BLASTX nr result
ID: Ophiopogon26_contig00055694
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00055694
(422 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo... 122 1e-30
ref|XP_016457574.1| PREDICTED: uncharacterized mitochondrial pro... 114 6e-29
gb|PKA56982.1| Retrovirus-related Pol polyprotein from transposo... 108 2e-27
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense] 114 8e-27
ref|XP_020250324.1| uncharacterized protein LOC109827718 [Aspara... 104 3e-25
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 107 4e-24
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 107 4e-24
ref|XP_019057165.1| PREDICTED: uncharacterized protein LOC109116... 101 6e-24
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 104 2e-23
dbj|GAV69956.1| gag_pre-integrs domain-containing protein [Cepha... 99 3e-23
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 102 2e-22
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 101 3e-22
ref|XP_014631008.1| PREDICTED: uncharacterized mitochondrial pro... 95 1e-21
gb|KYP40581.1| Retrovirus-related Pol polyprotein from transposo... 96 1e-21
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo... 100 1e-21
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 99 2e-21
ref|XP_020270598.1| LOW QUALITY PROTEIN: AP-1 complex subunit mu... 98 5e-21
gb|KYP38714.1| Retrovirus-related Pol polyprotein from transposo... 94 7e-21
gb|KYP38720.1| Retrovirus-related Pol polyprotein from transposo... 94 9e-21
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 97 9e-21
>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 365
Score = 122 bits (306), Expect = 1e-30
Identities = 66/143 (46%), Positives = 91/143 (63%), Gaps = 5/143 (3%)
Frame = -3
Query: 414 VGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEVT-VTLGSITI 247
VGIG ++++M DG RT ++V H+PD+RK +SLG A GC F + V G+ +
Sbjct: 208 VGIGTIKIKMFDGVIRTLTEVRHVPDLRKGLISLGTLDASGCTFIGSDGIIKVKKGAPVV 267
Query: 246 LKREHITNLYMMIESAIVGDVSATTE-NGDITRFWHMRLGHMSERGLQV*HNKCVLPIIN 70
+K E I +LY +I I GD++ T+ + D T WH RLGHMSERGL HN+ +L I
Sbjct: 268 MKGEKIESLYRLIGKTITGDIAVTSSTDDDDTMLWHARLGHMSERGLLELHNRKLLKGIK 327
Query: 69 HCKLDLCKFCLMGKQHRVIFPTS 1
CK+D C+FC++GKQ RV F TS
Sbjct: 328 SCKIDFCEFCVLGKQCRVKFVTS 350
>ref|XP_016457574.1| PREDICTED: uncharacterized mitochondrial protein AtMg00300-like
[Nicotiana tabacum]
Length = 202
Score = 114 bits (284), Expect = 6e-29
Identities = 63/145 (43%), Positives = 90/145 (62%), Gaps = 7/145 (4%)
Frame = -3
Query: 417 IVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGA---QGCKFQVKL-EVTVTLGSIT 250
IVGIG++R+R HDG RT ++V H+PD++KN +SL QG ++ + + VT GS+
Sbjct: 28 IVGIGSVRVRCHDGVVRTITQVRHVPDLKKNLISLSTLDEQGYRYMSEAGTIKVTKGSLV 87
Query: 249 ILKREHITNLYMMIESAIVGDVSATT---ENGDITRFWHMRLGHMSERGLQV*HNKCVLP 79
+LK + LY + S IVG +A+T N D R WHMRLGHMS RGL++ N+ +L
Sbjct: 88 MLKGKLENGLYTLAGSTIVGSANASTVQLSNDDKARLWHMRLGHMSARGLEMLSNRTLLE 147
Query: 78 IINHCKLDLCKFCLMGKQHRVIFPT 4
LD C+ C++GKQ +V F T
Sbjct: 148 GEKINTLDFCEHCVLGKQKKVSFST 172
>gb|PKA56982.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 143
Score = 108 bits (269), Expect = 2e-27
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 5/134 (3%)
Frame = -3
Query: 387 MHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEVT-VTLGSITILKREHITNL 220
M DG RT ++V H+PD+RK +SLG A GC F + V G++ ++K E I +L
Sbjct: 1 MFDGVIRTLTEVRHVPDLRKGLISLGTLDASGCTFTGSDGIIKVKKGTLIVMKGEKIGSL 60
Query: 219 YMMIESAIVGDVSATTENGDI-TRFWHMRLGHMSERGLQV*HNKCVLPIINHCKLDLCKF 43
Y +I I GDV+ T+ + D T WH RLGHMSERGL HN+ +L I C +D C+
Sbjct: 61 YRLIGKTITGDVAVTSSSDDDDTILWHARLGHMSERGLLELHNRKLLKGIKSCTIDFCES 120
Query: 42 CLMGKQHRVIFPTS 1
C++GKQ RV F TS
Sbjct: 121 CVLGKQCRVKFVTS 134
>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
Length = 876
Score = 114 bits (286), Expect = 8e-27
Identities = 55/143 (38%), Positives = 93/143 (65%), Gaps = 7/143 (4%)
Frame = -3
Query: 417 IVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGA---QGCKFQVKLE---VTVTLGS 256
I GIG +++ M DG RT + V +IP++RKN +SLG G ++ + + V+ G+
Sbjct: 247 ITGIGQIKIAMDDGGVRTLTNVRYIPELRKNLISLGTLQENGYSYRSDRDRDILKVSKGA 306
Query: 255 ITILKREHIT-NLYMMIESAIVGDVSATTENGDITRFWHMRLGHMSERGLQV*HNKCVLP 79
+T+++ + N+Y ++ + +VGDV++ + D T+ WH+RLGH+SERG+ H + +L
Sbjct: 307 LTVMRVKRTAGNIYKLLGNTVVGDVASVESDNDATKLWHLRLGHLSERGMMELHKRSLLK 366
Query: 78 IINHCKLDLCKFCLMGKQHRVIF 10
+ CK+DLCK+C++GKQ RV F
Sbjct: 367 GVCSCKMDLCKYCVLGKQCRVRF 389
>ref|XP_020250324.1| uncharacterized protein LOC109827718 [Asparagus officinalis]
Length = 191
Score = 104 bits (259), Expect = 3e-25
Identities = 57/144 (39%), Positives = 87/144 (60%), Gaps = 5/144 (3%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGAQ---GCKFQVKL-EVTVTLGSI 253
R VGIG +R+R HD RT S + HIPD++KN +SL + GC + + + VT GS+
Sbjct: 28 RTVGIGTVRIRYHDEIVRTLSDMRHIPDLKKNLISLSSLDSIGCSYTGEGGALRVTKGSL 87
Query: 252 TILKREHITNLYMMIESAIVGDVSATTE-NGDITRFWHMRLGHMSERGLQV*HNKCVLPI 76
++K + +LY++ S + G S ++ + D T+ WHMRLGHMSE+G+ + + +L
Sbjct: 88 VVMKGSKVNSLYVLQGSTVTGSASVYSDVDRDTTQLWHMRLGHMSEKGVTILSKRGLLCG 147
Query: 75 INHCKLDLCKFCLMGKQHRVIFPT 4
+ LD C+ C+ GKQ RV F T
Sbjct: 148 DHTSSLDFCEHCVFGKQTRVSFST 171
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 107 bits (266), Expect = 4e-24
Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEV-TVTLGSI 253
+I GIG ++++ HDG +T S V IPD+++N +SLG + GCK+ + V V+ G+I
Sbjct: 324 KIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAI 383
Query: 252 TILKREHITNLYMMIESAIVGD--VSATTENGDITRFWHMRLGHMSERGLQV*HNKCVLP 79
+LK I +LY++ S + G VS++ + D T+ WHMRLGHMSE+G+ + + +L
Sbjct: 384 VLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLG 443
Query: 78 IINHCKLDLCKFCLMGKQHRVIFPTS 1
KL+ C+ C+ GKQ RV F T+
Sbjct: 444 NQGIGKLEFCEHCVFGKQKRVSFSTA 469
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 107 bits (266), Expect = 4e-24
Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEV-TVTLGSI 253
+I GIG ++++ HDG +T S V IPD+++N +SLG + GCK+ + V V+ G+I
Sbjct: 28 KIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAI 87
Query: 252 TILKREHITNLYMMIESAIVGD--VSATTENGDITRFWHMRLGHMSERGLQV*HNKCVLP 79
+LK I +LY++ S + G VS++ + D T+ WHMRLGHMSE+G+ + + +L
Sbjct: 88 VLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLG 147
Query: 78 IINHCKLDLCKFCLMGKQHRVIFPTS 1
KL+ C+ C+ GKQ RV F T+
Sbjct: 148 NQGIGKLEFCEHCVFGKQKRVSFSTA 173
>ref|XP_019057165.1| PREDICTED: uncharacterized protein LOC109116374, partial [Tarenaya
hassleriana]
Length = 209
Score = 101 bits (251), Expect = 6e-24
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Frame = -3
Query: 411 GIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGAQGCK-FQVKLE---VTVTLGSITIL 244
GIG++R+R HDG R ++V ++P+++KN +SLG K + V + + V G++ +L
Sbjct: 39 GIGSIRLRCHDGTTRILTEVRYVPNLKKNLISLGTLESKGYTVTIRDGILKVVSGALVVL 98
Query: 243 KREHITNLYMMIESAIVGDVSATT---ENGDITRFWHMRLGHMSERGLQV*HNKCVLPII 73
K NLY S ++G V+ T ++ ++TR WHMRLGH E+ LQ + VL
Sbjct: 99 KGVRKNNLYYFKGSTVIGTVAVTAGEDKDSEVTRLWHMRLGHPGEKALQNLVKQGVLKGA 158
Query: 72 NHCKLDLCKFCLMGKQHRVIFPTS 1
CKL+ C+ C++GKQ +V F T+
Sbjct: 159 RLCKLEFCEHCVLGKQSKVKFGTA 182
>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 448
Score = 104 bits (259), Expect = 2e-23
Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 7/145 (4%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEV-TVTLGSI 253
+ VGIG +++RMHDG RT ++V H+PD++KN +S+G ++G K VK V + GS
Sbjct: 90 KTVGIGTIQLRMHDGVIRTLTEVRHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGST 149
Query: 252 TILKREHITNLYMM--IESAIVGDVSATTEN-GDITRFWHMRLGHMSERGLQV*HNKCVL 82
+++ NLYM+ S+I VS +N D+T WHMRLGHMSERG+ + + +L
Sbjct: 150 VVMRGFKKGNLYMLQGSTSSISESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLL 209
Query: 81 PIINHCKLDLCKFCLMGKQHRVIFP 7
+L C+ C+ GKQHR+ FP
Sbjct: 210 GNHTVKELRFCEHCVFGKQHRIKFP 234
>dbj|GAV69956.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
Length = 176
Score = 98.6 bits (244), Expect = 3e-23
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 8/137 (5%)
Frame = -3
Query: 387 MHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEVTVTL-GSITILKREHITNL 220
M DG RT + H+P ++KN +SLG + GCKF + + L G++ I+K + I L
Sbjct: 1 MFDGVIRTL-EAWHVPGLKKNLISLGVLDSHGCKFTGENGIIKVLRGALVIMKGKKIDGL 59
Query: 219 YMMIESAIVGDV----SATTENGDITRFWHMRLGHMSERGLQV*HNKCVLPIINHCKLDL 52
Y + +A++G S+ ++ D TRFWH+RLGHMSERGLQ+ K +L + KLD
Sbjct: 60 YQLQGNAVLGTATVASSSRDKDADTTRFWHIRLGHMSERGLQILSKKGLLAGVKSGKLDF 119
Query: 51 CKFCLMGKQHRVIFPTS 1
C+ C+ GKQ RV F T+
Sbjct: 120 CEHCVYGKQCRVKFSTA 136
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 102 bits (253), Expect = 2e-22
Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGAQGCKFQVKLE----VTVTLGSI 253
+ VGIG++++R HDG R V ++P ++KN +SLGA K V + TLG++
Sbjct: 261 KTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGAL 320
Query: 252 TILKREHITNLYMMIESAIVGDVSATT----ENGDITRFWHMRLGHMSERGLQV*HNKCV 85
+LK NLY S +VG V+A T ++ + + WHMRLGH E+ LQ+ + +
Sbjct: 321 VMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGL 380
Query: 84 LPIINHCKLDLCKFCLMGKQHRVIFPTS 1
L CKL+ C+ C++GKQ RV F T+
Sbjct: 381 LKGTKACKLEFCEHCVLGKQRRVKFGTA 408
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 101 bits (252), Expect = 3e-22
Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGAQGCKFQVKLE----VTVTLGSI 253
+ VGIG++++R HDG R V ++P ++KN +SLGA K V + T G++
Sbjct: 262 KTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGAL 321
Query: 252 TILKREHITNLYMMIESAIVGDVSATT----ENGDITRFWHMRLGHMSERGLQV*HNKCV 85
+LK NLY S +VG V+A T ++ + T+ WHMRLGH E+ LQ+ + +
Sbjct: 322 VMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGL 381
Query: 84 LPIINHCKLDLCKFCLMGKQHRVIFPTS 1
L CKL+ C+ C++GKQ RV F T+
Sbjct: 382 LKGTKACKLEFCEHCVLGKQRRVKFGTA 409
>ref|XP_014631008.1| PREDICTED: uncharacterized mitochondrial protein AtMg00300-like
[Glycine max]
Length = 180
Score = 94.7 bits (234), Expect = 1e-21
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 10/148 (6%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG-AQGCKFQVKLE---VTVTLGSI 253
+ +GIG ++++MHDG +T ++V H+P+++KN +S+G G F+ E + + GS
Sbjct: 8 KTIGIGTIKIKMHDGIIQTLTEVRHVPELKKNLISIGIVDGKGFKCSTENGVMKIQKGSA 67
Query: 252 TILKREHITNLYMMIESAIVGD---VSATTEN---GDITRFWHMRLGHMSERGLQV*HNK 91
++K NLY++ + + D V A+ N D+T+ WHMRLGHMSE+G+ + +
Sbjct: 68 MVMKGIKRGNLYILQGTTCIDDGLVVVASRSNKSIPDLTQLWHMRLGHMSEKGMMILQKQ 127
Query: 90 CVLPIINHCKLDLCKFCLMGKQHRVIFP 7
+ +L C+ C+ GKQHR+ FP
Sbjct: 128 QLFGNQKLDELKFCEHCVFGKQHRIKFP 155
>gb|KYP40581.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 218
Score = 95.5 bits (236), Expect = 1e-21
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 7/145 (4%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEV-TVTLGSI 253
+IVGIG +++RMHDG RT ++V H+PD++ N +S+G ++ K VK V + GS
Sbjct: 8 KIVGIGTIQLRMHDGVIRTLTEVRHVPDLKNNLISVGVLDSKSFKCNVKNGVMEIKRGST 67
Query: 252 TILKREHITNLYMM--IESAIVGDVSATTEN-GDITRFWHMRLGHMSERGLQV*HNKCVL 82
+++ NLYM+ S+I +S +N D+T WHMRLGHMSERG+ + + +L
Sbjct: 68 LVMRGFKKGNLYMLQGSTSSISESISVAEKNIPDLTYLWHMRLGHMSERGMMILSKQQLL 127
Query: 81 PIINHCKLDLCKFCLMGKQHRVIFP 7
+L C+ GK+HR+ FP
Sbjct: 128 GNHTVKELRFYDHCIFGKEHRIKFP 152
>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Capsicum baccatum]
Length = 1526
Score = 99.8 bits (247), Expect = 1e-21
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 6/131 (4%)
Frame = -3
Query: 384 HDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLEVT-VTLGSITILKREHITNLY 217
HDG RT + V H+PD+++N +SLG +QGC++ + V V+ G+ +LK +LY
Sbjct: 66 HDGVIRTLTSVRHVPDLKRNLISLGTLESQGCRYSAEGGVLKVSKGAFVLLKAIRSGSLY 125
Query: 216 MMIESAIVGDVSATTENGDITRFWHMRLGHMSERGLQV*HNKCVLPIINHC--KLDLCKF 43
++ S ++G + + N D T+ WH+RLGHMSE+G+Q+ K L NHC K+D +
Sbjct: 126 LLQGSTVIGSETIASSNKDNTKLWHLRLGHMSEKGIQILKKKGYLG--NHCTGKVDFYEH 183
Query: 42 CLMGKQHRVIF 10
C+ GKQ +V F
Sbjct: 184 CIFGKQRKVSF 194
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 99.4 bits (246), Expect = 2e-21
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 7/145 (4%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGAQGCK-FQVKLE---VTVTLGSI 253
+ +GIG ++++MHDG RT ++V H+PD++KN +S+G K F+ +E + ++ GS
Sbjct: 251 KTIGIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGST 310
Query: 252 TILKREHITNLYMMIESA--IVGDVS-ATTENGDITRFWHMRLGHMSERGLQV*HNKCVL 82
+++ NLYM+ S I VS A D+T WHMRLGHMSERG+ V + +L
Sbjct: 311 VVIRGIKKGNLYMLQGSTNLISESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLL 370
Query: 81 PIINHCKLDLCKFCLMGKQHRVIFP 7
+L C+ C++GK HR+ FP
Sbjct: 371 GDHTVKELKFCEHCVVGKHHRIKFP 395
>ref|XP_020270598.1| LOW QUALITY PROTEIN: AP-1 complex subunit mu-2-like [Asparagus
officinalis]
Length = 740
Score = 98.2 bits (243), Expect = 5e-21
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 14/151 (9%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKL-EVTVTLGSI 253
+++GIG ++++M+D TF V HIP ++KN +SLG A G + ++ + G +
Sbjct: 138 KVIGIGTVKVKMYDDIICTFGNVRHIPALKKNLISLGTLDASGLTYSSSGGKIKICKGLM 197
Query: 252 TILKREHI-TNLYMMIESAIVGDV---------SATTENGDITRFWHMRLGHMSERGLQV 103
I++ E + NLY ++ + G+V S T D T W++RLGHMSER ++
Sbjct: 198 VIMQGEKLPNNLYNLLRDTVSGEVVVSTTFKEDSMTNSGEDSTHLWYLRLGHMSERAMEE 257
Query: 102 *HNKCVLPIINHCKLDLCKFCLMGKQHRVIF 10
H + +L + CKLD CK+C++GKQ +V F
Sbjct: 258 LHKRKLLKNMETCKLDFCKYCVLGKQCKVSF 288
>gb|KYP38714.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 232
Score = 94.0 bits (232), Expect = 7e-21
Identities = 54/145 (37%), Positives = 90/145 (62%), Gaps = 7/145 (4%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLE-VTVTLGSI 253
+ +GI ++++MHDG RT ++V H+PD++KN +S+G +G K V+ E + ++ GSI
Sbjct: 28 KTIGIRTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGEAMEISKGSI 87
Query: 252 TILKREHITNLYMMIES--AIVGDVSATTEN-GDITRFWHMRLGHMSERGLQV*HNKCVL 82
+++ + NLYM+ S +I +S T ++ D+T W+M LGHMSERG+ V + +L
Sbjct: 88 VVIRGINKGNLYMLQGSTNSISESISVTDKHTPDLTHLWYMLLGHMSERGMMVLSKQQLL 147
Query: 81 PIINHCKLDLCKFCLMGKQHRVIFP 7
+L C+ C+ GK HR+ FP
Sbjct: 148 GDHIIKELKFCEHCVFGKYHRIKFP 172
>gb|KYP38720.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 242
Score = 94.0 bits (232), Expect = 9e-21
Identities = 54/145 (37%), Positives = 90/145 (62%), Gaps = 7/145 (4%)
Frame = -3
Query: 420 RIVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLG---AQGCKFQVKLE-VTVTLGSI 253
+ +GI ++++MHDG RT ++V H+PD++KN +S+G +G K V+ E + ++ GSI
Sbjct: 38 KTIGIRTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGEAMEISKGSI 97
Query: 252 TILKREHITNLYMMIES--AIVGDVSATTEN-GDITRFWHMRLGHMSERGLQV*HNKCVL 82
+++ + NLYM+ S +I +S T ++ D+T W+M LGHMSERG+ V + +L
Sbjct: 98 VVIRGINKGNLYMLQGSTNSISESISVTDKHTPDLTHLWYMLLGHMSERGMMVLSKQQLL 157
Query: 81 PIINHCKLDLCKFCLMGKQHRVIFP 7
+L C+ C+ GK HR+ FP
Sbjct: 158 GDHIIKELKFCEHCVFGKYHRIKFP 182
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 97.4 bits (241), Expect = 9e-21
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Frame = -3
Query: 417 IVGIGNLRMRMHDGEERTFSKV*HIPDMRKNFLSLGAQ---GCKFQVKLEVT-VTLGSIT 250
I G+G +R++MHDG R V H+ ++KN LS+G GCK + + V G++
Sbjct: 329 IAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLV 388
Query: 249 ILKREHIT-NLYMMIESAIV-GDVS-ATTENGDITRFWHMRLGHMSERGLQV*HNKCVLP 79
++K E IT NLYM++ + D S A + T WH RLGHMSERGL+V + +L
Sbjct: 389 VMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLH 448
Query: 78 IINHCKLDLCKFCLMGKQHRVIF 10
+ L C+ C+M KQHR+ F
Sbjct: 449 GLKTVNLPFCEHCVMSKQHRLKF 471