BLASTX nr result

ID: Ophiopogon26_contig00053550 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00053550
         (590 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GBC14476.1| hypothetical protein: PROVISIONAL [Rhizophagus i...    45   8e-06

>dbj|GBC14476.1| hypothetical protein: PROVISIONAL [Rhizophagus irregularis DAOM
           181602]
          Length = 1115

 Score = 45.1 bits (105), Expect(2) = 8e-06
 Identities = 22/34 (64%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -2

Query: 586 CILNPSNLGNN-YYLLNHWLQNSHAINRSCSYGY 488
           CI   +NLGN+ YYLLNHWLQ SHAINR    G+
Sbjct: 807 CIDCSNNLGNHHYYLLNHWLQISHAINRYVRLGF 840



 Score = 32.3 bits (72), Expect(2) = 8e-06
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
 Frame = -3

Query: 495  MDIENTIQDTCSTSVTFRTKNKEQXXXXXXY----------RFIQGRAMPNIG 367
            +DIEN IQ  C TSV      +++                  FIQ RAMPNIG
Sbjct: 846  VDIENAIQGICGTSVAHLEPERKKGNSNWYEWSWPTEGEYAGFIQARAMPNIG 898


Top