BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00002807
         (1986 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020261344.1| RNA polymerase sigma factor sigF, chloroplas...   751   0.0  
ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,...   603   0.0  
ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF,...   585   0.0  
ref|XP_020085184.1| RNA polymerase sigma factor sigF, chloroplas...   568   0.0  
ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF,...   558   0.0  
ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF,...   545   0.0  
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   547   0.0  
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   544   0.0  
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   544   0.0  
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   533   0.0  
gb|OVA18028.1| RNA polymerase sigma-70 [Macleaya cordata]             518   e-174
emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]     508   e-171
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   508   e-170
ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF,...   506   e-170
ref|XP_020592220.1| RNA polymerase sigma factor sigF, chloroplas...   496   e-166
ref|XP_020592221.1| RNA polymerase sigma factor sigF, chloroplas...   495   e-166
ref|XP_020592218.1| RNA polymerase sigma factor sigF, chloroplas...   496   e-166
ref|XP_020592217.1| RNA polymerase sigma factor sigF, chloroplas...   496   e-166
ref|XP_020592222.1| RNA polymerase sigma factor sigF, chloroplas...   494   e-166
ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplas...   495   e-165

>ref|XP_020261344.1| RNA polymerase sigma factor sigF, chloroplastic [Asparagus
            officinalis]
 gb|ONK72278.1| uncharacterized protein A4U43_C04F17680 [Asparagus officinalis]
          Length = 582

 Score =  751 bits (1940), Expect = 0.0
 Identities = 384/552 (69%), Positives = 439/552 (79%), Gaps = 6/552 (1%)
 Frame = -3

Query: 1816 TLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVV------KHDGV 1655
            ++LMLHDQA+RP+T LP TS+ RQFP SV P E  ++Y + ++   K+V      +H   
Sbjct: 31   SVLMLHDQATRPVTFLPATSIVRQFPPSVYPQESNSNYNSCLVKEGKMVQATLDRRHAED 90

Query: 1654 GLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXS 1475
            GL +CEE EKQKFD+YLKY ERRLLYQPG+   FT P S ENKYL              +
Sbjct: 91   GLSICEESEKQKFDQYLKYLERRLLYQPGLCSPFTVPCSEENKYLAMSSESVNSGANILA 150

Query: 1474 GSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNG 1295
            GS Q LV Q + SSVQPG VLALAK+A++ASRKAA LA+KS+ILE E  +P  +GLD+N 
Sbjct: 151  GSDQSLVLQNSLSSVQPGSVLALAKKAMLASRKAASLADKSSILESELREPYFIGLDINR 210

Query: 1294 FTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDP 1115
            FT+E+ + +ET +                      V EVS A + +L  K++K LNTDDP
Sbjct: 211  FTEEVAINEETTVRSKRRLERQSKRRKVPKKPENAVYEVSGAMLVDLKKKVQKALNTDDP 270

Query: 1114 FRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSC 935
            FRLFLWGPETKQLLTVKEEKDLFL+IQELM+LE  KQRL+MQFG EPTLAEWAGA+GMSC
Sbjct: 271  FRLFLWGPETKQLLTVKEEKDLFLNIQELMKLEGSKQRLQMQFGREPTLAEWAGAVGMSC 330

Query: 934  QVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPK 755
            Q LQSCLRSG RSREKMIYANFRLVIHVA+QYEGKGLNIQDLLQEGS+GLMKSLEKFKPK
Sbjct: 331  QTLQSCLRSGNRSREKMIYANFRLVIHVAKQYEGKGLNIQDLLQEGSKGLMKSLEKFKPK 390

Query: 754  AGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKEL 575
            +GCRF +YAYWWIRQSIRKAIFQNSRTVRLPENVF LLKK RD RRLCIQEGH P N+EL
Sbjct: 391  SGCRFSSYAYWWIRQSIRKAIFQNSRTVRLPENVFALLKKIRDARRLCIQEGHIPCNQEL 450

Query: 574  AHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQH 395
            +  VGIRVEKLE LL N+RNP SIQERAW+DQDVT QEITADPEVE PDLMIAKQMMR+H
Sbjct: 451  SKLVGIRVEKLESLLMNSRNPLSIQERAWLDQDVTFQEITADPEVETPDLMIAKQMMREH 510

Query: 394  VHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLS 215
            VHNLLGVLN RERQIIKFR+GI D++PKSLS+IGAMY ++KERVRQLESRA DKLKGCLS
Sbjct: 511  VHNLLGVLNHRERQIIKFRFGIQDNKPKSLSDIGAMYDLSKERVRQLESRALDKLKGCLS 570

Query: 214  SHGLEAYINLLI 179
            S GLEAYI++LI
Sbjct: 571  SEGLEAYIDMLI 582


>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
            guineensis]
          Length = 570

 Score =  603 bits (1554), Expect = 0.0
 Identities = 328/548 (59%), Positives = 394/548 (71%), Gaps = 5/548 (0%)
 Frame = -3

Query: 1807 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGV----GLPLC 1640
            MLHDQAS   TS+PTT +A  FP SVL HE  +DYKT  I+ E+    D      G    
Sbjct: 30   MLHDQASWTNTSVPTTPIACHFPISVLSHEQHDDYKTNCISKEEKNVQDNQQVRSGRSCY 89

Query: 1639 EEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQI 1460
            EE+EK +F +YL+Y +++LLY    WY F +  + E   L                SK +
Sbjct: 90   EEKEKCEFAQYLRYSKQQLLYHQVFWYPFLSLYTEEKTPLAMAVEPIKSD------SKGV 143

Query: 1459 LVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEI 1280
             +E   +  V+P +VLALAKRA+MASRKAA L E+SNIL  EF +   L L+  G T +I
Sbjct: 144  QLENC-ADFVRPTEVLALAKRAMMASRKAASLMEESNILAAEFDESHFLSLNHRGSTVDI 202

Query: 1279 VLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGL-NTDDPFRLF 1103
             +++   +                     V  EVS    +++  KI+KGL N +DP RLF
Sbjct: 203  SIKEVMAVRSKRLLERRSKKRKVGKNSNNVAREVSKLMTSDMKEKIDKGLINQNDPLRLF 262

Query: 1102 LWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSCQVLQ 923
            LWGPETKQLLTVKEEKDLF+ IQ+++RLEEV+QRL++QF  EPTL+EWA A+GMSCQVLQ
Sbjct: 263  LWGPETKQLLTVKEEKDLFVQIQDVVRLEEVQQRLRLQFDREPTLSEWAKAVGMSCQVLQ 322

Query: 922  SCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPKAGCR 743
            SCL SGKRSREKMI AN RLV+HVA+QYEGKGL++QDLLQEGSRGLMKSLEKFKPKAGCR
Sbjct: 323  SCLSSGKRSREKMINANLRLVVHVAKQYEGKGLSVQDLLQEGSRGLMKSLEKFKPKAGCR 382

Query: 742  FPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKELAHRV 563
            F TYAYWWIRQSIR+AIF NSR +RLPENVFGLLK+ ++ RRL IQEGH PTN+E+A RV
Sbjct: 383  FATYAYWWIRQSIRRAIFLNSRVIRLPENVFGLLKRIKNARRLFIQEGHAPTNEEIAKRV 442

Query: 562  GIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQHVHNL 383
            GI VEKLE LL  TRNP SIQE  W DQDV  QEITADP VE P+L IAKQMMRQHV  L
Sbjct: 443  GISVEKLEALLLTTRNPISIQECVWTDQDVKFQEITADPGVETPELSIAKQMMRQHVRGL 502

Query: 382  LGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLSSHGL 203
            L +L  RERQII++R+GI ++E KSL+EIGAM+G++KERVRQLESRA DKLKGCL SHGL
Sbjct: 503  LRILKPRERQIIQYRFGIPNNEQKSLTEIGAMFGLSKERVRQLESRALDKLKGCLPSHGL 562

Query: 202  EAYINLLI 179
             AY+ LL+
Sbjct: 563  GAYLELLL 570


>ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Musa
            acuminata subsp. malaccensis]
          Length = 577

 Score =  585 bits (1507), Expect = 0.0
 Identities = 315/550 (57%), Positives = 382/550 (69%), Gaps = 7/550 (1%)
 Frame = -3

Query: 1807 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIING-EKVVKHDG------VGL 1649
            ML DQAS+P+  +P T +     +SVL  E  +D KT  +N  EK V+          G 
Sbjct: 31   MLLDQASQPMIHVPATQVVHHITASVLSKEQCDDLKTNHLNKVEKSVQATPDKWLTEAGR 90

Query: 1648 PLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGS 1469
               EEREK +F++YL+Y E +L YQP +WY F  P   E K                SG 
Sbjct: 91   SCSEEREKHEFNQYLRYLECQLSYQPSLWYPF--PPLDEEKQSLPVSVGPEETSTCVSGD 148

Query: 1468 KQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFT 1289
               +  + T   + P DVLALAK+A++AS+ AA L E+SNIL  E  +   LG D  G  
Sbjct: 149  SSAMQVENTKDCITPADVLALAKKAMIASKIAASLVEQSNILGIEVDKSNFLGFD-EGSN 207

Query: 1288 QEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDPFR 1109
             +   ++ET +                      V   +S+     + KI+K L+++DP R
Sbjct: 208  DDTFFKEETTVRSRKLLERRSKKRKVSKNPNNFVHHGASSVTINQSKKIDKRLDSNDPLR 267

Query: 1108 LFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSCQV 929
            LFLWGPETKQLLTVKEEKDLF+ I++LMRLEEVK+RL+ Q   EPTLAEWA A+GMSCQ 
Sbjct: 268  LFLWGPETKQLLTVKEEKDLFVKIEDLMRLEEVKERLQSQSDREPTLAEWAQAVGMSCQD 327

Query: 928  LQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPKAG 749
            LQSCL SG+R+REKMIYANFRLV+HVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKP+AG
Sbjct: 328  LQSCLSSGRRNREKMIYANFRLVVHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPRAG 387

Query: 748  CRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKELAH 569
            CRFPTYAYWWIRQSI+KAIF+NSRT+RLPEN F  LK  R+ RRLCIQEG  PTN+E+A 
Sbjct: 388  CRFPTYAYWWIRQSIKKAIFKNSRTIRLPENAFARLKSIREARRLCIQEGLLPTNEEIAK 447

Query: 568  RVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQHVH 389
            RVGI V+KLE LL N+R P SIQ   W+DQDVT QE  ADP++EIPDL+IAKQMMRQHV 
Sbjct: 448  RVGITVQKLEILLLNSRYPISIQRHPWLDQDVTFQETVADPKIEIPDLVIAKQMMRQHVR 507

Query: 388  NLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLSSH 209
            NLL +L  RER I+++R+GI  SE KSLSEIGAMYG++KERVRQLES+A  KL+ CL S 
Sbjct: 508  NLLNILKPRERVIVQYRFGIRCSEQKSLSEIGAMYGLSKERVRQLESQALGKLRKCLQSQ 567

Query: 208  GLEAYINLLI 179
            GLEAY++LLI
Sbjct: 568  GLEAYLDLLI 577


>ref|XP_020085184.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Ananas
            comosus]
 ref|XP_020085185.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Ananas
            comosus]
          Length = 573

 Score =  568 bits (1465), Expect = 0.0
 Identities = 301/549 (54%), Positives = 391/549 (71%), Gaps = 6/549 (1%)
 Frame = -3

Query: 1807 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHD------GVGLP 1646
            M+ + ASR +TS+ T+SL  + P+S+L  E  +D K   +  EKV +        G   P
Sbjct: 28   MISEHASRIVTSMTTSSLVHRLPASLLSLEQHHDRKDYYLKEEKVSQATLDKQKVGDSKP 87

Query: 1645 LCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSK 1466
            LCEE E+ +F +YL+YF+R+L+ +PG+W   T  +      +              + S 
Sbjct: 88   LCEENEEYEFGQYLEYFQRQLISRPGLWPQPTINKENTTSIMSKELSVHHSNSTKVAESI 147

Query: 1465 QILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQ 1286
            Q+     +  S+ P  VL+LAK+A+MA+RKA LLA+KSNIL     +    G+    F++
Sbjct: 148  QL---GNSPDSLSPAVVLSLAKKAMMATRKATLLAQKSNILSAVLDEQHFSGVSDKEFSE 204

Query: 1285 EIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDPFRL 1106
            EI ++   ++                     +  EV+S    +++ KI+K L+++DP +L
Sbjct: 205  EISIKKGKIVKSKRLLERRSKKRKASKSPSSIGYEVASLKSIDISKKIDKRLDSNDPLKL 264

Query: 1105 FLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSCQVL 926
            FL GPETKQLLT+KEEKDL + IQ+++RLE VKQRL++QFGHEPTLAEWA ++GMSCQVL
Sbjct: 265  FLRGPETKQLLTLKEEKDLIIQIQDVIRLEGVKQRLELQFGHEPTLAEWARSVGMSCQVL 324

Query: 925  QSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPKAGC 746
            QSCL SG+RSREK+IYANFRLVIHVA+QYEGKGL++QDLLQEGSRGL+KSLEKFKP+AGC
Sbjct: 325  QSCLCSGRRSREKIIYANFRLVIHVAKQYEGKGLSLQDLLQEGSRGLIKSLEKFKPQAGC 384

Query: 745  RFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKELAHR 566
            RFP+YAYWWIRQSIRKAIFQ+SRT+RLPENVFGLL+K +  R+L IQ G+ P N+E+A  
Sbjct: 385  RFPSYAYWWIRQSIRKAIFQHSRTIRLPENVFGLLRKVKAARKLYIQGGYLPANEEIAKC 444

Query: 565  VGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQHVHN 386
            VGI  +KLE LL   RNP  I++R W DQDVT+QEITADPEVEIPDL I+K MMR+HV N
Sbjct: 445  VGITSQKLESLLLRARNPVPIRKRVWTDQDVTLQEITADPEVEIPDLNISKAMMREHVRN 504

Query: 385  LLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLSSHG 206
             L +LN RER+II++R+GI D E KSL+EIG MYG++KERVRQLESRA DKLK  L S G
Sbjct: 505  FLRILNPRERKIIQYRFGIHDGERKSLTEIGRMYGLSKERVRQLESRALDKLKESLPSQG 564

Query: 205  LEAYINLLI 179
            LEAY++LLI
Sbjct: 565  LEAYLHLLI 573


>ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Phoenix dactylifera]
          Length = 529

 Score =  558 bits (1438), Expect = 0.0
 Identities = 294/487 (60%), Positives = 352/487 (72%)
 Frame = -3

Query: 1639 EEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQI 1460
            +E+ K +  + L+YFE +LLY    WY F +  + E   L                  ++
Sbjct: 50   KEKAKCEVAQCLRYFEHQLLYHQVFWYPFLSLYTEEKTPLAMSTEPIK-------SDSKL 102

Query: 1459 LVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEI 1280
            +  +  +  V+P DVLALAKRA+ ASRKAA L E+SNIL  EF +   LGL+  G T +I
Sbjct: 103  VPLENCADFVRPADVLALAKRAMRASRKAASLMEESNILAAEFDESHFLGLNHRGSTMDI 162

Query: 1279 VLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDPFRLFL 1100
             +++E  +                     V  EVS +    +N KI+KGL+ +DP RLFL
Sbjct: 163  SIKEEVAVRSKRLLERRSKKRKVGKNSKNVACEVSKSMTTGMNKKIDKGLDPNDPLRLFL 222

Query: 1099 WGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSCQVLQS 920
            WGPETKQLLTVKEEKDLF+ IQ+LMRLEEV+QRL++QF  EPTL+EWA A+GMSCQ LQ 
Sbjct: 223  WGPETKQLLTVKEEKDLFVQIQDLMRLEEVQQRLRLQFDREPTLSEWAQAVGMSCQALQC 282

Query: 919  CLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRF 740
            CL SGKRSREKMI AN RLV+HVA+QYEGKGLNI DLLQEGSRGLMKSLEKFKPK GCRF
Sbjct: 283  CLSSGKRSREKMINANLRLVVHVAKQYEGKGLNILDLLQEGSRGLMKSLEKFKPKVGCRF 342

Query: 739  PTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKELAHRVG 560
             TYAYWWIRQSIRKAIF NSR +RLPENVFGLLK  +  RRL IQEGH PTN+E+A +VG
Sbjct: 343  STYAYWWIRQSIRKAIFLNSRVIRLPENVFGLLKSIKKARRLFIQEGHAPTNEEIAKQVG 402

Query: 559  IRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQHVHNLL 380
            I VE+L+ LL  TRNP SIQE AW DQDVT QEIT DPEVE PDL +AKQMMRQHV  LL
Sbjct: 403  ISVERLKVLLLTTRNPISIQECAWTDQDVTFQEITGDPEVETPDLSMAKQMMRQHVRGLL 462

Query: 379  GVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLSSHGLE 200
             +L  RERQII++R+GI +++PKSL+EIG M+G++KERVRQLESRA DKLK C  SHGL 
Sbjct: 463  RILKPRERQIIQYRFGIPNNKPKSLTEIGVMFGLSKERVRQLESRALDKLKDCRLSHGLG 522

Query: 199  AYINLLI 179
            AY+ LL+
Sbjct: 523  AYLELLL 529


>ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Phoenix dactylifera]
          Length = 466

 Score =  545 bits (1403), Expect = 0.0
 Identities = 280/418 (66%), Positives = 325/418 (77%)
 Frame = -3

Query: 1432 VQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEIVLEDETMIX 1253
            V+P DVLALAKRA+ ASRKAA L E+SNIL  EF +   LGL+  G T +I +++E  + 
Sbjct: 49   VRPADVLALAKRAMRASRKAASLMEESNILAAEFDESHFLGLNHRGSTMDISIKEEVAVR 108

Query: 1252 XXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDPFRLFLWGPETKQLL 1073
                                V  EVS +    +N KI+KGL+ +DP RLFLWGPETKQLL
Sbjct: 109  SKRLLERRSKKRKVGKNSKNVACEVSKSMTTGMNKKIDKGLDPNDPLRLFLWGPETKQLL 168

Query: 1072 TVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSCQVLQSCLRSGKRSR 893
            TVKEEKDLF+ IQ+LMRLEEV+QRL++QF  EPTL+EWA A+GMSCQ LQ CL SGKRSR
Sbjct: 169  TVKEEKDLFVQIQDLMRLEEVQQRLRLQFDREPTLSEWAQAVGMSCQALQCCLSSGKRSR 228

Query: 892  EKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRFPTYAYWWIR 713
            EKMI AN RLV+HVA+QYEGKGLNI DLLQEGSRGLMKSLEKFKPK GCRF TYAYWWIR
Sbjct: 229  EKMINANLRLVVHVAKQYEGKGLNILDLLQEGSRGLMKSLEKFKPKVGCRFSTYAYWWIR 288

Query: 712  QSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKELAHRVGIRVEKLERL 533
            QSIRKAIF NSR +RLPENVFGLLK  +  RRL IQEGH PTN+E+A +VGI VE+L+ L
Sbjct: 289  QSIRKAIFLNSRVIRLPENVFGLLKSIKKARRLFIQEGHAPTNEEIAKQVGISVERLKVL 348

Query: 532  LSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQHVHNLLGVLNRRERQ 353
            L  TRNP SIQE AW DQDVT QEIT DPEVE PDL +AKQMMRQHV  LL +L  RERQ
Sbjct: 349  LLTTRNPISIQECAWTDQDVTFQEITGDPEVETPDLSMAKQMMRQHVRGLLRILKPRERQ 408

Query: 352  IIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLSSHGLEAYINLLI 179
            II++R+GI +++PKSL+EIG M+G++KERVRQLESRA DKLK C  SHGL AY+ LL+
Sbjct: 409  IIQYRFGIPNNKPKSLTEIGVMFGLSKERVRQLESRALDKLKDCRLSHGLGAYLELLL 466


>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  547 bits (1409), Expect = 0.0
 Identities = 297/569 (52%), Positives = 389/569 (68%), Gaps = 16/569 (2%)
 Frame = -3

Query: 1837 QPKHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVVK- 1667
            Q K+  +++ +LH+QA+  + S+PTTS+ R FP+SVL  E ++D +   +II  +K  + 
Sbjct: 19   QLKNSSSSVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQA 78

Query: 1666 -------HDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXX 1508
                    D V L   EE++  + D Y + FER+LLY PG+WYL  +   GE   L    
Sbjct: 79   MLDRRKLEDKVHL--YEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS--- 133

Query: 1507 XXXXXXXXXXSGSKQILVEQTTSSS------VQPGDVLALAKRAVMASRKAALLAEKSNI 1346
                            +V Q+T++       V+P D L LAK+AV+AS++AA LA+   +
Sbjct: 134  ----------------MVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYEL 177

Query: 1345 LEFEFGQPPLLGLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSAT 1166
               +  +  L  L+      +I L +E  +                      VSE S++ 
Sbjct: 178  FGADSHESFLPDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVV-VSEASTSR 236

Query: 1165 IAELNTKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQF 986
             ++++ KI +G +T+DP RLFLWGPETKQLLT KEE +LF+H+QEL+RLEEVKQRL+ QF
Sbjct: 237  KSDIHKKIHEGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQF 296

Query: 985  GHEPTLAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLL 806
              EPTL EWA A+GM+CQ LQS L SG  SREK+IYANFRLV+HVA+ Y+G+GLN+QDLL
Sbjct: 297  DREPTLVEWAEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLL 356

Query: 805  QEGSRGLMKSLEKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRD 626
            QEGS GLMKSLEKFKP+AGCRF TYAYWWIRQ+IRKAIFQNSRT+RLPENV+ LL + + 
Sbjct: 357  QEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKK 416

Query: 625  ERRLCIQEGHFPTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADP 446
             ++L IQEGH PTN+ELA RVGI VEKLERL  +TR P SIQ+  W DQD T QEITAD 
Sbjct: 417  AKKLFIQEGHHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADT 476

Query: 445  EVEIPDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKER 266
            EVE PDL +AKQ+MR+HV NL+ +L  +ER+II+ RYGI+++EPKSL EIG+++G++KER
Sbjct: 477  EVEKPDLCVAKQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKER 536

Query: 265  VRQLESRAFDKLKGCLSSHGLEAYINLLI 179
            VRQLESRA  KLK CLSS GL AY +LL+
Sbjct: 537  VRQLESRALHKLKQCLSSQGLGAYADLLV 565


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  544 bits (1401), Expect = 0.0
 Identities = 295/559 (52%), Positives = 383/559 (68%), Gaps = 16/559 (2%)
 Frame = -3

Query: 1807 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVVK--------HDG 1658
            +LH+QA+  + S+PTTS+ R FP+SVL  E ++D +   +II  +K  +         D 
Sbjct: 4    LLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDK 63

Query: 1657 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXX 1478
            V L   EE++  + D Y + FER+LLY PG+WYL  +   GE   L              
Sbjct: 64   VHL--YEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS------------- 108

Query: 1477 SGSKQILVEQTTSSS------VQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPL 1316
                  +V Q+T++       V+P D L LAK+AV+AS++AA LA+   +   +  +  L
Sbjct: 109  ------MVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFL 162

Query: 1315 LGLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEK 1136
              L+      +I L +E  +                      VSE S++  ++++ KI +
Sbjct: 163  PDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVV-VSEASTSRKSDIHKKIHE 221

Query: 1135 GLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWA 956
            G +T+DP RLFLWGPETKQLLT KEE +LF+H+QEL+RLEEVKQRL+ QF  EPTL EWA
Sbjct: 222  GFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWA 281

Query: 955  GALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKS 776
             A+GM+CQ LQS L SG  SREK+IYANFRLV+HVA+ Y+G+GLN+QDLLQEGS GLMKS
Sbjct: 282  EAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKS 341

Query: 775  LEKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGH 596
            LEKFKP+AGCRF TYAYWWIRQ+IRKAIFQNSRT+RLPENV+ LL + +  ++L IQEGH
Sbjct: 342  LEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGH 401

Query: 595  FPTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIA 416
             PTN+ELA RVGI VEKLERL  +TR P SIQ+  W DQD T QEITAD EVE PDL +A
Sbjct: 402  HPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVA 461

Query: 415  KQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFD 236
            KQ+MR+HV NL+ +L  +ER+II+ RYGI+++EPKSL EIG+++G++KERVRQLESRA  
Sbjct: 462  KQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALH 521

Query: 235  KLKGCLSSHGLEAYINLLI 179
            KLK CLSS GL AY +LL+
Sbjct: 522  KLKQCLSSQGLGAYADLLV 540


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  544 bits (1401), Expect = 0.0
 Identities = 295/559 (52%), Positives = 383/559 (68%), Gaps = 16/559 (2%)
 Frame = -3

Query: 1807 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVVK--------HDG 1658
            +LH+QA+  + S+PTTS+ R FP+SVL  E ++D +   +II  +K  +         D 
Sbjct: 32   LLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDK 91

Query: 1657 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXX 1478
            V L   EE++  + D Y + FER+LLY PG+WYL  +   GE   L              
Sbjct: 92   VHL--YEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS------------- 136

Query: 1477 SGSKQILVEQTTSSS------VQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPL 1316
                  +V Q+T++       V+P D L LAK+AV+AS++AA LA+   +   +  +  L
Sbjct: 137  ------MVTQSTAAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFL 190

Query: 1315 LGLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEK 1136
              L+      +I L +E  +                      VSE S++  ++++ KI +
Sbjct: 191  PDLEPRNLANKIPLREEVAVRSKRLLERQSKRRWIPRPKVV-VSEASTSRKSDIHKKIHE 249

Query: 1135 GLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWA 956
            G +T+DP RLFLWGPETKQLLT KEE +LF+H+QEL+RLEEVKQRL+ QF  EPTL EWA
Sbjct: 250  GFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWA 309

Query: 955  GALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKS 776
             A+GM+CQ LQS L SG  SREK+IYANFRLV+HVA+ Y+G+GLN+QDLLQEGS GLMKS
Sbjct: 310  EAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKS 369

Query: 775  LEKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGH 596
            LEKFKP+AGCRF TYAYWWIRQ+IRKAIFQNSRT+RLPENV+ LL + +  ++L IQEGH
Sbjct: 370  LEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGH 429

Query: 595  FPTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIA 416
             PTN+ELA RVGI VEKLERL  +TR P SIQ+  W DQD T QEITAD EVE PDL +A
Sbjct: 430  HPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVA 489

Query: 415  KQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFD 236
            KQ+MR+HV NL+ +L  +ER+II+ RYGI+++EPKSL EIG+++G++KERVRQLESRA  
Sbjct: 490  KQLMRRHVRNLISILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALH 549

Query: 235  KLKGCLSSHGLEAYINLLI 179
            KLK CLSS GL AY +LL+
Sbjct: 550  KLKQCLSSQGLGAYADLLV 568


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  533 bits (1373), Expect = 0.0
 Identities = 290/547 (53%), Positives = 374/547 (68%), Gaps = 16/547 (2%)
 Frame = -3

Query: 1771 LPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVVK--------HDGVGLPLCEEREKQ 1622
            +PTTS+ R FP+SVL  E ++D +   +II  +K  +         D V L   EE++  
Sbjct: 1    MPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHL--YEEKKSC 58

Query: 1621 KFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGSKQILVEQTT 1442
            + D Y + FER+LLY PG+WYL  +   GE   L                    +V Q+T
Sbjct: 59   QPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLS-------------------MVTQST 99

Query: 1441 SSS------VQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFTQEI 1280
            ++       V+P D L LAK+AV+AS++AA LA+   +   +  +  L  L+      +I
Sbjct: 100  AAGTVKNVDVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLANKI 159

Query: 1279 VLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDPFRLFL 1100
             L +E  +                      VSE S++  ++++ KI +G +T+DP RLFL
Sbjct: 160  PLREEVAVRSKRLLERQSKRRWIPRPKVV-VSEASTSRKSDIHKKIHEGFDTNDPLRLFL 218

Query: 1099 WGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSCQVLQS 920
            WGPETKQLLT KEE +LF+H+QEL+RLEEVKQRL+ QF  EPTL EWA A+GM+CQ LQS
Sbjct: 219  WGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQS 278

Query: 919  CLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPKAGCRF 740
             L SG  SREK+IYANFRLV+HVA+ Y+G+GLN+QDLLQEGS GLMKSLEKFKP+AGCRF
Sbjct: 279  ILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRF 338

Query: 739  PTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKELAHRVG 560
             TYAYWWIRQ+IRKAIFQNSRT+RLPENV+ LL + +  ++L IQEGH PTN+ELA RVG
Sbjct: 339  ATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVG 398

Query: 559  IRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQHVHNLL 380
            I VEKLERL  +TR P SIQ+  W DQD T QEITAD EVE PDL +AKQ+MR+HV NL+
Sbjct: 399  ITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLI 458

Query: 379  GVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLSSHGLE 200
             +L  +ER+II+ RYGI+++EPKSL EIG+++G++KERVRQLESRA  KLK CLSS GL 
Sbjct: 459  SILPPKERRIIRMRYGIENNEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLG 518

Query: 199  AYINLLI 179
            AY +LL+
Sbjct: 519  AYADLLV 525


>gb|OVA18028.1| RNA polymerase sigma-70 [Macleaya cordata]
          Length = 562

 Score =  518 bits (1335), Expect = e-174
 Identities = 283/554 (51%), Positives = 376/554 (67%), Gaps = 9/554 (1%)
 Frame = -3

Query: 1816 TLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRI-INGEKVVKHD------G 1658
            ++ MLH+ A+  +TS+PTTS+ R FP+SVL  E ++D ++ + I  +K  +         
Sbjct: 28   SVTMLHELAAPAVTSVPTTSITRHFPASVLLQEQRDDIRSLLHIREDKPFEATLNRTQMD 87

Query: 1657 VGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXX 1478
                L +E++  + D+YLK FER+LLY PG+WYL  + +SGE   L              
Sbjct: 88   NDASLIQEKKDCRSDQYLKDFERQLLYWPGLWYLLPSSQSGEKPVLPL------------ 135

Query: 1477 SGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQ-PPLLGL-D 1304
               + +  +       +  DVL+LAK+A++AS++A  LA +SN +  +F +  P L L +
Sbjct: 136  -SMQSMAPDADKVLQFKACDVLSLAKKALLASKQAVSLAAESNSIGHDFDEFTPCLELKN 194

Query: 1303 LNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNT 1124
            L+   +EI ++   ++                        E+SS    E + KI + ++ 
Sbjct: 195  LSPSEKEITVKSTRLLERQSKKRRAPKLNVLSH-------ELSSFRTTEKHHKINQVIDP 247

Query: 1123 DDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALG 944
            +DP  LFL G ETKQLLT KEE +LF+ +QEL+RLEEVKQRL+ QF  EPTL EWA A+G
Sbjct: 248  NDPLGLFLSGSETKQLLTAKEETELFIQVQELIRLEEVKQRLQSQFDREPTLVEWAEAVG 307

Query: 943  MSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKF 764
            M+C  LQ  L SG RSREKMIY+NFR+V+HVA+ Y+GKGLN+QDLLQEGS+GL+KSLEKF
Sbjct: 308  MNCGTLQLHLHSGNRSREKMIYSNFRMVVHVAKNYQGKGLNLQDLLQEGSKGLIKSLEKF 367

Query: 763  KPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTN 584
            KP+AGCRF TYAYWWIRQSIRKAIFQNSRT+RLPENV+  L++ +  + L I+EGH PTN
Sbjct: 368  KPQAGCRFSTYAYWWIRQSIRKAIFQNSRTIRLPENVYNALRQVKSAKELFIKEGHQPTN 427

Query: 583  KELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMM 404
            +ELA RVGI VEKLE LL++TR P S+Q   W DQD T QEITAD EV  P+L + K +M
Sbjct: 428  EELAKRVGISVEKLESLLASTRMPLSMQRPVWSDQDTTFQEITADTEVATPELCVEKNLM 487

Query: 403  RQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKG 224
            R+HV NLL VL  +ER+II+ RYGI+D E KSL++IG ++G++KERVRQLE+RA DKLK 
Sbjct: 488  RRHVRNLLSVLPPKERRIIRLRYGIEDGEQKSLAQIGTVFGLSKERVRQLENRALDKLKK 547

Query: 223  CLSSHGLEAYINLL 182
            CLSSHGLEAY NLL
Sbjct: 548  CLSSHGLEAYTNLL 561


>emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score =  508 bits (1309), Expect = e-171
 Identities = 272/559 (48%), Positives = 371/559 (66%), Gaps = 8/559 (1%)
 Frame = -3

Query: 1831 KHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV---- 1670
            ++  +++LMLHDQ +  + S+PTT +AR+FP+SVL  E +++Y+   + +  E+      
Sbjct: 21   RNSSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATL 79

Query: 1669 -KHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXX 1493
             K     +   +E      ++Y+  FER+LL QPG+WY   + ++GE             
Sbjct: 80   EKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIM---- 135

Query: 1492 XXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLL 1313
                    K I  +   S  V+P DVLALAK+A+ AS++A  L E + +L  +    P  
Sbjct: 136  --------KSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSP 187

Query: 1312 GLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKG 1133
             L     +  + LE++T+                       V E   +  AE+  KI +G
Sbjct: 188  SLGAIS-SPNLPLEEKTV----RSTRLLERRSKKRRNPKVAVHENHGSRRAEVQRKINEG 242

Query: 1132 LNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAG 953
             +  DP RLFLWGPET++LLT KEE +L + IQELMRLEEVK+RL+     EPT+ EWA 
Sbjct: 243  YDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAE 302

Query: 952  ALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSL 773
            A+G+SCQVLQS L SG RSR+K+IYAN R+V+H+A+QY+G+GLN+QDLLQEGS GLM S+
Sbjct: 303  AVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSV 362

Query: 772  EKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHF 593
            EKFKP AGCRF +YAYWWIRQ++RKAIFQ+SRT+RLPEN++ LL K ++ +RL IQEGH 
Sbjct: 363  EKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHH 422

Query: 592  -PTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIA 416
             PT +E+A RVGI +EKL+RLL +TR P S+Q+  W DQD T QE+TAD  +EIPD+ +A
Sbjct: 423  DPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVA 482

Query: 415  KQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFD 236
            KQ+MRQHV NLL VL  +ER+II+ R+GI D  P++LSEIG ++G +KERVRQLE RA  
Sbjct: 483  KQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALH 542

Query: 235  KLKGCLSSHGLEAYINLLI 179
            KLK CLSSHGLE+Y +LL+
Sbjct: 543  KLKQCLSSHGLESYTDLLV 561


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Vitis vinifera]
          Length = 567

 Score =  508 bits (1309), Expect = e-170
 Identities = 272/559 (48%), Positives = 371/559 (66%), Gaps = 8/559 (1%)
 Frame = -3

Query: 1831 KHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV---- 1670
            ++  +++LMLHDQ +  + S+PTT +AR+FP+SVL  E +++Y+   + +  E+      
Sbjct: 27   RNSSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATL 85

Query: 1669 -KHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXX 1493
             K     +   +E      ++Y+  FER+LL QPG+WY   + ++GE             
Sbjct: 86   EKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIM---- 141

Query: 1492 XXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLL 1313
                    K I  +   S  V+P DVLALAK+A+ AS++A  L E + +L  +    P  
Sbjct: 142  --------KSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSP 193

Query: 1312 GLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKG 1133
             L     +  + LE++T+                       V E   +  AE+  KI +G
Sbjct: 194  SLGAIS-SPNLPLEEKTV----RSTRLLERRSKKRRNPKVAVHENHGSRRAEVQRKINEG 248

Query: 1132 LNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAG 953
             +  DP RLFLWGPET++LLT KEE +L + IQELMRLEEVK+RL+     EPT+ EWA 
Sbjct: 249  YDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAE 308

Query: 952  ALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSL 773
            A+G+SCQVLQS L SG RSR+K+IYAN R+V+H+A+QY+G+GLN+QDLLQEGS GLM S+
Sbjct: 309  AVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSV 368

Query: 772  EKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHF 593
            EKFKP AGCRF +YAYWWIRQ++RKAIFQ+SRT+RLPEN++ LL K ++ +RL IQEGH 
Sbjct: 369  EKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHH 428

Query: 592  -PTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIA 416
             PT +E+A RVGI +EKL+RLL +TR P S+Q+  W DQD T QE+TAD  +EIPD+ +A
Sbjct: 429  DPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVA 488

Query: 415  KQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFD 236
            KQ+MRQHV NLL VL  +ER+II+ R+GI D  P++LSEIG ++G +KERVRQLE RA  
Sbjct: 489  KQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALH 548

Query: 235  KLKGCLSSHGLEAYINLLI 179
            KLK CLSSHGLE+Y +LL+
Sbjct: 549  KLKQCLSSHGLESYTDLLV 567


>ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Vitis vinifera]
          Length = 566

 Score =  506 bits (1304), Expect = e-170
 Identities = 272/560 (48%), Positives = 371/560 (66%), Gaps = 9/560 (1%)
 Frame = -3

Query: 1831 KHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKT--RIINGEKVV---- 1670
            ++  +++LMLHDQ +  + S+PTT +AR+FP+SVL  E +++Y+   + +  E+      
Sbjct: 27   RNSSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATL 85

Query: 1669 -KHDGVGLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXX 1493
             K     +   +E      ++Y+  FER+LL QPG+WY   + ++GE             
Sbjct: 86   EKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIM---- 141

Query: 1492 XXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLL 1313
                    K I  +   S  V+P DVLALAK+A+ AS++A  L E + +L  +    P  
Sbjct: 142  --------KSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPS- 192

Query: 1312 GLDLNGFTQ-EIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEK 1136
               L   +   + LE++T+                       V E   +  AE+  KI +
Sbjct: 193  --SLGAISSPNLPLEEKTV----RSTRLLERRSKKRRNPKVAVHENHGSRRAEVQRKINE 246

Query: 1135 GLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWA 956
            G +  DP RLFLWGPET++LLT KEE +L + IQELMRLEEVK+RL+     EPT+ EWA
Sbjct: 247  GYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWA 306

Query: 955  GALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKS 776
             A+G+SCQVLQS L SG RSR+K+IYAN R+V+H+A+QY+G+GLN+QDLLQEGS GLM S
Sbjct: 307  EAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNS 366

Query: 775  LEKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGH 596
            +EKFKP AGCRF +YAYWWIRQ++RKAIFQ+SRT+RLPEN++ LL K ++ +RL IQEGH
Sbjct: 367  VEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGH 426

Query: 595  F-PTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMI 419
              PT +E+A RVGI +EKL+RLL +TR P S+Q+  W DQD T QE+TAD  +EIPD+ +
Sbjct: 427  HDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSV 486

Query: 418  AKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAF 239
            AKQ+MRQHV NLL VL  +ER+II+ R+GI D  P++LSEIG ++G +KERVRQLE RA 
Sbjct: 487  AKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRAL 546

Query: 238  DKLKGCLSSHGLEAYINLLI 179
             KLK CLSSHGLE+Y +LL+
Sbjct: 547  HKLKQCLSSHGLESYTDLLV 566


>ref|XP_020592220.1| RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Phalaenopsis equestris]
          Length = 540

 Score =  496 bits (1278), Expect = e-166
 Identities = 273/554 (49%), Positives = 351/554 (63%), Gaps = 7/554 (1%)
 Frame = -3

Query: 1819 ATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGVGLPLC 1640
            A ++MLH Q SR I S PT S  R FP+ +L     N Y       EK V    + L   
Sbjct: 6    APVVMLHGQTSRAIISAPTKSAVRHFPTFILTQVQHNGYDNSYGILEKKVTQAMLDLQSM 65

Query: 1639 E-------EREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXX 1481
            E       ERE+  FD Y+K+ E  LL  PG+WY F    + E                 
Sbjct: 66   EDSSLSLEERERNHFDLYMKHLECCLLCHPGLWYSFLTTYNLE----------------Y 109

Query: 1480 XSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDL 1301
                 + ++ Q  +S+  P DVL LAKRA+MA + AALLA+KSNI   E     L+  + 
Sbjct: 110  PVKRTREVINQNITSTTSPEDVLDLAKRALMACQDAALLADKSNIFLHELVDKTLVPRE- 168

Query: 1300 NGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTD 1121
                 E ++  +  +                        E S+A   +   +IEK  +  
Sbjct: 169  --SVAESMVGLKEAVRSKKFLERKSKKRKELKKSNSSAIETSAAMGTDKVKRIEKTFDNK 226

Query: 1120 DPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGM 941
            DP RLFLWGPETK+LLT+ EEKDL   IQ+LM ++ +K++L MQFG EPTL EWA ++GM
Sbjct: 227  DPLRLFLWGPETKKLLTIAEEKDLIARIQDLMGVDAIKKKLHMQFGREPTLMEWAESVGM 286

Query: 940  SCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFK 761
            S   LQSC+ SG  SR K++YANFRLVIH+A+QYEGKGL+ QDLLQ GS GLMKSLEKFK
Sbjct: 287  SFHDLQSCISSGINSRNKVLYANFRLVIHIAKQYEGKGLDFQDLLQVGSMGLMKSLEKFK 346

Query: 760  PKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNK 581
            P+ GCRF TYAYWWIRQSIRKAIFQ+SRT+RLPENVF  LK+ +D +R+ +QEG  PT++
Sbjct: 347  PQIGCRFSTYAYWWIRQSIRKAIFQHSRTIRLPENVFAELKRIKDAKRIFLQEGQTPTSE 406

Query: 580  ELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMR 401
            ELA R G+ V KLE LL  +RNP SIQ   W DQ++T+QEITADPE+E P +++ KQMMR
Sbjct: 407  ELAKRAGMHVGKLENLLKMSRNPISIQAHTWTDQEITLQEITADPEIETPKIIVEKQMMR 466

Query: 400  QHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGC 221
            QHV +LLGVL+ RER++I+ R+GI  SEPKSL +IG M+GI+KERVRQLE +A +K++ C
Sbjct: 467  QHVQSLLGVLSPRERKLIRLRFGIQYSEPKSLQQIGDMFGISKERVRQLECQALNKMRAC 526

Query: 220  LSSHGLEAYINLLI 179
             +S G  AY  LL+
Sbjct: 527  CTSLGFRAYAELLM 540


>ref|XP_020592221.1| RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Phalaenopsis equestris]
          Length = 534

 Score =  495 bits (1275), Expect = e-166
 Identities = 272/552 (49%), Positives = 350/552 (63%), Gaps = 7/552 (1%)
 Frame = -3

Query: 1813 LLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGVGLPLCE- 1637
            ++MLH Q SR I S PT S  R FP+ +L     N Y       EK V    + L   E 
Sbjct: 2    VVMLHGQTSRAIISAPTKSAVRHFPTFILTQVQHNGYDNSYGILEKKVTQAMLDLQSMED 61

Query: 1636 ------EREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXS 1475
                  ERE+  FD Y+K+ E  LL  PG+WY F    + E                   
Sbjct: 62   SSLSLEERERNHFDLYMKHLECCLLCHPGLWYSFLTTYNLE----------------YPV 105

Query: 1474 GSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNG 1295
               + ++ Q  +S+  P DVL LAKRA+MA + AALLA+KSNI   E     L+  +   
Sbjct: 106  KRTREVINQNITSTTSPEDVLDLAKRALMACQDAALLADKSNIFLHELVDKTLVPRE--- 162

Query: 1294 FTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDP 1115
               E ++  +  +                        E S+A   +   +IEK  +  DP
Sbjct: 163  SVAESMVGLKEAVRSKKFLERKSKKRKELKKSNSSAIETSAAMGTDKVKRIEKTFDNKDP 222

Query: 1114 FRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSC 935
             RLFLWGPETK+LLT+ EEKDL   IQ+LM ++ +K++L MQFG EPTL EWA ++GMS 
Sbjct: 223  LRLFLWGPETKKLLTIAEEKDLIARIQDLMGVDAIKKKLHMQFGREPTLMEWAESVGMSF 282

Query: 934  QVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPK 755
              LQSC+ SG  SR K++YANFRLVIH+A+QYEGKGL+ QDLLQ GS GLMKSLEKFKP+
Sbjct: 283  HDLQSCISSGINSRNKVLYANFRLVIHIAKQYEGKGLDFQDLLQVGSMGLMKSLEKFKPQ 342

Query: 754  AGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKEL 575
             GCRF TYAYWWIRQSIRKAIFQ+SRT+RLPENVF  LK+ +D +R+ +QEG  PT++EL
Sbjct: 343  IGCRFSTYAYWWIRQSIRKAIFQHSRTIRLPENVFAELKRIKDAKRIFLQEGQTPTSEEL 402

Query: 574  AHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQH 395
            A R G+ V KLE LL  +RNP SIQ   W DQ++T+QEITADPE+E P +++ KQMMRQH
Sbjct: 403  AKRAGMHVGKLENLLKMSRNPISIQAHTWTDQEITLQEITADPEIETPKIIVEKQMMRQH 462

Query: 394  VHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLS 215
            V +LLGVL+ RER++I+ R+GI  SEPKSL +IG M+GI+KERVRQLE +A +K++ C +
Sbjct: 463  VQSLLGVLSPRERKLIRLRFGIQYSEPKSLQQIGDMFGISKERVRQLECQALNKMRACCT 522

Query: 214  SHGLEAYINLLI 179
            S G  AY  LL+
Sbjct: 523  SLGFRAYAELLM 534


>ref|XP_020592218.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Phalaenopsis equestris]
          Length = 558

 Score =  496 bits (1277), Expect = e-166
 Identities = 274/564 (48%), Positives = 354/564 (62%), Gaps = 7/564 (1%)
 Frame = -3

Query: 1849 RMAMQPKHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVV 1670
            R+    +H    ++MLH Q SR I S PT S  R FP+ +L     N Y       EK V
Sbjct: 14   RLKSSNEHGVNGVVMLHGQTSRAIISAPTKSAVRHFPTFILTQVQHNGYDNSYGILEKKV 73

Query: 1669 KHDGVGLPLCE-------EREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXX 1511
                + L   E       ERE+  FD Y+K+ E  LL  PG+WY F    + E       
Sbjct: 74   TQAMLDLQSMEDSSLSLEERERNHFDLYMKHLECCLLCHPGLWYSFLTTYNLE------- 126

Query: 1510 XXXXXXXXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEF 1331
                           + ++ Q  +S+  P DVL LAKRA+MA + AALLA+KSNI   E 
Sbjct: 127  ---------YPVKRTREVINQNITSTTSPEDVLDLAKRALMACQDAALLADKSNIFLHEL 177

Query: 1330 GQPPLLGLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELN 1151
                L+  +      E ++  +  +                        E S+A   +  
Sbjct: 178  VDKTLVPRE---SVAESMVGLKEAVRSKKFLERKSKKRKELKKSNSSAIETSAAMGTDKV 234

Query: 1150 TKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPT 971
             +IEK  +  DP RLFLWGPETK+LLT+ EEKDL   IQ+LM ++ +K++L MQFG EPT
Sbjct: 235  KRIEKTFDNKDPLRLFLWGPETKKLLTIAEEKDLIARIQDLMGVDAIKKKLHMQFGREPT 294

Query: 970  LAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSR 791
            L EWA ++GMS   LQSC+ SG  SR K++YANFRLVIH+A+QYEGKGL+ QDLLQ GS 
Sbjct: 295  LMEWAESVGMSFHDLQSCISSGINSRNKVLYANFRLVIHIAKQYEGKGLDFQDLLQVGSM 354

Query: 790  GLMKSLEKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLC 611
            GLMKSLEKFKP+ GCRF TYAYWWIRQSIRKAIFQ+SRT+RLPENVF  LK+ +D +R+ 
Sbjct: 355  GLMKSLEKFKPQIGCRFSTYAYWWIRQSIRKAIFQHSRTIRLPENVFAELKRIKDAKRIF 414

Query: 610  IQEGHFPTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIP 431
            +QEG  PT++ELA R G+ V KLE LL  +RNP SIQ   W DQ++T+QEITADPE+E P
Sbjct: 415  LQEGQTPTSEELAKRAGMHVGKLENLLKMSRNPISIQAHTWTDQEITLQEITADPEIETP 474

Query: 430  DLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLE 251
             +++ KQMMRQHV +LLGVL+ RER++I+ R+GI  SEPKSL +IG M+GI+KERVRQLE
Sbjct: 475  KIIVEKQMMRQHVQSLLGVLSPRERKLIRLRFGIQYSEPKSLQQIGDMFGISKERVRQLE 534

Query: 250  SRAFDKLKGCLSSHGLEAYINLLI 179
             +A +K++ C +S G  AY  LL+
Sbjct: 535  CQALNKMRACCTSLGFRAYAELLM 558


>ref|XP_020592217.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Phalaenopsis equestris]
          Length = 564

 Score =  496 bits (1277), Expect = e-166
 Identities = 274/564 (48%), Positives = 354/564 (62%), Gaps = 7/564 (1%)
 Frame = -3

Query: 1849 RMAMQPKHCRATLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVV 1670
            R+    +H    ++MLH Q SR I S PT S  R FP+ +L     N Y       EK V
Sbjct: 20   RLKSSNEHGVNGVVMLHGQTSRAIISAPTKSAVRHFPTFILTQVQHNGYDNSYGILEKKV 79

Query: 1669 KHDGVGLPLCE-------EREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXX 1511
                + L   E       ERE+  FD Y+K+ E  LL  PG+WY F    + E       
Sbjct: 80   TQAMLDLQSMEDSSLSLEERERNHFDLYMKHLECCLLCHPGLWYSFLTTYNLE------- 132

Query: 1510 XXXXXXXXXXXSGSKQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEF 1331
                           + ++ Q  +S+  P DVL LAKRA+MA + AALLA+KSNI   E 
Sbjct: 133  ---------YPVKRTREVINQNITSTTSPEDVLDLAKRALMACQDAALLADKSNIFLHEL 183

Query: 1330 GQPPLLGLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELN 1151
                L+  +      E ++  +  +                        E S+A   +  
Sbjct: 184  VDKTLVPRE---SVAESMVGLKEAVRSKKFLERKSKKRKELKKSNSSAIETSAAMGTDKV 240

Query: 1150 TKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPT 971
             +IEK  +  DP RLFLWGPETK+LLT+ EEKDL   IQ+LM ++ +K++L MQFG EPT
Sbjct: 241  KRIEKTFDNKDPLRLFLWGPETKKLLTIAEEKDLIARIQDLMGVDAIKKKLHMQFGREPT 300

Query: 970  LAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSR 791
            L EWA ++GMS   LQSC+ SG  SR K++YANFRLVIH+A+QYEGKGL+ QDLLQ GS 
Sbjct: 301  LMEWAESVGMSFHDLQSCISSGINSRNKVLYANFRLVIHIAKQYEGKGLDFQDLLQVGSM 360

Query: 790  GLMKSLEKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLC 611
            GLMKSLEKFKP+ GCRF TYAYWWIRQSIRKAIFQ+SRT+RLPENVF  LK+ +D +R+ 
Sbjct: 361  GLMKSLEKFKPQIGCRFSTYAYWWIRQSIRKAIFQHSRTIRLPENVFAELKRIKDAKRIF 420

Query: 610  IQEGHFPTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIP 431
            +QEG  PT++ELA R G+ V KLE LL  +RNP SIQ   W DQ++T+QEITADPE+E P
Sbjct: 421  LQEGQTPTSEELAKRAGMHVGKLENLLKMSRNPISIQAHTWTDQEITLQEITADPEIETP 480

Query: 430  DLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLE 251
             +++ KQMMRQHV +LLGVL+ RER++I+ R+GI  SEPKSL +IG M+GI+KERVRQLE
Sbjct: 481  KIIVEKQMMRQHVQSLLGVLSPRERKLIRLRFGIQYSEPKSLQQIGDMFGISKERVRQLE 540

Query: 250  SRAFDKLKGCLSSHGLEAYINLLI 179
             +A +K++ C +S G  AY  LL+
Sbjct: 541  CQALNKMRACCTSLGFRAYAELLM 564


>ref|XP_020592222.1| RNA polymerase sigma factor sigF, chloroplastic isoform X5
            [Phalaenopsis equestris]
 ref|XP_020592223.1| RNA polymerase sigma factor sigF, chloroplastic isoform X5
            [Phalaenopsis equestris]
          Length = 531

 Score =  494 bits (1273), Expect = e-166
 Identities = 272/550 (49%), Positives = 348/550 (63%), Gaps = 7/550 (1%)
 Frame = -3

Query: 1807 MLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGVGLPLCE--- 1637
            MLH Q SR I S PT S  R FP+ +L     N Y       EK V    + L   E   
Sbjct: 1    MLHGQTSRAIISAPTKSAVRHFPTFILTQVQHNGYDNSYGILEKKVTQAMLDLQSMEDSS 60

Query: 1636 ----EREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXXXXXXXSGS 1469
                ERE+  FD Y+K+ E  LL  PG+WY F    + E                     
Sbjct: 61   LSLEERERNHFDLYMKHLECCLLCHPGLWYSFLTTYNLE----------------YPVKR 104

Query: 1468 KQILVEQTTSSSVQPGDVLALAKRAVMASRKAALLAEKSNILEFEFGQPPLLGLDLNGFT 1289
             + ++ Q  +S+  P DVL LAKRA+MA + AALLA+KSNI   E     L+  +     
Sbjct: 105  TREVINQNITSTTSPEDVLDLAKRALMACQDAALLADKSNIFLHELVDKTLVPRE---SV 161

Query: 1288 QEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVSEVSSATIAELNTKIEKGLNTDDPFR 1109
             E ++  +  +                        E S+A   +   +IEK  +  DP R
Sbjct: 162  AESMVGLKEAVRSKKFLERKSKKRKELKKSNSSAIETSAAMGTDKVKRIEKTFDNKDPLR 221

Query: 1108 LFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPTLAEWAGALGMSCQV 929
            LFLWGPETK+LLT+ EEKDL   IQ+LM ++ +K++L MQFG EPTL EWA ++GMS   
Sbjct: 222  LFLWGPETKKLLTIAEEKDLIARIQDLMGVDAIKKKLHMQFGREPTLMEWAESVGMSFHD 281

Query: 928  LQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSRGLMKSLEKFKPKAG 749
            LQSC+ SG  SR K++YANFRLVIH+A+QYEGKGL+ QDLLQ GS GLMKSLEKFKP+ G
Sbjct: 282  LQSCISSGINSRNKVLYANFRLVIHIAKQYEGKGLDFQDLLQVGSMGLMKSLEKFKPQIG 341

Query: 748  CRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLCIQEGHFPTNKELAH 569
            CRF TYAYWWIRQSIRKAIFQ+SRT+RLPENVF  LK+ +D +R+ +QEG  PT++ELA 
Sbjct: 342  CRFSTYAYWWIRQSIRKAIFQHSRTIRLPENVFAELKRIKDAKRIFLQEGQTPTSEELAK 401

Query: 568  RVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEIPDLMIAKQMMRQHVH 389
            R G+ V KLE LL  +RNP SIQ   W DQ++T+QEITADPE+E P +++ KQMMRQHV 
Sbjct: 402  RAGMHVGKLENLLKMSRNPISIQAHTWTDQEITLQEITADPEIETPKIIVEKQMMRQHVQ 461

Query: 388  NLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQLESRAFDKLKGCLSSH 209
            +LLGVL+ RER++I+ R+GI  SEPKSL +IG M+GI+KERVRQLE +A +K++ C +S 
Sbjct: 462  SLLGVLSPRERKLIRLRFGIQYSEPKSLQQIGDMFGISKERVRQLECQALNKMRACCTSL 521

Query: 208  GLEAYINLLI 179
            G  AY  LL+
Sbjct: 522  GFRAYAELLM 531


>ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus
            avium]
          Length = 573

 Score =  495 bits (1275), Expect = e-165
 Identities = 277/565 (49%), Positives = 373/565 (66%), Gaps = 19/565 (3%)
 Frame = -3

Query: 1816 TLLMLHDQASRPITSLPTTSLARQFPSSVLPHEPQNDYKTRIINGEKVVKHDGV------ 1655
            ++LMLH+QA   +TS+P TS+AR FP+SVL  E ++++K  +     V+K D        
Sbjct: 32   SVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLL----HVLKEDKTSEATLD 87

Query: 1654 ------GLPLCEEREKQKFDEYLKYFERRLLYQPGVWYLFTAPRSGENKYLXXXXXXXXX 1493
                  G  + E+ +   F   +   + +LL  P +  +F++ ++G              
Sbjct: 88   RMQIETGASVHEDLDIDDFYPLVNGSKPQLL-NPDILDVFSSLQTGAKP----------- 135

Query: 1492 XXXXXSGSKQILVEQTTSSS-----VQPGDVLALAKRAVMASRKAALLAEKSNILEFEFG 1328
                   S  + +E  T++S     V+P +V+ALAK+A+ ASR+AA LAE S  +  +F 
Sbjct: 136  -------STPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFD 188

Query: 1327 QPPLLGLDLNGFTQEIVLEDETMIXXXXXXXXXXXXXXXXXXXXXVVS-EVSSATIAELN 1151
            +   LGL        IV E+ T+                      V+  E +S T +++ 
Sbjct: 189  ESLSLGLGYTSLANWIVEEETTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTSSDVR 248

Query: 1150 TKIEKGLNTDDPFRLFLWGPETKQLLTVKEEKDLFLHIQELMRLEEVKQRLKMQFGHEPT 971
             KI +G N +DP RLFLWGPET+QLLT KEE +L   +Q+L +LEEVK RL+ QFG EPT
Sbjct: 249  KKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKTRLQTQFGREPT 308

Query: 970  LAEWAGALGMSCQVLQSCLRSGKRSREKMIYANFRLVIHVARQYEGKGLNIQDLLQEGSR 791
            L EWA A+G+SCQ+L+S LRSG  SREK+IYAN R+V+H+A+QY+G+GL +QDL+QEGS 
Sbjct: 309  LIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSM 368

Query: 790  GLMKSLEKFKPKAGCRFPTYAYWWIRQSIRKAIFQNSRTVRLPENVFGLLKKTRDERRLC 611
            GLMKS+EKFKP+AGCRF TYAYWWIRQ++RKAIFQ+SRT+RLPENV+ LL K  + ++ C
Sbjct: 369  GLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSC 428

Query: 610  IQEG-HFPTNKELAHRVGIRVEKLERLLSNTRNPRSIQERAWIDQDVTIQEITADPEVEI 434
            IQEG H P+ +ELA RVGI VEKLE+LL  TR P S+Q+  W DQD T QE+TAD  VEI
Sbjct: 429  IQEGNHNPSKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEI 488

Query: 433  PDLMIAKQMMRQHVHNLLGVLNRRERQIIKFRYGIDDSEPKSLSEIGAMYGITKERVRQL 254
            PD+ +AKQ+MRQHV +LL +LN RERQII+ RYGI+D + +SLSEIG M+G++KERVRQL
Sbjct: 489  PDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQL 548

Query: 253  ESRAFDKLKGCLSSHGLEAYINLLI 179
            ESRAF KL+  L S GL AY  LL+
Sbjct: 549  ESRAFLKLRQSLGSQGLGAYGPLLV 573