BLASTX nr result
ID: Ophiopogon26_contig00053971
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00053971
(666 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EDZ73223.1| YDR012Wp-like protein [Saccharomyces cerevisiae A... 281 3e-93
dbj|BAK00534.1| predicted protein [Hordeum vulgare subsp. vulgare] 286 6e-93
ref|NP_596510.1| 60S ribosomal protein L4 [Schizosaccharomyces p... 285 1e-92
gb|ACF81765.1| unknown [Zea mays] 285 1e-92
dbj|GAX99743.1| 60S ribosomal protein L4 [Pythium insidiosum] 285 2e-92
ref|XP_016608794.1| hypothetical protein SPPG_03868 [Spizellomyc... 285 3e-92
ref|NP_595879.1| 60S ribosomal protein L4 [Schizosaccharomyces p... 283 4e-92
gb|PRW33309.1| 60S ribosomal L4 isoform B [Chlorella sorokiniana] 284 6e-92
emb|CAA51666.1| ribosomal protein L2 [Schizosaccharomyces pombe] 281 2e-91
pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin... 281 2e-91
pdb|4BYN|C Chain C, Cryo-em Reconstruction Of The 80s-eif5b-met-... 281 2e-91
ref|NP_010295.3| ribosomal 60S subunit protein L4B [Saccharomyce... 281 2e-91
gb|AJU71157.1| Rpl4bp [Saccharomyces cerevisiae YJM681] 281 2e-91
gb|AJQ11883.1| Rpl4ap [Saccharomyces cerevisiae YJM1342] 281 2e-91
gb|AJQ06543.1| Rpl4ap [Saccharomyces cerevisiae YJM681] 281 2e-91
gb|AJQ05770.1| Rpl4ap [Saccharomyces cerevisiae YJM555] 281 2e-91
gb|AJP87382.1| Rpl4ap [Saccharomyces cerevisiae YJM1477] >gi|762... 281 2e-91
gb|AJP86229.1| Rpl4ap [Saccharomyces cerevisiae YJM1450] >gi|762... 281 2e-91
gb|AJP83940.1| Rpl4ap [Saccharomyces cerevisiae YJM1433] >gi|768... 281 2e-91
gb|EDV12066.1| ribosomal protein L4A [Saccharomyces cerevisiae R... 281 2e-91
>gb|EDZ73223.1| YDR012Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 232
Score = 281 bits (720), Expect = 3e-93
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>dbj|BAK00534.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 286 bits (733), Expect = 6e-93
Identities = 140/217 (64%), Positives = 164/217 (75%), Gaps = 2/217 (0%)
Frame = +1
Query: 19 SFRPVVAVRKIEG--DAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGH 192
++RP V+ + D + LPAVFTAPIR DIVHFVHTSMAKN+RQ Y+V AGH
Sbjct: 2 AYRPQATVQAVADAKDKAHEQVVLPAVFTAPIRPDIVHFVHTSMAKNRRQPYAVKENAGH 61
Query: 193 QHSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQK 372
QHSAESWGTGRAV+RIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTK WR+WHR INTNQK
Sbjct: 62 QHSAESWGTGRAVARIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKIWRRWHRPINTNQK 121
Query: 373 RFXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDV 552
R+ RGHR+E VPE+PLV+ ++V+S+ KTK A+A LK +GA DV
Sbjct: 122 RYAVASAIAASALPSLVLARGHRVEAVPEIPLVVPNSVESVNKTKNAVALLKTLGALADV 181
Query: 553 EKAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGL 663
E A+ SKK+RAGKGKLR RRH RRGPL+V+ ED G+
Sbjct: 182 EHARDSKKIRAGKGKLRGRRHVARRGPLVVFNEDHGI 218
>ref|NP_596510.1| 60S ribosomal protein L4 [Schizosaccharomyces pombe]
sp|P35679.2|RL4A_SCHPO RecName: Full=60S ribosomal protein L4-A; AltName: Full=L2
emb|CAA21788.1| 60S ribosomal protein L2 (predicted) [Schizosaccharomyces pombe]
Length = 363
Score = 285 bits (728), Expect = 1e-92
Identities = 136/218 (62%), Positives = 166/218 (76%)
Frame = +1
Query: 13 MASFRPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGH 192
MA+ RP V++ +G + ++ALP VF APIR D+V VHT++AKNKRQ Y+V+ +AGH
Sbjct: 1 MAAARPTVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGH 60
Query: 193 QHSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQK 372
Q SAESWGTGRA++RIPRV GGGT R+GQ AFGNMCR GRMFAPTKTWRKWH ++N N+K
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 373 RFXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDV 552
R+ RGHRIE++PEVPLV+DD VQS QKTK+A+A LK + AY DV
Sbjct: 121 RYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDV 180
Query: 553 EKAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
K S+KLRAGKGKLRNRRH QRRGPL+V+ EDAG+V
Sbjct: 181 VKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIV 218
>gb|ACF81765.1| unknown [Zea mays]
Length = 386
Score = 285 bits (730), Expect = 1e-92
Identities = 139/219 (63%), Positives = 166/219 (75%), Gaps = 2/219 (0%)
Frame = +1
Query: 13 MASFRPVVAVRKIEGDAQA--GSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEA 186
+A+ RPVV+V +EG+ A G + LP+VFTAPIR D+V+FVHT++AKN RQAY V+ A
Sbjct: 4 LAASRPVVSVLSVEGETAAVVGQVVLPSVFTAPIRPDVVNFVHTNIAKNNRQAYGVSRRA 63
Query: 187 GHQHSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTN 366
GHQHSAESWGTGRAV+RIPR+SGGGTSRAGQGAFGNMCR GRMFAPT+ WR+WHR++N N
Sbjct: 64 GHQHSAESWGTGRAVARIPRISGGGTSRAGQGAFGNMCRGGRMFAPTRIWRRWHRKVNVN 123
Query: 367 QKRFXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYD 546
Q+RF RGHRIEKVPEVPLVLDD V+S+ KT QA+ L +GA
Sbjct: 124 QRRFAVASALAASALPALVTARGHRIEKVPEVPLVLDDAVESVLKTAQAVKVLAKIGADA 183
Query: 547 DVEKAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGL 663
DVEK K SKK+ G+GK RNRR+T RRGPL+VY GL
Sbjct: 184 DVEKVKDSKKVTTGRGKSRNRRYTTRRGPLVVYANANGL 222
>dbj|GAX99743.1| 60S ribosomal protein L4 [Pythium insidiosum]
Length = 386
Score = 285 bits (729), Expect = 2e-92
Identities = 139/218 (63%), Positives = 166/218 (76%), Gaps = 2/218 (0%)
Frame = +1
Query: 13 MASFRPVVAVRKIEGDAQA--GSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEA 186
+A+ RPVV+V +EG+ A G + LPAVFTAPIR D+V+FVHT+MAKN RQAY V+ A
Sbjct: 4 LAASRPVVSVLSVEGETSAVVGQVVLPAVFTAPIRPDVVNFVHTNMAKNNRQAYGVSRRA 63
Query: 187 GHQHSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTN 366
GHQHSAESWGTGRAVSRIPR++GGGT+R+GQGAFGNMCR GRMFAPT+ WR+WHR+IN N
Sbjct: 64 GHQHSAESWGTGRAVSRIPRIAGGGTARSGQGAFGNMCRGGRMFAPTRIWRRWHRKINVN 123
Query: 367 QKRFXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYD 546
Q+R+ RGHRIEKV EVPLVLDD+V+S+ KT QA+ L +GA
Sbjct: 124 QRRYAVASALAASAVPALVTARGHRIEKVAEVPLVLDDSVESILKTSQAVKVLAKIGADA 183
Query: 547 DVEKAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAG 660
DVEK K SKK+R G+GK RNRR+T RRGPLIVY G
Sbjct: 184 DVEKVKESKKVRTGRGKSRNRRYTTRRGPLIVYANANG 221
>ref|XP_016608794.1| hypothetical protein SPPG_03868 [Spizellomyces punctatus DAOM
BR117]
gb|KND00755.1| hypothetical protein SPPG_03868 [Spizellomyces punctatus DAOM
BR117]
Length = 397
Score = 285 bits (729), Expect = 3e-92
Identities = 141/217 (64%), Positives = 166/217 (76%)
Frame = +1
Query: 16 ASFRPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQ 195
A+ RPVV+V GD+ AG++ LP VF APIR D+V FV T+M KNKRQAY+V+V+AGHQ
Sbjct: 22 AAARPVVSVFSEGGDSVAGTVQLPGVFKAPIRSDVVRFVFTNMNKNKRQAYAVSVKAGHQ 81
Query: 196 HSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKR 375
SAESWGTGRAV+RIPRVSGGGT RAGQ AFGNMCR GRMFAPTKTWRKWH + N NQKR
Sbjct: 82 TSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTKTWRKWHVKTNQNQKR 141
Query: 376 FXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVE 555
F RGH+I++V E+PLV+ + V+S +KTK+A+A LK + AY DVE
Sbjct: 142 FATASAVAASALPSLVFARGHKIDQVNEIPLVIGNGVESFKKTKEAVALLKAINAYTDVE 201
Query: 556 KAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
K SKKLRAG GKLRNRRHTQRRGPL++Y ED GLV
Sbjct: 202 KVTNSKKLRAGVGKLRNRRHTQRRGPLVIYNEDKGLV 238
>ref|NP_595879.1| 60S ribosomal protein L4 [Schizosaccharomyces pombe]
sp|Q9P784.1|RL4B_SCHPO RecName: Full=60S ribosomal protein L4-B
emb|CAB88236.1| 60S ribosomal protein L2 (predicted) [Schizosaccharomyces pombe]
Length = 363
Score = 283 bits (725), Expect = 4e-92
Identities = 136/218 (62%), Positives = 165/218 (75%)
Frame = +1
Query: 13 MASFRPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGH 192
MA+ RP V++ +G + +LALP VF APIR D+V VHT++AKNKRQ Y+V+ +AGH
Sbjct: 1 MAAARPTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGH 60
Query: 193 QHSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQK 372
Q SAESWGTGRA++RIPRV GGGT R+GQ AFGNMCR GRMFAPTKTWRKWH ++N N+K
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 373 RFXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDV 552
R+ RGHRIE++PEVPLV+DD VQS QKTK+A+A LK + AY DV
Sbjct: 121 RYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDV 180
Query: 553 EKAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
K S+KLRAGKGKLRNRRH QRRGPL+V+ ED G+V
Sbjct: 181 IKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIV 218
>gb|PRW33309.1| 60S ribosomal L4 isoform B [Chlorella sorokiniana]
Length = 398
Score = 284 bits (727), Expect = 6e-92
Identities = 142/217 (65%), Positives = 164/217 (75%)
Frame = +1
Query: 13 MASFRPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGH 192
MA+ RP+V+V EG A A +ALPAVF APIR DIV VHT MAKN RQAY+V+ +AGH
Sbjct: 1 MAAARPLVSVIGAEG-AAAEQVALPAVFVAPIRSDIVQTVHTHMAKNARQAYAVSAKAGH 59
Query: 193 QHSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQK 372
Q +AESWGTGRAVSRIPRV GGGT RAGQGAFGNMCR G M+APTK WR+WHR+IN NQK
Sbjct: 60 QTAAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGHMYAPTKVWRRWHRKINVNQK 119
Query: 373 RFXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDV 552
R+ RGH+IE VPEVPLV+ D +S+ KTKQA+ LK VGA DV
Sbjct: 120 RYAVVSAIAASALPALVMARGHKIEAVPEVPLVVSDAAESITKTKQAVELLKKVGALADV 179
Query: 553 EKAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGL 663
EKAKASK LR GKGK+RNRR+ QR+GPL+VYG DAG+
Sbjct: 180 EKAKASKNLRRGKGKMRNRRYVQRKGPLVVYGNDAGI 216
>emb|CAA51666.1| ribosomal protein L2 [Schizosaccharomyces pombe]
Length = 357
Score = 281 bits (720), Expect = 2e-91
Identities = 136/218 (62%), Positives = 165/218 (75%)
Frame = +1
Query: 13 MASFRPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGH 192
MA+ RP V++ +G + +LALP VF APIR D+V VHT++AKNKRQ Y+V+ +AGH
Sbjct: 1 MAAARPTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGH 60
Query: 193 QHSAESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQK 372
Q SAESWGTGRA++RIPRV GGGTSR+GQ AFGNMCR GRMFA TKTWRKWH ++N N+K
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTSRSGQAAFGNMCRSGRMFASTKTWRKWHVKVNQNEK 120
Query: 373 RFXXXXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDV 552
R+ RGHRIE++PEVPLV+DD VQS QKTK+A+A LK + AY DV
Sbjct: 121 RYATCSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDV 180
Query: 553 EKAKASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
K S+KLRAGKGKL NRRH QRRGPL+V+ EDAG+V
Sbjct: 181 IKVANSRKLRAGKGKLANRRHVQRRGPLVVFNEDAGIV 218
>pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h.
Length = 361
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 2 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 61
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 62 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 121
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 122 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 181
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 182 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 215
>pdb|4BYN|C Chain C, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet
Eukaryotic Translation Initiation Complex
pdb|4BYU|C Chain C, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet
Eukaryotic Translation Initiation Complex
pdb|4UJG|F Chain F, Crystal Structure Of Narciclasine Bound To The Yeast 80s
Ribosome
pdb|4UJI|N Chain N, Crystal Structure Of Narciclasine Bound To The Yeast 80s
Ribosome
pdb|4UJL|F Chain F, Crystal Structure Of Lycorine Bound To The Yeast 80s
Ribosome
pdb|4UJN|N Chain N, Crystal Structure Of Lycorine Bound To The Yeast 80s
Ribosome
pdb|4UJQ|F Chain F, Crystal Structure Of Lactimidomycin Bound To The Yeast 80s
Ribosome
pdb|4UJS|N Chain N, Crystal Structure Of Lactimidomycin Bound To The Yeast 80s
Ribosome
pdb|4UJV|F Chain F, Crystal Structure Of T-2 Toxin Bound To The Yeast 80s
Ribosome
pdb|4UJX|N Chain N, Crystal Structure Of T-2 Toxin Bound To The Yeast 80s
Ribosome
pdb|4UK0|F Chain F, Crystal Structure Of Anisomycin Bound To The Yeast 80s
Ribosome
pdb|4UK2|N Chain N, Crystal Structure Of Anisomycin Bound To The Yeast 80s
Ribosome
pdb|4UK5|F Chain F, Crystal Structure Of Cca Trinucleotide Bound To The Yeast
80s Ribosome
pdb|4UK7|N Chain N, Crystal Structure Of Cca Trinucleotide Bound To The Yeast
80s Ribosome
pdb|4UKA|F Chain F, Crystal Structure Of Cycloheximide Bound To The Yeast 80s
Ribosome
pdb|4UKC|N Chain N, Crystal Structure Of Cycloheximide Bound To The Yeast 80s
Ribosome
pdb|4UKG|F Chain F, Crystal Structure Of Blasticidin S Bound To The Yeast 80s
Ribosome
pdb|4UKI|N Chain N, Crystal Structure Of Blasticidin S Bound To The Yeast 80s
Ribosome
pdb|4UKL|F Chain F, Crystal Structure Of Cryptopleurine Bound To The Yeast 80s
Ribosome
pdb|4UKN|N Chain N, Crystal Structure Of Cryptopleurine Bound To The Yeast 80s
Ribosome
pdb|4UKQ|F Chain F, Crystal Structure Of Deoxynivalenol Bound To The Yeast 80s
Ribosome
pdb|4UKS|N Chain N, Crystal Structure Of Deoxynivalenol Bound To The Yeast 80s
Ribosome
pdb|4UKV|F Chain F, Crystal Structure Of Edeine Bound To The Yeast 80s
Ribosome
pdb|4UKX|N Chain N, Crystal Structure Of Edeine Bound To The Yeast 80s
Ribosome
pdb|4UL0|F Chain F, Crystal Structure Of Geneticin Bound To The Yeast 80s
Ribosome
pdb|4UL2|N Chain N, Crystal Structure Of Geneticin Bound To The Yeast 80s
Ribosome
pdb|4UL5|F Chain F, Crystal Structure Of Homoharringtonine Bound To The Yeast
80s Ribosome
pdb|4UL7|N Chain N, Crystal Structure Of Homoharringtonine Bound To The Yeast
80s Ribosome
pdb|4ULA|F Chain F, Crystal Structure Of Nagilactone C Bound To The Yeast 80s
Ribosome
pdb|4ULC|N Chain N, Crystal Structure Of Nagilactone C Bound To The Yeast 80s
Ribosome
pdb|4ULF|F Chain F, Crystal Structure Of Pactamycin Bound To The Yeast 80s
Ribosome
pdb|4ULH|N Chain N, Crystal Structure Of Pactamycin Bound To The Yeast 80s
Ribosome
pdb|4ULK|F Chain F, Crystal Structure Of Phyllanthoside Bound To The Yeast 80s
Ribosome
pdb|4ULN|N Chain N, Crystal Structure Of Phyllanthoside Bound To The Yeast 80s
Ribosome
pdb|4ULQ|F Chain F, Crystal Structure Of Verrucarin Bound To The Yeast 80s
Ribosome
pdb|4ULS|N Chain N, Crystal Structure Of Verrucarin Bound To The Yeast 80s
Ribosome
Length = 361
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 2 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 61
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 62 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 121
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 122 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 181
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 182 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 215
>ref|NP_010295.3| ribosomal 60S subunit protein L4B [Saccharomyces cerevisiae S288C]
sp|P49626.2|RL4B_YEAST RecName: Full=60S ribosomal protein L4-B; AltName: Full=L2;
AltName: Full=Large ribosomal subunit protein uL4-B;
AltName: Full=RP2; AltName: Full=YL2
pdb|2WW9|H Chain H, Cryo-em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|H Chain H, Cryo-em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
pdb|2WWB|H Chain H, Cryo-em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
emb|CAA88072.1| Rlp2bp [Saccharomyces cerevisiae]
emb|CAA65204.1| 60S ribosomal protein [Saccharomyces cerevisiae]
emb|CAA98832.1| RPL4B [Saccharomyces cerevisiae]
gb|AAS56896.1| YDR012W [Saccharomyces cerevisiae]
gb|EDN60357.1| ribosomal protein L4B [Saccharomyces cerevisiae YJM789]
gb|EDV08278.1| ribosomal protein L4B [Saccharomyces cerevisiae RM11-1a]
emb|CAY78520.1| Rpl4bp [Saccharomyces cerevisiae EC1118]
tpg|DAA11858.1| TPA: ribosomal 60S subunit protein L4B [Saccharomyces cerevisiae
S288C]
gb|EHN08021.1| Rpl4bp [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gb|EWG87073.1| Rpl4bp [Saccharomyces cerevisiae R008]
gb|EWG96996.1| Rpl4bp [Saccharomyces cerevisiae R103]
gb|AJU61316.1| Rpl4bp [Saccharomyces cerevisiae YJM270]
gb|AJU62727.1| Rpl4bp [Saccharomyces cerevisiae YJM320]
gb|AJU63425.1| Rpl4bp [Saccharomyces cerevisiae YJM326]
gb|AJU65543.1| Rpl4bp [Saccharomyces cerevisiae YJM451]
gb|AJU68372.1| Rpl4bp [Saccharomyces cerevisiae YJM541]
gb|AJU69064.1| Rpl4bp [Saccharomyces cerevisiae YJM554]
gb|AJU84388.1| Rpl4bp [Saccharomyces cerevisiae YJM1202]
gb|AJU86497.1| Rpl4bp [Saccharomyces cerevisiae YJM1244]
gb|AJU91356.1| Rpl4bp [Saccharomyces cerevisiae YJM1311]
gb|AJU99823.1| Rpl4bp [Saccharomyces cerevisiae YJM1386]
gb|AJV11022.1| Rpl4bp [Saccharomyces cerevisiae YJM1444]
gb|AJV15142.1| Rpl4bp [Saccharomyces cerevisiae YJM1478]
gb|AJV19408.1| Rpl4bp [Saccharomyces cerevisiae YJM1574]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|AJU71157.1| Rpl4bp [Saccharomyces cerevisiae YJM681]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|AJQ11883.1| Rpl4ap [Saccharomyces cerevisiae YJM1342]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|AJQ06543.1| Rpl4ap [Saccharomyces cerevisiae YJM681]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|AJQ05770.1| Rpl4ap [Saccharomyces cerevisiae YJM555]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLAGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|AJP87382.1| Rpl4ap [Saccharomyces cerevisiae YJM1477]
gb|AJP87745.1| Rpl4ap [Saccharomyces cerevisiae YJM1478]
gb|AJP97715.1| Rpl4ap [Saccharomyces cerevisiae YJM1242]
gb|AJP99652.1| Rpl4ap [Saccharomyces cerevisiae YJM193]
gb|AJQ01577.1| Rpl4ap [Saccharomyces cerevisiae YJM271]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLAGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|AJP86229.1| Rpl4ap [Saccharomyces cerevisiae YJM1450]
gb|AJQ04615.1| Rpl4ap [Saccharomyces cerevisiae YJM470]
gb|AJU67657.1| Rpl4bp [Saccharomyces cerevisiae YJM470]
gb|AJV12408.1| Rpl4bp [Saccharomyces cerevisiae YJM1450]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|AJP83940.1| Rpl4ap [Saccharomyces cerevisiae YJM1433]
gb|AJV08282.1| Rpl4bp [Saccharomyces cerevisiae YJM1433]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216
>gb|EDV12066.1| ribosomal protein L4A [Saccharomyces cerevisiae RM11-1a]
Length = 362
Score = 281 bits (720), Expect = 2e-91
Identities = 137/214 (64%), Positives = 165/214 (77%)
Frame = +1
Query: 25 RPVVAVRKIEGDAQAGSLALPAVFTAPIRQDIVHFVHTSMAKNKRQAYSVNVEAGHQHSA 204
RP V V + G+A A +L LPAVF+APIR DIVH V TS+ KNKRQAY+V+ +AGHQ SA
Sbjct: 3 RPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSA 62
Query: 205 ESWGTGRAVSRIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKTWRKWHRRINTNQKRFXX 384
ESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKTWRKW+ ++N N+KR+
Sbjct: 63 ESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 385 XXXXXXXXXXXXXXXRGHRIEKVPEVPLVLDDTVQSLQKTKQAIAALKNVGAYDDVEKAK 564
RGHR+EK+PE+PLV+ ++S+QKTK+A+AALK VGA+ D+ K
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 565 ASKKLRAGKGKLRNRRHTQRRGPLIVYGEDAGLV 666
SKKLRAGKGK RNRR TQRRGPL+VY ED G+V
Sbjct: 183 KSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIV 216