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLE 3068
            EV+VQV+  EKSDKAK+GKD       + KRV  +EKKEI IG +PVMV+S  CWL+TL 
Sbjct: 167  EVRVQVYSHEKSDKAKSGKDQSGKDQSVHKRVWADEKKEITIGRLPVMVRSNLCWLNTLG 226

Query: 3067 KSDCLYDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDA 2888
            KSDCL+DSGGYF++KG EK FIAQEQRCLTRLW+TD+P WT S  SEIK++R+Y+KLL++
Sbjct: 227  KSDCLFDSGGYFLIKGMEKTFIAQEQRCLTRLWVTDRPVWTVSYISEIKRKRIYIKLLES 286

Query: 2887 SKIDGLNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIR 2708
             K +G N  ++IS+YFLYAT P+W+MFFALGA+SDKE+F+MIDL+ C   + NI+LATI+
Sbjct: 287  PKAEGSNGRRVISLYFLYATAPIWLMFFALGASSDKEIFEMIDLEDCSASIVNILLATIK 346

Query: 2707 DADEQYEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIV 2528
            + DEQ+EGFR   K+R+Y+N  IK+AKFPPSESFDEY+SKYLFP +SGHR+KA  LGY+V
Sbjct: 347  ETDEQFEGFRKEDKAREYINEQIKNAKFPPSESFDEYVSKYLFPGVSGHRQKALSLGYMV 406

Query: 2527 KCLLLGYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDL 2348
            KCLLL +SGKRKCDNK+DFRNKRLDL GELLA ELRAHIRHAEKRMVK MQRDL+GDRDL
Sbjct: 407  KCLLLAFSGKRKCDNKDDFRNKRLDLAGELLARELRAHIRHAEKRMVKTMQRDLYGDRDL 466

Query: 2347 QLIERYWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQ 2168
            QLIERYWDASIITNG+NRAFSTG WCHP+++TER SG+VA L+RTN LQMM+DLR+TR Q
Sbjct: 467  QLIERYWDASIITNGINRAFSTGAWCHPYKRTERISGIVATLRRTNPLQMMSDLRKTRQQ 526

Query: 2167 VAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCG 1988
            VAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNL+VTA+VSSR  EPILDKLVSCG
Sbjct: 527  VAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRIMEPILDKLVSCG 586

Query: 1987 MEKLDQISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQR 1808
            MEKLD+  ++S +KMDKVFLNGDWIGVC+D  SFV SFR MRR++ I +QVEIK D++Q+
Sbjct: 587  MEKLDESPLSSTTKMDKVFLNGDWIGVCADPSSFVESFRCMRRNKVIHAQVEIKRDKHQK 646

Query: 1807 EVRVFTDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGI 1628
            EVR+F+DAGR++RP                  SFQ L+++ +IE IGVEEEED  TAWG+
Sbjct: 647  EVRIFSDAGRIMRPLLVVDNLKKIKNLKGGSYSFQYLMDQEIIELIGVEEEEDLQTAWGV 706

Query: 1627 RYLLQQENGQ--PAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFST 1454
            R+L   + G+  P Y+H + + SF+MGLSCGIIPFANHN+ARRVL+Q++KHS QAIGFST
Sbjct: 707  RHLFVGDKGEPIPKYSHSELELSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGFST 766

Query: 1453 TNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNV 1274
            TNP IRVDTL HQ+YYPQRPLFKTVIADCLGR DYS G KD ++RPE FNGQNAIVAVNV
Sbjct: 767  TNPNIRVDTLSHQLYYPQRPLFKTVIADCLGRTDYSPGRKDDVARPEYFNGQNAIVAVNV 826

Query: 1273 HQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGR 1094
            HQGYNQEDSLVMNR SLERGMFRTEHFRSYKAEV+NK+ + R+K KDKV+F K QSKKGR
Sbjct: 827  HQGYNQEDSLVMNRTSLERGMFRTEHFRSYKAEVENKDFTNRLKPKDKVDFGKTQSKKGR 886

Query: 1093 VDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS--------- 941
            VDSL+DDG P+I A LQSGDIVIGKVAESG+DHS KLKHTEKGMVQKV+LS         
Sbjct: 887  VDSLDDDGLPYISASLQSGDIVIGKVAESGEDHSIKLKHTEKGMVQKVILSANDEGKNFA 946

Query: 940  --XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPG 767
                      CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPG
Sbjct: 947  VVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTRQGIVPDIVINPHAFPTRQTPG 1006

Query: 766  QLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLH-------------------SLKFQ 644
            QLLEAALGKGIACGG   YATPFTTPSVDVITEQLH                      + 
Sbjct: 1007 QLLEAALGKGIACGGSARYATPFTTPSVDVITEQLHRRVKFTLTVICRVKCYVLMEAGYS 1066

Query: 643  RWGSERVLNGRTGEIMRSMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF 464
            RWGSE+VLNGRTGE+MRSMIF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF
Sbjct: 1067 RWGSEKVLNGRTGEMMRSMIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF 1126

Query: 463  GGVKFGEMERDCLLAHGAAANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRG 287
            GGVKFGEMERDCLLAHGAAANLHERLF LSDFSQMHIC+TC R ANVI R +  G  +RG
Sbjct: 1127 GGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQTCKRAANVILRPVPGGKKIRG 1186

Query: 286  PYCGFCKSAENIVRVNVPYGAKLLFQELFSMGICLKFETEVC 161
            P+CGFC+SAENIV++NVPYGAKLL+QELFS GICLKFETEVC
Sbjct: 1187 PFCGFCRSAENIVKINVPYGAKLLYQELFSTGICLKFETEVC 1228


>ref|XP_009413518.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Musa
            acuminata subsp. malaccensis]
 ref|XP_009413519.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Musa
            acuminata subsp. malaccensis]
          Length = 1198

 Score = 1760 bits (4559), Expect = 0.0
 Identities = 857/1154 (74%), Positives = 977/1154 (84%), Gaps = 14/1154 (1%)
 Frame = -2

Query: 3580 TNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYDPS 3401
            ++LN+  LEKFCK A++AFF E+GLI HQI+S+N FV  G+Q+LFD+LG+V VEPGYDPS
Sbjct: 45   SDLNIGNLEKFCKEAARAFFKEWGLINHQISSYNDFVEHGIQDLFDTLGDVVVEPGYDPS 104

Query: 3400 KGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEVKV 3221
            K G G WRHASI +G+VRL+KP FW E++D E+  LKLLP+HARLQNMTYSS++KV+V+V
Sbjct: 105  KKGDGAWRHASITFGKVRLEKPEFWPEKNDIEEGSLKLLPRHARLQNMTYSSQMKVKVRV 164

Query: 3220 QVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYDSG 3041
            QV++QEKSDKAK G   YI KRV  +++ EI IG +PVMV+S  CWL  L KSDCL+DSG
Sbjct: 165  QVYVQEKSDKAKIGNSSYIQKRVQNDDEGEITIGRLPVMVQSNLCWLSALGKSDCLFDSG 224

Query: 3040 GYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLNSG 2861
            GYF++KG EK FI QEQRCLTRLW+ D+P  T S  SEIK++R+YVKL++A K +G + G
Sbjct: 225  GYFLIKGMEKTFIGQEQRCLTRLWVIDKPVATVSYLSEIKRKRIYVKLVEAPKAEGFHGG 284

Query: 2860 KLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYEGF 2681
            K+ISVYFLYATMP+WIMFFALGA+SDKEV +MIDL  CD  + NIILATI+DADEQ+EGF
Sbjct: 285  KVISVYFLYATMPIWIMFFALGASSDKEVLEMIDLKDCDAGMINIILATIKDADEQFEGF 344

Query: 2680 RAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLLGYSG 2501
            R+  K+R++VN LIK+AKFPPSESFDEY++KYLFP I GHR KAHFLGY+VKCLLL   G
Sbjct: 345  RSLDKAREHVNALIKNAKFPPSESFDEYVAKYLFPNIIGHRTKAHFLGYMVKCLLLSSFG 404

Query: 2500 KRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIERYWDA 2321
            KRKCDNK+DFRNKRLDL GELLA ELRAHIRHAEKRMV+AMQRDL GDRDLQ IERY DA
Sbjct: 405  KRKCDNKDDFRNKRLDLAGELLARELRAHIRHAEKRMVRAMQRDLSGDRDLQPIERYLDA 464

Query: 2320 SIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAGKAGD 2141
            SIITNGLNRAFSTG W HP++KTER SG+VA L+RTN LQMM+D+R+TR QVAYAGKAGD
Sbjct: 465  SIITNGLNRAFSTGAWTHPYKKTERLSGIVATLRRTNPLQMMSDMRKTRQQVAYAGKAGD 524

Query: 2140 ARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLDQISV 1961
            ARYPNPSYWGKLCFLSTPDGENCGLVKNL+VTA+VSS+  EPILDKL++CGMEKLD+IS+
Sbjct: 525  ARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAVVSSKIMEPILDKLIACGMEKLDEISL 584

Query: 1960 TSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVFTDAG 1781
            +SLS+M KVFLNGDW+GVC D  SF    R MRR++ I  QVEIK D++Q+EVR+FTDAG
Sbjct: 585  SSLSQMHKVFLNGDWVGVCPDMSSFADRLRSMRRAKLIHPQVEIKRDKHQKEVRIFTDAG 644

Query: 1780 RLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQENG 1601
            R+LRP                V SFQSL+++ +IE IGVEEEEDC TAWGI+YLL    G
Sbjct: 645  RILRPLLIVENLKKIRNLKGGVCSFQSLMDQEIIELIGVEEEEDCQTAWGIKYLLAVNEG 704

Query: 1600 --QPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRVDT 1427
               P Y+HC+ DPSF++GLSCGIIPFA+HN+ARRVL+Q++KHS QAIGFSTTNP IRVDT
Sbjct: 705  ISAPNYSHCELDPSFLLGLSCGIIPFASHNFARRVLYQSEKHSQQAIGFSTTNPSIRVDT 764

Query: 1426 LMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHQGYNQEDS 1247
            L H +YYPQ PLF+TVIADCL R DYSLG KD M+RPE FNGQNAIVAVNVHQGYNQEDS
Sbjct: 765  LSHHLYYPQTPLFRTVIADCLVRADYSLGRKDSMTRPEYFNGQNAIVAVNVHQGYNQEDS 824

Query: 1246 LVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLEDDGF 1067
            LVMNR SLERGMFRTEHFRSYKA+VDNKE++KRIK+KDKV F KI+SKKGRVDSL+DDGF
Sbjct: 825  LVMNRTSLERGMFRTEHFRSYKADVDNKELTKRIKLKDKVAFGKIESKKGRVDSLDDDGF 884

Query: 1066 PFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXXXXX 920
            P+IGA LQSGDIVIGKVAESGDDHS KLKHTEKGMVQKVVLS                  
Sbjct: 885  PYIGASLQSGDIVIGKVAESGDDHSIKLKHTEKGMVQKVVLSANDEGKNFAVVTLRQVRS 944

Query: 919  XCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAALGK 740
             CLGDKFSSMHGQKGV+GFLE+QENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAALGK
Sbjct: 945  PCLGDKFSSMHGQKGVIGFLETQENFPFTHQGIVPDIVINPHAFPTRQTPGQLLEAALGK 1004

Query: 739  GIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPTFYQ 560
            GIAC G   YATPF+T SVD IT QLH   + RWGSERVLNGRTGE+M SMIF+GPTFYQ
Sbjct: 1005 GIACEGSKRYATPFSTASVDDITAQLHRAGYSRWGSERVLNGRTGEMMHSMIFMGPTFYQ 1064

Query: 559  RLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFT 380
            RLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLF 
Sbjct: 1065 RLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFM 1124

Query: 379  LSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLFQEL 203
            LSDF QMHIC+ C R  NVI R +  G  +RGPYCGFC+S ENIVR+NVPYGAKLL+QEL
Sbjct: 1125 LSDFFQMHICQKCQRAVNVILRPVPGGKKIRGPYCGFCQSGENIVRINVPYGAKLLYQEL 1184

Query: 202  FSMGICLKFETEVC 161
            FSMGICLKFETEVC
Sbjct: 1185 FSMGICLKFETEVC 1198


>ref|XP_012703111.1| DNA-directed RNA polymerases IV and V subunit 2 [Setaria italica]
 ref|XP_022684018.1| DNA-directed RNA polymerases IV and V subunit 2 [Setaria italica]
 gb|KQK99160.1| hypothetical protein SETIT_009201mg [Setaria italica]
          Length = 1234

 Score = 1672 bits (4329), Expect = 0.0
 Identities = 794/1156 (68%), Positives = 964/1156 (83%), Gaps = 12/1156 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S+   +++VE+LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQ+LFDSLG+V VEPG
Sbjct: 82   SNVPIDMSVESLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQKLFDSLGDVIVEPG 141

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK G G W+HA IK+GRV+L+KP FW+ + + +   +   P+HARLQNMTY+S++KV
Sbjct: 142  YDPSKKGSGGWKHAIIKFGRVKLEKPVFWSGKDEVD---IDFKPRHARLQNMTYASRIKV 198

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            EV ++V+  EKSDK+KTG D ++ KR    E   I IG +PVMVKS  C L  L++SDCL
Sbjct: 199  EVTIKVYSLEKSDKSKTGNDDFVQKRDFMNETHWIYIGRLPVMVKSNLCLLHNLKESDCL 258

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D+GGYF+VKG EK FIAQEQRCL+RLW++D+P WT S  SEIK+RR+Y+KL++++K D 
Sbjct: 259  FDAGGYFLVKGMEKVFIAQEQRCLSRLWISDRPCWTVSFMSEIKRRRIYIKLVESTKSDD 318

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+IS+ FLYATMP+W+MFFALG +SDKEVF +ID+   D  + N I ATI+++DE 
Sbjct: 319  FSGSKIISISFLYATMPIWLMFFALGISSDKEVFDVIDMQDGDASVINTISATIKESDEL 378

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             EGFR + K+R YV+ L+K+++FPP+ESFD+Y+ ++LFP ISGHR KA FLGY+VKCLL+
Sbjct: 379  CEGFRKSDKARQYVDELVKNSRFPPAESFDDYVDRFLFPDISGHRNKALFLGYMVKCLLM 438

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             ++GKRKCDNK+DFRNKRLDL GELLA ELRAHIR AE+RMVKA+QRDL+ DR+LQ +ER
Sbjct: 439  AFTGKRKCDNKDDFRNKRLDLAGELLARELRAHIRLAERRMVKAIQRDLNSDRELQDLER 498

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y DASI+TNGLNRAFSTG WCHP++KTERCSG+VA L+RTN LQM++DLR+TR +VAYAG
Sbjct: 499  YLDASIVTNGLNRAFSTGSWCHPYKKTERCSGIVATLRRTNPLQMISDLRKTRQRVAYAG 558

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSYWGKLCF+STPDGENCGLVKNL+VTA+VSSR  +P+++  +SCGM KL+
Sbjct: 559  KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVEQPLIESFISCGMSKLN 618

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
            +I   ++ +MDK+FLNG+W+G C+DS SFV+  R MRRS  I  QVEIK D++Q+EVRVF
Sbjct: 619  EIPTENIQRMDKIFLNGNWVGCCTDSASFVLRLRCMRRSSLIHPQVEIKRDKHQKEVRVF 678

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            ++AGR+LRP                  SFQ L+ + +IEFIGVEEEED   AWGIR+L  
Sbjct: 679  SEAGRILRPLLVVENLNKIRKPKGRSYSFQELIQQEIIEFIGVEEEEDIQCAWGIRHLFG 738

Query: 1612 QENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
             E    +YTHC+ DPSF++GLSCGIIPFANHN+ARRVL+Q++KHS QAIG+STTNP IRV
Sbjct: 739  SEGEISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 798

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHQGYNQE 1253
            DTL HQ+YYPQRPLFKTVIADCLGR DY++G +D  +RPE FNGQNAIVAVNVHQG+NQE
Sbjct: 799  DTLSHQLYYPQRPLFKTVIADCLGRSDYTIGRRDDFARPEYFNGQNAIVAVNVHQGFNQE 858

Query: 1252 DSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLEDD 1073
            DSLVMNRASLERGMFRTEH RSYKA+V+NK+++KR+K+K+K++F K++SK+GRVD+L+DD
Sbjct: 859  DSLVMNRASLERGMFRTEHLRSYKADVENKDVTKRLKMKEKIDFGKMESKRGRVDNLDDD 918

Query: 1072 GFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXXX 926
            G P+IGA LQ+ DIVIGKV+ESG+DHS KLKHTEKGMVQKV+LS                
Sbjct: 919  GLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 978

Query: 925  XXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAAL 746
               CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAAL
Sbjct: 979  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTRDGIVPDIVINPHAFPTRQTPGQLLEAAL 1038

Query: 745  GKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPTF 566
            GKGIA GG + YATPFTT SVDVI EQLH   F +WG+E V+NGRTGE M+SM+F+GPTF
Sbjct: 1039 GKGIALGGTMRYATPFTTASVDVIAEQLHKAGFSKWGAESVINGRTGERMQSMVFMGPTF 1098

Query: 565  YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL 386
            YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL
Sbjct: 1099 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL 1158

Query: 385  FTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLFQ 209
            F LSDFSQMHIC+ C R ANVI R +  G  +RGPYCGFCKS+ENIVR+NVPYGAKLL+Q
Sbjct: 1159 FMLSDFSQMHICQKCERVANVIMRCVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQ 1218

Query: 208  ELFSMGICLKFETEVC 161
            ELFSMGICLKFETEVC
Sbjct: 1219 ELFSMGICLKFETEVC 1234


>ref|XP_020692708.1| DNA-directed RNA polymerases IV and V subunit 2-like [Dendrobium
            catenatum]
 gb|PKU59764.1| DNA-directed RNA polymerase D subunit 2a [Dendrobium catenatum]
          Length = 1214

 Score = 1667 bits (4317), Expect = 0.0
 Identities = 804/1156 (69%), Positives = 964/1156 (83%), Gaps = 15/1156 (1%)
 Frame = -2

Query: 3586 QKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYD 3407
            ++ ++++E LEKF K AS+AFFNE+GL+ HQINS+N FV +GLQ+LFDSLGEV+VEP Y+
Sbjct: 60   ERLDMSMEMLEKFFKDASRAFFNEYGLVSHQINSYNDFVKNGLQDLFDSLGEVAVEPDYN 119

Query: 3406 PSKG-GGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVE 3230
            P    G G W+HA++ +G+VRL+KP FW E++D E++ LKL PKHARLQNMTYSS++KV+
Sbjct: 120  PQDAKGDGAWKHATVSFGKVRLEKPVFWVEKNDLEEQELKLTPKHARLQNMTYSSQMKVK 179

Query: 3229 VKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLY 3050
            V+VQV++ + SDKAKTG+D  + KRV+ +++ EIV+G +PVMV+S  CWL + +K+DC +
Sbjct: 180  VRVQVYVHQVSDKAKTGQDAGVHKRVVDDKESEIVLGRLPVMVRSDLCWLHSQDKNDCFF 239

Query: 3049 DSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGL 2870
            D GGYF++KG EK FIAQEQRC+TRLW+TD+P WTA   SE+K+RRVY+KLL+++K +G 
Sbjct: 240  DPGGYFLIKGMEKTFIAQEQRCMTRLWITDKPCWTAQYMSEMKRRRVYIKLLESTKAEGN 299

Query: 2869 NSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQY 2690
            +  K+IS+YFLYATMP+WIMFFALG +SDKEVF+M+DL+G  T + N+IL TIRDADE  
Sbjct: 300  SGVKMISLYFLYATMPIWIMFFALGVSSDKEVFEMMDLEGTSTDVVNMILVTIRDADEMC 359

Query: 2689 EGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLLG 2510
            EGFR   K+R++VN LIK AKFPP+ESFDEYI KYLFP I+G R+KA FLGY+ KCLLL 
Sbjct: 360  EGFRRGDKAREFVNKLIKDAKFPPTESFDEYIDKYLFPGITGLRQKALFLGYMAKCLLLS 419

Query: 2509 YSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIERY 2330
            Y GKRKCDNK+DFRNKRL+L G+LL+ EL +HIRHAE+RMVKAMQRDL+GD +LQ IERY
Sbjct: 420  YMGKRKCDNKDDFRNKRLELAGKLLSRELWSHIRHAERRMVKAMQRDLNGDDELQFIERY 479

Query: 2329 WDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAGK 2150
             D+SIITNGLNRAFSTG WCHP+++TER +G+VA L+RTN LQ+++DLR+TR  V YAGK
Sbjct: 480  LDSSIITNGLNRAFSTGQWCHPYKRTERTAGIVATLRRTNPLQLISDLRKTRQSVLYAGK 539

Query: 2149 AGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLDQ 1970
            AGDARYPNPSY+G+LCFLSTPDGENCGLVKNL++TALVS + +E I++KL+SCGM+KL+ 
Sbjct: 540  AGDARYPNPSYFGRLCFLSTPDGENCGLVKNLAITALVSLKKSESIIEKLISCGMDKLEG 599

Query: 1969 ISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVFT 1790
               +SLSK  KV LNG+WIGVC D++ FV  F+  RR+ QI  QVEIK D  Q+EVR+F+
Sbjct: 600  APFSSLSKRIKVLLNGEWIGVCRDAELFVSKFKQRRRAGQIHPQVEIKRDEQQKEVRIFS 659

Query: 1789 DAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQ 1610
            DAGR+LRP                 +SFQSL++  +IE IGVEEEEDC TAWGI+YL ++
Sbjct: 660  DAGRILRPLVIVENLKNVNKFKGGFTSFQSLMDAKIIELIGVEEEEDCRTAWGIKYLYKK 719

Query: 1609 ENGQPA--YTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIR 1436
            +  QP   YTHC+ D SF++ LSCGIIPFANHN+ARRVL+QA+KHS QAIGFSTTNP IR
Sbjct: 720  DEKQPIVNYTHCELDLSFLLALSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTTNPDIR 779

Query: 1435 VDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHQGYNQ 1256
            VDTL HQMYYPQ+PLF+T+ A+CLGR DY LG K    RPELFNGQNAIVAVNVHQGYNQ
Sbjct: 780  VDTLTHQMYYPQKPLFRTLTAECLGRPDYCLG-KGHFVRPELFNGQNAIVAVNVHQGYNQ 838

Query: 1255 EDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLED 1076
            EDSLVMN ASL+RG+FRTEHFRSYKA+VDNKE S R+K KDKV+F K+QSKKGRVDSLED
Sbjct: 839  EDSLVMNEASLQRGLFRTEHFRSYKADVDNKENSVRLKPKDKVDFGKMQSKKGRVDSLED 898

Query: 1075 DGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLSXXXXXXXXC------ 914
            DG P++GA L SGDIVIGKVAESG+DH  KLKHTEKGMVQKV+LS               
Sbjct: 899  DGLPYVGASLNSGDIVIGKVAESGEDHGVKLKHTEKGMVQKVLLSSNDEGKNFAVVTLRQ 958

Query: 913  -----LGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAA 749
                 LGDKFSSMHGQKGV+G LE QENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAA
Sbjct: 959  VRSPRLGDKFSSMHGQKGVIGLLEHQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAA 1018

Query: 748  LGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPT 569
            LGKGIACGG  TYATPF+TPSVD+I +QL    F RWGSE+V+NGRTGE M+SMIF+GPT
Sbjct: 1019 LGKGIACGGSATYATPFSTPSVDIIYDQLQRSGFCRWGSEKVINGRTGEFMQSMIFMGPT 1078

Query: 568  FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHER 389
            FYQRLIHMAEDKVK+RNTGPVHPLTRQPVADRKR+GGVKFGEMERDCLLAHGAAANL+ER
Sbjct: 1079 FYQRLIHMAEDKVKYRNTGPVHPLTRQPVADRKRYGGVKFGEMERDCLLAHGAAANLYER 1138

Query: 388  LFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLF 212
            +FTLSDFS MHIC+TC R ANVIQR +  G  +RGPYC FCKSAENIVR+NVPYGAKLL+
Sbjct: 1139 MFTLSDFSHMHICQTCKRAANVIQRPVLGGRKIRGPYCVFCKSAENIVRINVPYGAKLLY 1198

Query: 211  QELFSMGICLKFETEV 164
            QELFSMGICLKFETE+
Sbjct: 1199 QELFSMGICLKFETEL 1214


>gb|PAN40366.1| hypothetical protein PAHAL_G02501 [Panicum hallii]
 gb|PAN40368.1| hypothetical protein PAHAL_G02501 [Panicum hallii]
          Length = 1233

 Score = 1659 bits (4297), Expect = 0.0
 Identities = 794/1156 (68%), Positives = 958/1156 (82%), Gaps = 12/1156 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S+   +++VE+LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV V+PG
Sbjct: 82   SNVPIDVSVESLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVIVDPG 141

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK   G W+HA IK+GRV+L+KP F + + + +   + L P+HARLQNMTY+SK+KV
Sbjct: 142  YDPSKKVSGSWKHAIIKFGRVKLEKPVFLSGKDEVD---IDLKPRHARLQNMTYASKIKV 198

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            EV +QV+  EKSDK+KTG D ++ KR    E   I IG +PVMVKS  C L + ++SDCL
Sbjct: 199  EVTIQVYSLEKSDKSKTGNDGFVQKRDFMNETHWIYIGRLPVMVKSDLCLLHSHKESDCL 258

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D+GGYF+VKG EK FIAQEQRCL+RLW+ D+P WT S  SEIK+RR+Y+KL++++K + 
Sbjct: 259  FDAGGYFLVKGMEKVFIAQEQRCLSRLWIADRPCWTVSFMSEIKRRRIYIKLVESTKSED 318

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+IS+ FLYATMP+W+MFFALG +SDKE F +ID+  CD  + N I ATI+++D  
Sbjct: 319  FSGSKIISISFLYATMPIWLMFFALGISSDKEAFDVIDMQDCDASVVNTISATIKESDGL 378

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             EGFR + K+R YV+ L+K+++FPP+ESFD+Y+ K+LFP ISG+R KA FLGY+VKCLL+
Sbjct: 379  CEGFRKSDKARQYVDKLVKNSRFPPAESFDDYVDKFLFPDISGYRNKALFLGYMVKCLLM 438

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             + GKRKCDNK+DFRNKRLDL GELL  ELRAHIRHAE+RM+KA+QRDL+ DR+LQ + R
Sbjct: 439  AFIGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERRMIKAIQRDLNSDRELQDLAR 498

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y DASI+TNGLNRAFSTG WCHP+++ ERCSG+VA L+RTN LQMM+DLR+TR +VAYAG
Sbjct: 499  YLDASIVTNGLNRAFSTGSWCHPYKRNERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAG 558

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSYWGKLCF+STPDGENCGLVKNL+VTA+VSSR  +P+++  +SCGM KL+
Sbjct: 559  KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIESFISCGMSKLN 618

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
            +I   S+ +MDK+FLNG+W+G C+DS SFV+  R MRRS  ID QVEIK D++Q+EVRVF
Sbjct: 619  EIPTESIQRMDKIFLNGNWVGSCTDSASFVLRLRCMRRSSLIDPQVEIKRDKHQKEVRVF 678

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            +DAGRLLRP                  SFQ L+ + +IEFIGVEEEED   AWGIR+L  
Sbjct: 679  SDAGRLLRPLLVVENLNKIRKPKGRQYSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFG 738

Query: 1612 QENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
             E    +YTHC+ DPSF++GLSCGIIPFANHN+ARRVL+Q++KHS QAIG+STTNP IRV
Sbjct: 739  SEGEISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 798

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHQGYNQE 1253
            DTL HQ+YYPQRPLFKTVIADCLGR DY++G +D  SRPE FNGQNAIVAVNVHQG+NQE
Sbjct: 799  DTLSHQLYYPQRPLFKTVIADCLGRSDYTIGRRDDFSRPEYFNGQNAIVAVNVHQGFNQE 858

Query: 1252 DSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLEDD 1073
            DSLVMNRASLERGMFRTEH RSYKA+V+NK+ +KR+K K+K++FAK++SK+G VD+L+DD
Sbjct: 859  DSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLK-KEKIDFAKMESKRGCVDNLDDD 917

Query: 1072 GFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXXX 926
            G P+IGA LQ+ DI+IGKV+ESG+DHS KLKHTEKGMVQKV+LS                
Sbjct: 918  GLPYIGASLQTNDIIIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 977

Query: 925  XXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAAL 746
               CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAAL
Sbjct: 978  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAAL 1037

Query: 745  GKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPTF 566
            GKGIA GG + YATPFTT SVDVI EQLH   F +WG+E V+NGRTGE M+S++F+GPTF
Sbjct: 1038 GKGIALGGTMRYATPFTTASVDVIAEQLHKFGFSKWGAESVINGRTGERMQSLVFMGPTF 1097

Query: 565  YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL 386
            YQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL
Sbjct: 1098 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERL 1157

Query: 385  FTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLFQ 209
            F LSDFSQMHIC+TC R ANVI R +  G  +RGPYCGFCKS+ENIVR+NVPYGAKLL+Q
Sbjct: 1158 FMLSDFSQMHICQTCERVANVIMRCVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQ 1217

Query: 208  ELFSMGICLKFETEVC 161
            ELFSMGICLKFETEVC
Sbjct: 1218 ELFSMGICLKFETEVC 1233


>ref|XP_020593256.1| DNA-directed RNA polymerases IV and V subunit 2-like isoform X1
            [Phalaenopsis equestris]
          Length = 1216

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 800/1157 (69%), Positives = 965/1157 (83%), Gaps = 15/1157 (1%)
 Frame = -2

Query: 3589 DQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGY 3410
            D++ ++++E LEKF K AS+AFFNE+GL+ HQINS+N+F+ +GLQELFDSLG V+VEP Y
Sbjct: 62   DEQLDMSLEMLEKFFKGASRAFFNEYGLVSHQINSYNEFIKNGLQELFDSLGAVAVEPDY 121

Query: 3409 DPSKG-GGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            +P      G W+HA++ +G+VRL+KP FW E++D +++ LKL PKHARLQNMTYS+++KV
Sbjct: 122  NPQDAKNDGSWKHATVTFGKVRLEKPVFWVEKNDLDEQELKLTPKHARLQNMTYSAQMKV 181

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            +V+VQV++   SDKAKTG+D  + K ++ +++ EIV+G +PVMV+S  CWL + +K+DC 
Sbjct: 182  KVRVQVYVHRVSDKAKTGQDAGVHKMLVDDKESEIVLGRLPVMVRSDLCWLPSQDKNDCF 241

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D GGYF++KG EK FIAQEQRCLTRLW+TD+P WT    SEIK+RRVY+KLL+++K +G
Sbjct: 242  FDPGGYFLIKGMEKTFIAQEQRCLTRLWITDKPCWTVQYMSEIKRRRVYIKLLESTKAEG 301

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+IS+YFLYATMP+WIMFFALG +SDKEVF+MIDLDG  T + N+ILATIRDAD  
Sbjct: 302  NSGVKMISLYFLYATMPIWIMFFALGVSSDKEVFEMIDLDGTSTDVVNMILATIRDADGM 361

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             EGFR  GK+RD+VN LIK AKFPP+ESFDEYI+K+LFP I+G R+KA FLGY++KCLLL
Sbjct: 362  CEGFRRGGKARDFVNKLIKDAKFPPTESFDEYINKFLFPGITGLRQKALFLGYMIKCLLL 421

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             Y GKRKCDNK+DFRNKRL+L G+LL+ EL +HIRHAE+RMVKAMQRDL+GD +LQ  ER
Sbjct: 422  SYMGKRKCDNKDDFRNKRLELAGKLLSRELWSHIRHAERRMVKAMQRDLNGD-ELQFTER 480

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y D+SIITNGLNRAFSTG WCHP+++TER +G+VA L+RTN LQ+++DLR+TR  V YAG
Sbjct: 481  YLDSSIITNGLNRAFSTGQWCHPYKRTERTAGIVATLRRTNPLQLISDLRKTRQSVLYAG 540

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSY+G+LCFLSTPDGENCGLVKNL++TALVSS+ +E IL+ L+SCGM+KL+
Sbjct: 541  KAGDARYPNPSYFGRLCFLSTPDGENCGLVKNLAITALVSSKLSETILEVLISCGMDKLE 600

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
               ++SLSK  KV LNG+WIGVC D++SFV  F+  RR  QI  QVEIK D +Q+EVR+F
Sbjct: 601  GAPLSSLSKRVKVLLNGEWIGVCRDAESFVSKFKRSRRGGQIHPQVEIKRDDHQKEVRIF 660

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            TDAGR+LRP                 +SFQSL++  +IE IGVEEEEDC TAWG++YL +
Sbjct: 661  TDAGRILRPLVIVENLKNVNKYKGGFASFQSLMDAKIIELIGVEEEEDCRTAWGVKYLFK 720

Query: 1612 QENGQPA--YTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGI 1439
            +++ QP   YTHC+ D SF++ LSCGIIPFANHN+ARRVL+QA+KHS QAIGFSTTNP I
Sbjct: 721  KDDKQPIVNYTHCELDLSFLLALSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTTNPDI 780

Query: 1438 RVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHQGYN 1259
            RVDTL HQMYYPQ+PLF+T+ A+CLG  DY  G K  + RPELFNGQNAIVAVNVH GYN
Sbjct: 781  RVDTLTHQMYYPQKPLFRTMTAECLGMSDYRFG-KGHIVRPELFNGQNAIVAVNVHLGYN 839

Query: 1258 QEDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLE 1079
            QEDSLVMN AS++RG+FRTEHFRSYKA+VDNKE S R+K KDKV+F K+QSK+GRVDSLE
Sbjct: 840  QEDSLVMNEASVQRGLFRTEHFRSYKADVDNKENSLRLKPKDKVDFGKMQSKRGRVDSLE 899

Query: 1078 DDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLSXXXXXXXXC----- 914
            DDG P++GA L SGDIV+GKVAESG+DH  KLKHTEKG+VQKV+LS              
Sbjct: 900  DDGLPYVGAYLNSGDIVVGKVAESGEDHGVKLKHTEKGVVQKVLLSSNDEGKNFAVVTLR 959

Query: 913  ------LGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEA 752
                  LGDKFSSMHGQKGV+G LE QENFPFT  G+VPDIVINPHAFPTRQTPGQLLEA
Sbjct: 960  QVRSPRLGDKFSSMHGQKGVIGLLEHQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEA 1019

Query: 751  ALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGP 572
            ALGKGIACGG  TYATPF+TPSVDVI +QL    F RWGSE+V+NGRTGE+M+SMIF+GP
Sbjct: 1020 ALGKGIACGGSTTYATPFSTPSVDVIYDQLQRSGFCRWGSEKVINGRTGELMQSMIFMGP 1079

Query: 571  TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHE 392
            TFYQRLIHMAEDKVK+RNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANL+E
Sbjct: 1080 TFYQRLIHMAEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLYE 1139

Query: 391  RLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLL 215
            R+FTLSDFSQMHIC+ C R ANVIQR +  G  +RGPYC FCKSAENIVR+NVPYGAKLL
Sbjct: 1140 RMFTLSDFSQMHICQICKRAANVIQRPVLGGRKIRGPYCVFCKSAENIVRINVPYGAKLL 1199

Query: 214  FQELFSMGICLKFETEV 164
            +QELFSMGICLKFETEV
Sbjct: 1200 YQELFSMGICLKFETEV 1216


>ref|XP_020593257.1| DNA-directed RNA polymerases IV and V subunit 2-like isoform X2
            [Phalaenopsis equestris]
          Length = 1198

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 800/1157 (69%), Positives = 965/1157 (83%), Gaps = 15/1157 (1%)
 Frame = -2

Query: 3589 DQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGY 3410
            D++ ++++E LEKF K AS+AFFNE+GL+ HQINS+N+F+ +GLQELFDSLG V+VEP Y
Sbjct: 44   DEQLDMSLEMLEKFFKGASRAFFNEYGLVSHQINSYNEFIKNGLQELFDSLGAVAVEPDY 103

Query: 3409 DPSKG-GGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            +P      G W+HA++ +G+VRL+KP FW E++D +++ LKL PKHARLQNMTYS+++KV
Sbjct: 104  NPQDAKNDGSWKHATVTFGKVRLEKPVFWVEKNDLDEQELKLTPKHARLQNMTYSAQMKV 163

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            +V+VQV++   SDKAKTG+D  + K ++ +++ EIV+G +PVMV+S  CWL + +K+DC 
Sbjct: 164  KVRVQVYVHRVSDKAKTGQDAGVHKMLVDDKESEIVLGRLPVMVRSDLCWLPSQDKNDCF 223

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D GGYF++KG EK FIAQEQRCLTRLW+TD+P WT    SEIK+RRVY+KLL+++K +G
Sbjct: 224  FDPGGYFLIKGMEKTFIAQEQRCLTRLWITDKPCWTVQYMSEIKRRRVYIKLLESTKAEG 283

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+IS+YFLYATMP+WIMFFALG +SDKEVF+MIDLDG  T + N+ILATIRDAD  
Sbjct: 284  NSGVKMISLYFLYATMPIWIMFFALGVSSDKEVFEMIDLDGTSTDVVNMILATIRDADGM 343

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             EGFR  GK+RD+VN LIK AKFPP+ESFDEYI+K+LFP I+G R+KA FLGY++KCLLL
Sbjct: 344  CEGFRRGGKARDFVNKLIKDAKFPPTESFDEYINKFLFPGITGLRQKALFLGYMIKCLLL 403

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             Y GKRKCDNK+DFRNKRL+L G+LL+ EL +HIRHAE+RMVKAMQRDL+GD +LQ  ER
Sbjct: 404  SYMGKRKCDNKDDFRNKRLELAGKLLSRELWSHIRHAERRMVKAMQRDLNGD-ELQFTER 462

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y D+SIITNGLNRAFSTG WCHP+++TER +G+VA L+RTN LQ+++DLR+TR  V YAG
Sbjct: 463  YLDSSIITNGLNRAFSTGQWCHPYKRTERTAGIVATLRRTNPLQLISDLRKTRQSVLYAG 522

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSY+G+LCFLSTPDGENCGLVKNL++TALVSS+ +E IL+ L+SCGM+KL+
Sbjct: 523  KAGDARYPNPSYFGRLCFLSTPDGENCGLVKNLAITALVSSKLSETILEVLISCGMDKLE 582

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
               ++SLSK  KV LNG+WIGVC D++SFV  F+  RR  QI  QVEIK D +Q+EVR+F
Sbjct: 583  GAPLSSLSKRVKVLLNGEWIGVCRDAESFVSKFKRSRRGGQIHPQVEIKRDDHQKEVRIF 642

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            TDAGR+LRP                 +SFQSL++  +IE IGVEEEEDC TAWG++YL +
Sbjct: 643  TDAGRILRPLVIVENLKNVNKYKGGFASFQSLMDAKIIELIGVEEEEDCRTAWGVKYLFK 702

Query: 1612 QENGQPA--YTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGI 1439
            +++ QP   YTHC+ D SF++ LSCGIIPFANHN+ARRVL+QA+KHS QAIGFSTTNP I
Sbjct: 703  KDDKQPIVNYTHCELDLSFLLALSCGIIPFANHNFARRVLYQAEKHSQQAIGFSTTNPDI 762

Query: 1438 RVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFNGQNAIVAVNVHQGYN 1259
            RVDTL HQMYYPQ+PLF+T+ A+CLG  DY  G K  + RPELFNGQNAIVAVNVH GYN
Sbjct: 763  RVDTLTHQMYYPQKPLFRTMTAECLGMSDYRFG-KGHIVRPELFNGQNAIVAVNVHLGYN 821

Query: 1258 QEDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLE 1079
            QEDSLVMN AS++RG+FRTEHFRSYKA+VDNKE S R+K KDKV+F K+QSK+GRVDSLE
Sbjct: 822  QEDSLVMNEASVQRGLFRTEHFRSYKADVDNKENSLRLKPKDKVDFGKMQSKRGRVDSLE 881

Query: 1078 DDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLSXXXXXXXXC----- 914
            DDG P++GA L SGDIV+GKVAESG+DH  KLKHTEKG+VQKV+LS              
Sbjct: 882  DDGLPYVGAYLNSGDIVVGKVAESGEDHGVKLKHTEKGVVQKVLLSSNDEGKNFAVVTLR 941

Query: 913  ------LGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEA 752
                  LGDKFSSMHGQKGV+G LE QENFPFT  G+VPDIVINPHAFPTRQTPGQLLEA
Sbjct: 942  QVRSPRLGDKFSSMHGQKGVIGLLEHQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEA 1001

Query: 751  ALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGP 572
            ALGKGIACGG  TYATPF+TPSVDVI +QL    F RWGSE+V+NGRTGE+M+SMIF+GP
Sbjct: 1002 ALGKGIACGGSTTYATPFSTPSVDVIYDQLQRSGFCRWGSEKVINGRTGELMQSMIFMGP 1061

Query: 571  TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHE 392
            TFYQRLIHMAEDKVK+RNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANL+E
Sbjct: 1062 TFYQRLIHMAEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLYE 1121

Query: 391  RLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLL 215
            R+FTLSDFSQMHIC+ C R ANVIQR +  G  +RGPYC FCKSAENIVR+NVPYGAKLL
Sbjct: 1122 RMFTLSDFSQMHICQICKRAANVIQRPVLGGRKIRGPYCVFCKSAENIVRINVPYGAKLL 1181

Query: 214  FQELFSMGICLKFETEV 164
            +QELFSMGICLKFETEV
Sbjct: 1182 YQELFSMGICLKFETEV 1198


>ref|XP_002468227.1| DNA-directed RNA polymerases IV and V subunit 2 [Sorghum bicolor]
 gb|EER95225.1| hypothetical protein SORBI_3001G448100 [Sorghum bicolor]
          Length = 1228

 Score = 1652 bits (4277), Expect = 0.0
 Identities = 793/1157 (68%), Positives = 953/1157 (82%), Gaps = 13/1157 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S+   +L+VE+LEKFCK AS++FF+E GLI HQINS+N FV+ GLQELFDSLGEV VEPG
Sbjct: 75   SNAPIDLSVESLEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQELFDSLGEVIVEPG 134

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK G G W+HA IK+GRV+L+KP FWT +   ++  +   P HARLQNMTY+S+L V
Sbjct: 135  YDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIV 191

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            EV +QV+  EKSDK+KTG D ++ KR    E   I IG +PVMVKS  C L +L++S+CL
Sbjct: 192  EVNIQVYSLEKSDKSKTGNDGFVQKRDFMNETHWIFIGLLPVMVKSNLCLLHSLKESECL 251

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D+GGYF+VKG EK FIAQE RCL RLW+ D+P W  S  SE+K+RR+Y+KL+++++ + 
Sbjct: 252  FDAGGYFLVKGMEKVFIAQELRCLKRLWIIDRPCWMISFMSEMKRRRIYIKLVESTRSED 311

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+IS+ FLYATMPVW++FFALG +SDKE F +ID+  CD  + N I ATI+++DE 
Sbjct: 312  FSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDEL 371

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             EGFR + K+R YV+ L+KS++FPP+ESFD+YI+++LFP ISG+R KA FLGY+VKCLL+
Sbjct: 372  CEGFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLM 431

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             ++GKRKCDNK+DFRNKRLDL GELL  ELRAH+R AEKRMVKA+QRDL+ DR+LQ +ER
Sbjct: 432  AFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMVKAIQRDLNSDRELQDLER 491

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y DASI+TNGL+RAFSTG WCHP+++ ERCSG+VA L+RTN LQMM+DLR+TR +VAYAG
Sbjct: 492  YIDASIVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAG 551

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSYWGKLCF+STPDGENCGLVKNL+VTA+VSSR  +P+++  +SCGM KL+
Sbjct: 552  KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIESFISCGMSKLN 611

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
             I    + +MDK+FLNG+W+G C DS SFV   R MRRS  ID QVEIK D++ +EVRVF
Sbjct: 612  DIPTEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQVEIKRDKHHKEVRVF 671

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            +DAGR+LRP                  SFQ L+ + +IEFIGVEEEED   AWGIR+L +
Sbjct: 672  SDAGRILRPLLVVENLKKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFE 731

Query: 1612 QENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
             E    +YTHC+ DPSF++GLSCGIIPFANHN+ARRVL+Q++KHS QAIG+STTNP IRV
Sbjct: 732  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 791

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRDY-SLGLKDGMSRPELFNGQNAIVAVNVHQGYNQ 1256
            DTL HQ+YYPQRPLFKTVIADCLGR DY + G KD   RPE FNGQNAIVAVNVHQG+NQ
Sbjct: 792  DTLSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAVNVHQGFNQ 851

Query: 1255 EDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLED 1076
            EDSLVMNRASLERGMFRTEH RSYKA+V+NK+ +KR+K+K+K++F K +SK+GRVD+L+D
Sbjct: 852  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 911

Query: 1075 DGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXX 929
            DG P+IGA LQ+ DIVIGKV+ESG+DHS KLKHTEKGMVQKV+LS               
Sbjct: 912  DGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ 971

Query: 928  XXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAA 749
                CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAA
Sbjct: 972  VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQLLEAA 1031

Query: 748  LGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPT 569
            LGKGIAC G + YATPFTT SVDVI EQLH   + RWG+E VLNGRTGE M+S+IF+GPT
Sbjct: 1032 LGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGTENVLNGRTGERMQSLIFMGPT 1091

Query: 568  FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHER 389
            FYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHER
Sbjct: 1092 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHER 1151

Query: 388  LFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLF 212
            LF LSDFSQMHIC+TC R ANV+ R++S G  +RGPYCGFCKS+ENIVR+NVPYGAKLL+
Sbjct: 1152 LFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPYCGFCKSSENIVRINVPYGAKLLY 1211

Query: 211  QELFSMGICLKFETEVC 161
            QELFSMGICLKF+TEVC
Sbjct: 1212 QELFSMGICLKFDTEVC 1228


>gb|AQK46524.1| DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
 gb|AQK46537.1| DNA-directed RNA polymerases IV and V subunit 2 [Zea mays]
          Length = 1229

 Score = 1650 bits (4274), Expect = 0.0
 Identities = 789/1157 (68%), Positives = 955/1157 (82%), Gaps = 13/1157 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S+   N++VE+LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV VEPG
Sbjct: 76   SNPPINMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPG 135

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK G G W+HA IK+GRV+L+KP FWT +   ++  +   P HARLQNMTY+S+L+V
Sbjct: 136  YDPSKKGSGSWKHAIIKFGRVKLEKPVFWTGK---DEVSVDFKPWHARLQNMTYASRLRV 192

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            EV +QV+  EKSDK+KTG D ++ KR    E   I IG +PVMVKS  C L +L++S+CL
Sbjct: 193  EVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKESECL 252

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D+GGYF+VKG EK FIAQE RCL RLW++D+P WT S  SE+K+RR+Y+KL+++++ + 
Sbjct: 253  FDAGGYFLVKGMEKVFIAQELRCLRRLWISDRPCWTISFMSEMKRRRIYIKLVESTRSED 312

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+IS+ FLYATMPVW++FFALG +SDKE F +ID+  CD  + N I ATI+++DE 
Sbjct: 313  FSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDEL 372

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
              GFR + K+R YV+ L+KS+KFPP ESFD+YI+K+LFP ISG+R KA FLGY+VKCLL+
Sbjct: 373  CGGFRKSDKARQYVDELVKSSKFPPVESFDDYIAKFLFPGISGNRNKALFLGYMVKCLLM 432

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             ++GKRKCDNK+DFRNKRLDL GELL  ELRAH+R AE+RMVKA+QRDL+ DR+LQ +ER
Sbjct: 433  AFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRQAERRMVKAIQRDLNSDRELQDLER 492

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y DASI+TNGLNRAFSTG WCHP+++ ERCSG+VA L+RTN LQMM+DLR+TR +VAYAG
Sbjct: 493  YIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAG 552

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSYWGKLCF+STPDGENCGLVKNL+VT++VSS+  +P+++  +SCGM KL+
Sbjct: 553  KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKVVQPLIESFISCGMNKLN 612

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
             I    + +MDK+FLNG+W+G CSDS SFV   R MRRS  ID QVEIK D++ +EVR+F
Sbjct: 613  DIPTEHIQRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLF 672

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            +DAGR+LRP                  SFQ L+ + +IEFIGVEEEED   AWGIR+L +
Sbjct: 673  SDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFE 732

Query: 1612 QENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
             E    +YTHC+ DPSF++GLSCGIIPFANHN+ARRVL+Q++KHS QAIG+ST+NP IRV
Sbjct: 733  SEGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNPRIRV 792

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRD-YSLGLKDGMSRPELFNGQNAIVAVNVHQGYNQ 1256
            DTL HQ+YYPQRPLFKTVIADCLGR D  + G KD  +RPE FNGQNAIVAVNVHQG+NQ
Sbjct: 793  DTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGFNQ 852

Query: 1255 EDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLED 1076
            EDSLVMNRASLERGMFRTEH RSYKA+V+NK+ +KR+K+K+K++F K +SK+GRVD+L+D
Sbjct: 853  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 912

Query: 1075 DGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXX 929
            DG P+IGA LQ+ DIVIGKV+ESG+DHS KLKHTEKGMVQKV+LS               
Sbjct: 913  DGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ 972

Query: 928  XXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAA 749
                CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAA
Sbjct: 973  VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQLLEAA 1032

Query: 748  LGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPT 569
            LGKGIAC G + YATPFTT SVDVI EQLH   + RWG+E VLNGRTGE M+S++F+GPT
Sbjct: 1033 LGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVFMGPT 1092

Query: 568  FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHER 389
            FYQRLIHM+EDKVK+RNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHER
Sbjct: 1093 FYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHER 1152

Query: 388  LFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLF 212
            LF LSDFSQMHIC+TC R ANV+ R++  G  +RGPYCGFCKS+ENIVR+NVPYGAKLL+
Sbjct: 1153 LFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLY 1212

Query: 211  QELFSMGICLKFETEVC 161
            QELFSMGICLKFETEVC
Sbjct: 1213 QELFSMGICLKFETEVC 1229


>ref|XP_015636222.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Oryza
            sativa Japonica Group]
 dbj|BAS91258.1| Os04g0641000 [Oryza sativa Japonica Group]
          Length = 1252

 Score = 1649 bits (4269), Expect = 0.0
 Identities = 795/1176 (67%), Positives = 952/1176 (80%), Gaps = 37/1176 (3%)
 Frame = -2

Query: 3577 NLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYDPSK 3398
            ++++ +LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV+VEP YDPS 
Sbjct: 77   DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 136

Query: 3397 GGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEVKVQ 3218
             G G WRHA IK+GRV+L++P FW+   D +++ LKL P+HARLQNMTYSSK+KVEV  Q
Sbjct: 137  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 196

Query: 3217 VFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYDSGG 3038
            V+  EKSDKAKTG D +  KR +  E   I IG +PVMV S  CWL  L++SDC +DSGG
Sbjct: 197  VYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGG 256

Query: 3037 YFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLNSGK 2858
            YF++KG EK FIAQEQ+CLTR+W+ D+P W  S  S I++RR+Y+KL+D++  +  + GK
Sbjct: 257  YFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGGK 316

Query: 2857 LISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYEGFR 2678
            +IS+ FLYA MP+W+MFFALG +SDK++F +I+++ CD  + N I ATI+++DE  EGFR
Sbjct: 317  IISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFR 376

Query: 2677 AAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLLGYSGK 2498
             + K+R YV+ LIK++KFPP+E FD+YI+KYLFP+ISG+R KA FLGY+VKCLL+ ++GK
Sbjct: 377  KSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGK 436

Query: 2497 RKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIERYWDAS 2318
            RKCDNK+DFRNKRLDL GELL  ELRAHIRHAE+ MVKA+QRDL+ +R+LQ  + Y DAS
Sbjct: 437  RKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDAS 496

Query: 2317 IITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAGKAGDA 2138
            IITNGLNRAFSTG WCHP+++ ERC+G+VA L+RTN LQM++DLR+TR +VAYAGKAGDA
Sbjct: 497  IITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDA 556

Query: 2137 RYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLDQISVT 1958
            RYPNPSYWGKLCF+STPDGENCGLVKNL+VTA VSSR   P++D+ +SCGM KL +I   
Sbjct: 557  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTE 616

Query: 1957 SLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVFTDAGR 1778
             + +MDK+FLNGDW+G CSD  SFV+  R MRRS  ID QVEIK D++QREVRVF+DAGR
Sbjct: 617  EVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGR 676

Query: 1777 LLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQENGQ 1598
            +LRP                  SFQ L+ + +IEFIGVEEEED  +AWGIR L + E   
Sbjct: 677  ILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEA 736

Query: 1597 P----------------------AYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQK 1484
            P                       YTHC+ D SF++GLSCGIIPFANHN+ARRVL+Q++K
Sbjct: 737  PMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEK 796

Query: 1483 HSHQAIGFSTTNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFN 1304
            HS QAIG+STTNP IRVDTL HQ+YYPQRPLFKTVIADC+GR +Y+ G KD  +RPE FN
Sbjct: 797  HSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFN 856

Query: 1303 GQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNK---EMSKRIKIKD 1133
            GQNAIVAVNVHQG+NQEDSLVMNRASLERGMFRTEHFR+YKAEV+NK     +KR+K+KD
Sbjct: 857  GQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKD 916

Query: 1132 KVEFAKIQSKKGRVDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQK 953
            K++F K+QSK+GRVD+L+DDG P++GA LQSGDIVIGKV+ESG+DHS KLKHTEKGMVQ+
Sbjct: 917  KIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQR 976

Query: 952  VVLS-----------XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIV 806
            V+LS                   CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIV
Sbjct: 977  VLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIV 1036

Query: 805  INPHAFPTRQTPGQLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSER 626
            INPHAFPTRQTPGQLLEAALGKGIA GG + YATPFTT S DVIT+QLH   F RWG+E 
Sbjct: 1037 INPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAES 1096

Query: 625  VLNGRTGEIMRSMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 446
            VLNGRTGE M S+IF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG
Sbjct: 1097 VLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 1156

Query: 445  EMERDCLLAHGAAANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFC 269
            EMERDCLLAHGAAANLHERLF LSDFSQMH+C+TC R ANVI R +  G  +RGPYCGFC
Sbjct: 1157 EMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFC 1216

Query: 268  KSAENIVRVNVPYGAKLLFQELFSMGICLKFETEVC 161
            +S+ENIVR+NVPYGAKLL+QELFSMGICL+FETEVC
Sbjct: 1217 RSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1252


>ref|NP_001338873.1| required to maintain repression 7 [Zea mays]
 gb|ADB19857.1| required to maintain repression 7/RNA polymerase D second largest
            subunit [Zea mays]
 gb|ADI24118.1| RPD2/E2a [Zea mays]
 gb|ONM13141.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13145.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13149.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13152.1| nuclear RNA polymerase D2/E2 [Zea mays]
 gb|ONM13153.1| nuclear RNA polymerase D2/E2 [Zea mays]
          Length = 1229

 Score = 1649 bits (4269), Expect = 0.0
 Identities = 790/1157 (68%), Positives = 953/1157 (82%), Gaps = 13/1157 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S+   +++VE+LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV VEPG
Sbjct: 76   SNAPIDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPG 135

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK G G W+HA IK+GRV+L+KP FWT +   ++  +   P HARLQNMTY+S+L V
Sbjct: 136  YDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIV 192

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            EV +QV+  EKSDK+KTG D ++ KR    E   I IG +PVMVKS  C L +L +S+CL
Sbjct: 193  EVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECL 252

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D+GGYF+VKG EK FIAQEQRCL RLW++D+P WT S  SEIK+RR+Y+KL+++++ + 
Sbjct: 253  FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSED 312

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+I++ FLYATMPVW++FFALG +SDKEVF MID+  CD  + N I ATI+++D+ 
Sbjct: 313  FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKL 372

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             E FR + K+R YV+ L+KS++FPP+ESFD+YI+++LFP ISG+R KA FLGY+VKCLL+
Sbjct: 373  CEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLM 432

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             ++GKRKCDNK+DFRNKRLDL GELL  ELRA +R AEKRMVKA+QRDL+ DR+LQ +ER
Sbjct: 433  AFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLER 492

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y DASI+TNGLNRAFSTG WCHP+++ ERCSG+VA L+RTN LQMM+DLR+TR +VAYAG
Sbjct: 493  YIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAG 552

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSYWGKLCF+STPDGENCGLVKNL+VTA+VSSR  +P+++  +SCGM KL+
Sbjct: 553  KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLN 612

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
             I    + +MDK+FLNG+W+G C +S SFV   R MRRS  ID QVEIK D++  EVRVF
Sbjct: 613  DIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVF 672

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            TDAGR+LRP                  SF  L+ + +IEFIGVEEEED   AWGIR+L +
Sbjct: 673  TDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFE 732

Query: 1612 QENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
             E    +YTHC+ DPSF++GLSCGIIPFANHN+ARRVL+Q++KHS QAIG+STTNP IRV
Sbjct: 733  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 792

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRDY-SLGLKDGMSRPELFNGQNAIVAVNVHQGYNQ 1256
            DTL HQ+YYPQRPLFKTVIADCLGR DY S G K+  +RPE FNGQNAIVAVNVHQG+NQ
Sbjct: 793  DTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQ 852

Query: 1255 EDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLED 1076
            EDSLVMNRASLERGMFRTEH RSYKA+V+NK+ +KR+K+K+K++F K +SK+GRVD+L+D
Sbjct: 853  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 912

Query: 1075 DGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXX 929
            DG P++GA LQ+ DIVIGKV+ESG+DHS KLKHTEKGMVQKV+LS               
Sbjct: 913  DGLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ 972

Query: 928  XXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAA 749
                CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAA
Sbjct: 973  VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1032

Query: 748  LGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPT 569
            LGKGIAC G + YATPFTT SVDVI EQLH   + RWGSE VLNGRTGE ++S++F+GPT
Sbjct: 1033 LGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPT 1092

Query: 568  FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHER 389
            FYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHER
Sbjct: 1093 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHER 1152

Query: 388  LFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLF 212
            LF LSDFSQMHIC+TC R ANV+ R++  G  +RGPYCGFCKS+ENIVR+NVPYGAKLL+
Sbjct: 1153 LFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLY 1212

Query: 211  QELFSMGICLKFETEVC 161
            QELFSMGICLKFET+VC
Sbjct: 1213 QELFSMGICLKFETQVC 1229


>ref|XP_002447199.1| DNA-directed RNA polymerases IV and V subunit 2 [Sorghum bicolor]
 gb|EES11527.1| hypothetical protein SORBI_3006G236000 [Sorghum bicolor]
 gb|KXG27149.2| hypothetical protein SORBI_3006G236000 [Sorghum bicolor]
          Length = 1239

 Score = 1649 bits (4269), Expect = 0.0
 Identities = 787/1157 (68%), Positives = 953/1157 (82%), Gaps = 13/1157 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S+   +++VE+LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV VEPG
Sbjct: 86   SNAPIDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPG 145

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK G G W+HA IK+GRV+L+KP FWT +   ++  +   P HARLQNMTY+S+LKV
Sbjct: 146  YDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLKV 202

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            EV +QV+  EKSDK+KTG + ++ KR    E   I IG +PVMVKS  C L +L++S+CL
Sbjct: 203  EVTIQVYSLEKSDKSKTGNEGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKESECL 262

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D+GGYF+VKG EK FIAQEQRCL RLW++D+P W  S   EIK+RR+Y+KL+++++ + 
Sbjct: 263  FDAGGYFLVKGMEKVFIAQEQRCLKRLWVSDRPFWMISFMHEIKRRRIYIKLVESTRSED 322

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+IS+ FLYATMPVW++FFALG +SDKE F +ID+  CD  + N I ATI+++DE 
Sbjct: 323  FSGSKVISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDEL 382

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             +GFR + K+R YV+ L+KS++FPP+ESFD+Y++++LFP I+G+R KA FLGY+VKCLL+
Sbjct: 383  CKGFRKSDKARQYVDELVKSSRFPPAESFDDYVARFLFPDINGNRNKAFFLGYMVKCLLM 442

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             ++GKRKCDNK+DFRNKRLDL GELL  ELRA +R  E+RMVKA+QRDL+ DR+LQ +ER
Sbjct: 443  AFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMVKAIQRDLNNDRELQDLER 502

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y DASI+TNGLNRAFSTG WCHP+++ ERCSG+VA L+RTN LQMM+DLR+TR +VAYAG
Sbjct: 503  YIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAG 562

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNL+VTA+VSSR  +P+++  +SCGM KL+
Sbjct: 563  KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVGQPLIESFISCGMSKLN 622

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
             I    + +MDK+FLNG+W+G C DS SFV   R MRRS  ID QVEIK D++ +EVRVF
Sbjct: 623  DIPTEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVF 682

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            +DAGR+LRP                  SFQ L+ + +IEFIGVEEEED   AWGIR+L +
Sbjct: 683  SDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFE 742

Query: 1612 QENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
             E    +YTHC+ DPSF+MGLSCGIIPFANHN+ARRVL+Q++KHS QAIG+STTNP IRV
Sbjct: 743  SEGAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 802

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRDY-SLGLKDGMSRPELFNGQNAIVAVNVHQGYNQ 1256
            DTL HQ+YYPQRPLFKTVIADCLGR DY + G KD  +RPE FNGQNAIVAVNVHQG+NQ
Sbjct: 803  DTLSHQLYYPQRPLFKTVIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQ 862

Query: 1255 EDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLED 1076
            EDSLVMNRASLERGMFRTEH RSYK +V+NK+ +KR+K+K+K++F K +SK+GRVD+L+D
Sbjct: 863  EDSLVMNRASLERGMFRTEHLRSYKTDVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 922

Query: 1075 DGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXX 929
            DG P+IGA LQ+ DIVIGKV+ESG+DHS KLKHTEKGMVQKV+LS               
Sbjct: 923  DGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ 982

Query: 928  XXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAA 749
                CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAA
Sbjct: 983  VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1042

Query: 748  LGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPT 569
            LGKGIAC G + YATPFTT SVDVI EQLH   + RWG+E VLNGRTGE M+S++F+GPT
Sbjct: 1043 LGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMQSLVFMGPT 1102

Query: 568  FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHER 389
            FYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHER
Sbjct: 1103 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHER 1162

Query: 388  LFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLF 212
            LF LSDFSQMHIC+TC R ANV+ R++  G  +RGPYCGFCKS+ENIVR+NVPYGAKLL+
Sbjct: 1163 LFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLY 1222

Query: 211  QELFSMGICLKFETEVC 161
            QELFSMGICLKF+TEVC
Sbjct: 1223 QELFSMGICLKFDTEVC 1239


>dbj|BAF15955.1| Os04g0641000, partial [Oryza sativa Japonica Group]
          Length = 1270

 Score = 1647 bits (4266), Expect = 0.0
 Identities = 794/1176 (67%), Positives = 952/1176 (80%), Gaps = 37/1176 (3%)
 Frame = -2

Query: 3577 NLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYDPSK 3398
            ++++ +LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV+VEP YDPS 
Sbjct: 95   DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 154

Query: 3397 GGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEVKVQ 3218
             G G WRHA IK+GRV+L++P FW+   D +++ LKL P+HARLQNMTYSSK+KVEV  Q
Sbjct: 155  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 214

Query: 3217 VFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYDSGG 3038
            V+  EKSDKAKTG D +  KR +  E   I IG +PVMV S  CWL  L++SDC +DSGG
Sbjct: 215  VYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGG 274

Query: 3037 YFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLNSGK 2858
            YF++KG EK FIAQEQ+CLTR+W+ D+P W  S  S I++RR+Y+KL+D++  +  + GK
Sbjct: 275  YFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGGK 334

Query: 2857 LISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYEGFR 2678
            +IS+ FLYA MP+W+MFFALG +SDK++F +I+++ CD  + N I ATI+++DE  EGFR
Sbjct: 335  IISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFR 394

Query: 2677 AAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLLGYSGK 2498
             + K+R YV+ LIK++KFPP+E FD+YI+KYLFP+ISG+R KA FLGY+VKCLL+ ++GK
Sbjct: 395  KSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGK 454

Query: 2497 RKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIERYWDAS 2318
            RKCDNK+DFRNKRLDL GELL  ELRAHIRHAE+ MVKA+QRDL+ +R+LQ  + Y DAS
Sbjct: 455  RKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDAS 514

Query: 2317 IITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAGKAGDA 2138
            IITNGLNRAFSTG WCHP+++ ERC+G+VA L+RTN LQM++DLR+TR +VAYAGKAGDA
Sbjct: 515  IITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDA 574

Query: 2137 RYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLDQISVT 1958
            RYPNPSYWGKLCF+STPDGENCGLVKNL+VTA VSSR   P++D+ +SCGM KL +I   
Sbjct: 575  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTE 634

Query: 1957 SLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVFTDAGR 1778
             + +MDK+FLNGDW+G CSD  SFV+  R MRRS  ID QVEIK D++QREVRVF+DAGR
Sbjct: 635  EVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGR 694

Query: 1777 LLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQENGQ 1598
            +LRP                  SFQ L+ + +IEFIGVEEEED  +AWGIR L + E   
Sbjct: 695  ILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEA 754

Query: 1597 P----------------------AYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQK 1484
            P                       YTHC+ D SF++GLSCGIIPFANHN+ARRVL+Q++K
Sbjct: 755  PMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEK 814

Query: 1483 HSHQAIGFSTTNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFN 1304
            HS QAIG+STTNP IRVDTL HQ+YYPQRPLFKTVIADC+GR +Y+ G KD  +RPE FN
Sbjct: 815  HSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFN 874

Query: 1303 GQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNK---EMSKRIKIKD 1133
            GQNAIVAVNVHQG+NQEDS+VMNRASLERGMFRTEHFR+YKAEV+NK     +KR+K+KD
Sbjct: 875  GQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKD 934

Query: 1132 KVEFAKIQSKKGRVDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQK 953
            K++F K+QSK+GRVD+L+DDG P++GA LQSGDIVIGKV+ESG+DHS KLKHTEKGMVQ+
Sbjct: 935  KIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQR 994

Query: 952  VVLS-----------XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIV 806
            V+LS                   CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIV
Sbjct: 995  VLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIV 1054

Query: 805  INPHAFPTRQTPGQLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSER 626
            INPHAFPTRQTPGQLLEAALGKGIA GG + YATPFTT S DVIT+QLH   F RWG+E 
Sbjct: 1055 INPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAES 1114

Query: 625  VLNGRTGEIMRSMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 446
            VLNGRTGE M S+IF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG
Sbjct: 1115 VLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 1174

Query: 445  EMERDCLLAHGAAANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFC 269
            EMERDCLLAHGAAANLHERLF LSDFSQMH+C+TC R ANVI R +  G  +RGPYCGFC
Sbjct: 1175 EMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFC 1234

Query: 268  KSAENIVRVNVPYGAKLLFQELFSMGICLKFETEVC 161
            +S+ENIVR+NVPYGAKLL+QELFSMGICL+FETEVC
Sbjct: 1235 RSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1270


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score = 1647 bits (4266), Expect = 0.0
 Identities = 794/1176 (67%), Positives = 952/1176 (80%), Gaps = 37/1176 (3%)
 Frame = -2

Query: 3577 NLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYDPSK 3398
            ++++ +LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV+VEP YDPS 
Sbjct: 141  DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 200

Query: 3397 GGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEVKVQ 3218
             G G WRHA IK+GRV+L++P FW+   D +++ LKL P+HARLQNMTYSSK+KVEV  Q
Sbjct: 201  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 260

Query: 3217 VFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYDSGG 3038
            V+  EKSDKAKTG D +  KR +  E   I IG +PVMV S  CWL  L++SDC +DSGG
Sbjct: 261  VYSMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGG 320

Query: 3037 YFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLNSGK 2858
            YF++KG EK FIAQEQ+CLTR+W+ D+P W  S  S I++RR+Y+KL+D++  +  + GK
Sbjct: 321  YFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGGK 380

Query: 2857 LISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYEGFR 2678
            +IS+ FLYA MP+W+MFFALG +SDK++F +I+++ CD  + N I ATI+++DE  EGFR
Sbjct: 381  IISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFR 440

Query: 2677 AAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLLGYSGK 2498
             + K+R YV+ LIK++KFPP+E FD+YI+KYLFP+ISG+R KA FLGY+VKCLL+ ++GK
Sbjct: 441  KSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGK 500

Query: 2497 RKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIERYWDAS 2318
            RKCDNK+DFRNKRLDL GELL  ELRAHIRHAE+ MVKA+QRDL+ +R+LQ  + Y DAS
Sbjct: 501  RKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDAS 560

Query: 2317 IITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAGKAGDA 2138
            IITNGLNRAFSTG WCHP+++ ERC+G+VA L+RTN LQM++DLR+TR +VAYAGKAGDA
Sbjct: 561  IITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDA 620

Query: 2137 RYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLDQISVT 1958
            RYPNPSYWGKLCF+STPDGENCGLVKNL+VTA VSSR   P++D+ +SCGM KL +I   
Sbjct: 621  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTE 680

Query: 1957 SLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVFTDAGR 1778
             + +MDK+FLNGDW+G CSD  SFV+  R MRRS  ID QVEIK D++QREVRVF+DAGR
Sbjct: 681  EVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGR 740

Query: 1777 LLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQENGQ 1598
            +LRP                  SFQ L+ + +IEFIGVEEEED  +AWGIR L + E   
Sbjct: 741  ILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEA 800

Query: 1597 P----------------------AYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQK 1484
            P                       YTHC+ D SF++GLSCGIIPFANHN+ARRVL+Q++K
Sbjct: 801  PMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEK 860

Query: 1483 HSHQAIGFSTTNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELFN 1304
            HS QAIG+STTNP IRVDTL HQ+YYPQRPLFKTVIADC+GR +Y+ G KD  +RPE FN
Sbjct: 861  HSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFN 920

Query: 1303 GQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNK---EMSKRIKIKD 1133
            GQNAIVAVNVHQG+NQEDS+VMNRASLERGMFRTEHFR+YKAEV+NK     +KR+K+KD
Sbjct: 921  GQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKD 980

Query: 1132 KVEFAKIQSKKGRVDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQK 953
            K++F K+QSK+GRVD+L+DDG P++GA LQSGDIVIGKV+ESG+DHS KLKHTEKGMVQ+
Sbjct: 981  KIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQR 1040

Query: 952  VVLS-----------XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIV 806
            V+LS                   CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIV
Sbjct: 1041 VLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIV 1100

Query: 805  INPHAFPTRQTPGQLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSER 626
            INPHAFPTRQTPGQLLEAALGKGIA GG + YATPFTT S DVIT+QLH   F RWG+E 
Sbjct: 1101 INPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAES 1160

Query: 625  VLNGRTGEIMRSMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 446
            VLNGRTGE M S+IF+GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG
Sbjct: 1161 VLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFG 1220

Query: 445  EMERDCLLAHGAAANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFC 269
            EMERDCLLAHGAAANLHERLF LSDFSQMH+C+TC R ANVI R +  G  +RGPYCGFC
Sbjct: 1221 EMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFC 1280

Query: 268  KSAENIVRVNVPYGAKLLFQELFSMGICLKFETEVC 161
            +S+ENIVR+NVPYGAKLL+QELFSMGICL+FETEVC
Sbjct: 1281 RSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1316


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score = 1645 bits (4261), Expect = 0.0
 Identities = 789/1157 (68%), Positives = 952/1157 (82%), Gaps = 13/1157 (1%)
 Frame = -2

Query: 3592 SDQKTNLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPG 3413
            S+   +++VE+LEKFCK AS++FF+E GLI HQINS+N+FV+ GLQELFDSLGEV VEPG
Sbjct: 76   SNAPIDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPG 135

Query: 3412 YDPSKGGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKV 3233
            YDPSK G G W+HA IK+GRV+L+KP FWT +   ++  +   P HARLQNMTY+S+L V
Sbjct: 136  YDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGK---DEGSVDFKPWHARLQNMTYASRLIV 192

Query: 3232 EVKVQVFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCL 3053
            EV +QV+  EKSDK+KTG D ++ KR    E   I IG +PVMVKS  C L +L +S+CL
Sbjct: 193  EVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECL 252

Query: 3052 YDSGGYFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDG 2873
            +D+GGYF+VKG EK FIAQEQRCL RLW++D+P WT S  SEIK+RR+Y+KL+++++ + 
Sbjct: 253  FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSED 312

Query: 2872 LNSGKLISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQ 2693
             +  K+I++ FLYATMPVW++FFALG +SDKEVF MID+  CD  + N I ATI+++D+ 
Sbjct: 313  FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKL 372

Query: 2692 YEGFRAAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLL 2513
             E FR + K+R YV+ L+KS++FPP+ESFD+YI+++LFP ISG+R KA FLGY+VKCLL+
Sbjct: 373  CEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLM 432

Query: 2512 GYSGKRKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIER 2333
             ++GKRKCDNK+DFRNKRLDL GELL  ELRA +R AEKRMVKA+QRDL+ DR+LQ +ER
Sbjct: 433  AFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLER 492

Query: 2332 YWDASIITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAG 2153
            Y DASI+TNGLNRAFSTG WCHP+++ ERCSG+VA L+RTN LQMM+DLR+TR +VAYAG
Sbjct: 493  YIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAG 552

Query: 2152 KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLD 1973
            KAGDARYPNPSYW KLCF+STPDGENCGLVKNL+VTA+VSSR  +P+++  +SCGM KL+
Sbjct: 553  KAGDARYPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLN 612

Query: 1972 QISVTSLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVF 1793
             I    + +MDK+FLNG+W+G C +S SFV   R MRRS  ID QVEIK D++  EVRVF
Sbjct: 613  DIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVF 672

Query: 1792 TDAGRLLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQ 1613
            TDAGR+LRP                  SF  L+ + +IEFIGVEEEED   AWGIR+L +
Sbjct: 673  TDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFE 732

Query: 1612 QENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQKHSHQAIGFSTTNPGIRV 1433
             E    +YTHC+ DPSF++GLSCGIIPFANHN+ARRVL+Q++KHS QAIG+STTNP IRV
Sbjct: 733  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 792

Query: 1432 DTLMHQMYYPQRPLFKTVIADCLGRRDY-SLGLKDGMSRPELFNGQNAIVAVNVHQGYNQ 1256
            DTL HQ+YYPQRPLFKTVIADCLGR DY S G K+  +RPE FNGQNAIVAVNVHQG+NQ
Sbjct: 793  DTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQ 852

Query: 1255 EDSLVMNRASLERGMFRTEHFRSYKAEVDNKEMSKRIKIKDKVEFAKIQSKKGRVDSLED 1076
            EDSLVMNRASLERGMFRTEH RSYKA+V+NK+ +KR+K+K+K++F K +SK+GRVD+L+D
Sbjct: 853  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 912

Query: 1075 DGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQKVVLS-----------XXXX 929
            DG P++GA LQ+ DIVIGKV+ESG+DHS KLKHTEKGMVQKV+LS               
Sbjct: 913  DGLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQ 972

Query: 928  XXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDIVINPHAFPTRQTPGQLLEAA 749
                CLGDKFSSMHGQKGVVGFLESQENFPFT  G+VPDIVINPHAFPTRQTPGQLLEAA
Sbjct: 973  VRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAA 1032

Query: 748  LGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSERVLNGRTGEIMRSMIFIGPT 569
            LGKGIAC G + YATPFTT SVDVI EQLH   + RWGSE VLNGRTGE ++S++F+GPT
Sbjct: 1033 LGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPT 1092

Query: 568  FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHER 389
            FYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG+AANLHER
Sbjct: 1093 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHER 1152

Query: 388  LFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGFCKSAENIVRVNVPYGAKLLF 212
            LF LSDFSQMHIC+TC R ANV+ R++  G  +RGPYCGFCKS+ENIVR+NVPYGAKLL+
Sbjct: 1153 LFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLY 1212

Query: 211  QELFSMGICLKFETEVC 161
            QELFSMGICLKFET+VC
Sbjct: 1213 QELFSMGICLKFETQVC 1229


>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Oryza brachyantha]
          Length = 1250

 Score = 1644 bits (4256), Expect = 0.0
 Identities = 793/1177 (67%), Positives = 947/1177 (80%), Gaps = 38/1177 (3%)
 Frame = -2

Query: 3577 NLNVETLEKFCKHASQAFFNEFGLIGHQINSFNQFVTSGLQELFDSLGEVSVEPGYDPSK 3398
            ++++ +LEKFCK AS++FF+E GLI HQINS+N FV  GLQELFDSLGEV+VEP YDPS 
Sbjct: 77   DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNDFVAYGLQELFDSLGEVTVEPSYDPSN 136

Query: 3397 GGGGDWRHASIKYGRVRLDKPSFWTERSDQEDECLKLLPKHARLQNMTYSSKLKVEVKVQ 3218
             G G WRHA IK+GRV+L++P FW    D ++E LKL P+HARLQNMTYSSK+KVEV +Q
Sbjct: 137  RGPGGWRHAIIKFGRVKLEEPVFWAHGYDIDEESLKLKPRHARLQNMTYSSKMKVEVHIQ 196

Query: 3217 VFIQEKSDKAKTGKDPYISKRVLTEEKKEIVIGSIPVMVKSKQCWLDTLEKSDCLYDSGG 3038
            V+  EKSDKAKTG D +  K+ +  E   I  G +PVMV S  CWL  L++SDC +DSGG
Sbjct: 197  VYSMEKSDKAKTGNDKFSYKKDIINETHYINFGRLPVMVMSNLCWLHKLKESDCQFDSGG 256

Query: 3037 YFIVKGAEKAFIAQEQRCLTRLWLTDQPTWTASLGSEIKKRRVYVKLLDASKIDGLNSGK 2858
            YF++KG EK FIAQEQ+CLTR+W+ ++P WT S  S I++RR+Y+KL+D++K +     K
Sbjct: 257  YFLIKGMEKVFIAQEQKCLTRIWVEERPCWTVSFLSAIRRRRIYIKLIDSTKNE---DRK 313

Query: 2857 LISVYFLYATMPVWIMFFALGATSDKEVFQMIDLDGCDTKLTNIILATIRDADEQYEGFR 2678
            +IS+ FLYA MP+W+MFFALG TSDK+VF +ID+  CD  + N I ATI+++DE  EGFR
Sbjct: 314  IISISFLYANMPIWLMFFALGITSDKDVFDVIDMQDCDACVINTISATIKESDELCEGFR 373

Query: 2677 AAGKSRDYVNNLIKSAKFPPSESFDEYISKYLFPTISGHREKAHFLGYIVKCLLLGYSGK 2498
             + ++R YV+ LIK +KFPP E FD+Y+++YLFP ISG+R KA FLGY+VKCLL+ ++GK
Sbjct: 374  KSDRARQYVDELIKDSKFPPGEPFDDYVARYLFPGISGNRNKALFLGYMVKCLLMAFTGK 433

Query: 2497 RKCDNKEDFRNKRLDLVGELLATELRAHIRHAEKRMVKAMQRDLHGDRDLQLIERYWDAS 2318
            RKCDNK+DFRNKRLDL GELL  ELRAHIRHAE+ MVKA+QRDL+ DR+LQ ++RY DAS
Sbjct: 434  RKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSDRELQELDRYLDAS 493

Query: 2317 IITNGLNRAFSTGHWCHPFRKTERCSGVVANLQRTNALQMMADLRRTRLQVAYAGKAGDA 2138
            IITNGLNRAFSTG WCHP++K ERC+G+VA L+RTN LQM++DLR+TR +VAYAGKAGDA
Sbjct: 494  IITNGLNRAFSTGSWCHPYKKNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDA 553

Query: 2137 RYPNPSYWGKLCFLSTPDGENCGLVKNLSVTALVSSRTNEPILDKLVSCGMEKLDQISVT 1958
            RYPNPSYWGKLCF+STPDGENCGLVKNL+VTA+VSSR  +P++++ +SCGM KL +I   
Sbjct: 554  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAVVSSRVAQPVINRFISCGMNKLHEIPTE 613

Query: 1957 SLSKMDKVFLNGDWIGVCSDSKSFVVSFRHMRRSQQIDSQVEIKLDRYQREVRVFTDAGR 1778
             + KMDK+FLNGDW+G C+D  SFV+  R MRRS  I  QVEIK D++QREVRVF+DAGR
Sbjct: 614  EVPKMDKIFLNGDWVGSCTDPASFVLRLRCMRRSGLIGPQVEIKWDKHQREVRVFSDAGR 673

Query: 1777 LLRPXXXXXXXXXXXXXXXXVSSFQSLVNEGLIEFIGVEEEEDCITAWGIRYLLQQ---- 1610
            +LRP                  SFQSL+ + +IEFIGVEEEED  +AWGIR+L       
Sbjct: 674  ILRPLLVVENLNKIRRPKGGSYSFQSLMQQEIIEFIGVEEEEDTKSAWGIRHLFGSEGEK 733

Query: 1609 -------------------ENGQPAYTHCDFDPSFVMGLSCGIIPFANHNYARRVLFQAQ 1487
                               E G   YTHC+ D SF++GLSCGIIPFANHN+ARRVL+Q++
Sbjct: 734  AALVKTNRTEDAFTIRRDIEEGVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSE 793

Query: 1486 KHSHQAIGFSTTNPGIRVDTLMHQMYYPQRPLFKTVIADCLGRRDYSLGLKDGMSRPELF 1307
            KHS QAIG+STTNP IRVDTL HQ+YYPQRPLFKTV+ADC+GR +Y+ G KD  +RPE F
Sbjct: 794  KHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVVADCIGRSEYTFGRKDDFARPEYF 853

Query: 1306 NGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHFRSYKAEVDNKEM---SKRIKIK 1136
            NGQNAIVAVNVHQG+NQEDSLVMNRASLERGMFRTEHFR+YKAEV+NK     +KR+K+K
Sbjct: 854  NGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEVENKSAPGGNKRLKMK 913

Query: 1135 DKVEFAKIQSKKGRVDSLEDDGFPFIGACLQSGDIVIGKVAESGDDHSTKLKHTEKGMVQ 956
            DK++F K+QSK+GRVD+L+DDG P++GA LQSGDIVIGKV+ESG+DHS KLKHTEKGMVQ
Sbjct: 914  DKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQ 973

Query: 955  KVVLS-----------XXXXXXXXCLGDKFSSMHGQKGVVGFLESQENFPFTSAGVVPDI 809
            +V+LS                   CLGDKFSSMHGQKGV+GFLESQENFPFT  G+VPDI
Sbjct: 974  RVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDI 1033

Query: 808  VINPHAFPTRQTPGQLLEAALGKGIACGGKVTYATPFTTPSVDVITEQLHSLKFQRWGSE 629
            VINPHAFPTRQTPGQLLEAALGKGIA GG + YATPFTT S DVIT+QLH   F RWG+E
Sbjct: 1034 VINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAE 1093

Query: 628  RVLNGRTGEIMRSMIFIGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 449
             VLNGRTGE M S+IF+GP FYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF
Sbjct: 1094 SVLNGRTGERMHSLIFMGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKF 1153

Query: 448  GEMERDCLLAHGAAANLHERLFTLSDFSQMHICRTCSRPANVIQRALSNG-NVRGPYCGF 272
            GEMERDCLLAHGAAANLHERLF LSDFSQMHIC+TC R ANVI R +  G  +RGPYCGF
Sbjct: 1154 GEMERDCLLAHGAAANLHERLFMLSDFSQMHICQTCERVANVIMRPVPGGKKIRGPYCGF 1213

Query: 271  CKSAENIVRVNVPYGAKLLFQELFSMGICLKFETEVC 161
            C+S+ENI R+NVPYGAKLL+QELFSMGICL+FETEVC
Sbjct: 1214 CRSSENIARINVPYGAKLLYQELFSMGICLRFETEVC 1250