BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00045329
         (1144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKC11887.1| pseudouridine synthase [Rhizophagus irregularis]       710   0.0  
gb|PKC71223.1| pseudouridine synthase [Rhizophagus irregularis]       710   0.0  
gb|PKK73601.1| pseudouridine synthase [Rhizophagus irregularis]       707   0.0  
gb|PKY41040.1| pseudouridine synthase [Rhizophagus irregularis]       706   0.0  
dbj|GBC38765.1| rlua family pseudouridine synthase [Rhizophagus ...   676   0.0  
gb|PKY13479.1| pseudouridine synthase [Rhizophagus irregularis]       663   0.0  
gb|POG77578.1| pseudouridine synthase [Rhizophagus irregularis D...   630   0.0  
gb|EXX60881.1| hypothetical protein RirG_175970 [Rhizophagus irr...   243   4e-77
ref|XP_016613171.1| RluA family pseudouridine synthase [Spizello...   214   2e-61
gb|KFH69362.1| hypothetical protein MVEG_04175 [Mortierella vert...   174   1e-46
ref|WP_069185956.1| RluA family pseudouridine synthase [Terasaki...   167   5e-45
gb|OJU32145.1| RNA pseudouridine synthase [Alphaproteobacteria b...   165   4e-44
gb|OFX01793.1| RNA pseudouridine synthase [Alphaproteobacteria b...   164   6e-44
gb|PHX99065.1| RNA pseudouridine synthase [Rhodospirillaceae bac...   164   7e-44
ref|WP_051609738.1| RluA family pseudouridine synthase [Terasaki...   164   7e-44
emb|CDA17697.1| pseudouridine synthase [Acetobacter sp. CAG:267]      163   1e-43
ref|WP_073130929.1| RluA family pseudouridine synthase [Roseomon...   163   2e-43
gb|OYY37550.1| RNA pseudouridine synthase [Rhodospirillales bact...   163   2e-43
ref|WP_092822749.1| RluA family pseudouridine synthase [Rhodospi...   162   2e-43
ref|WP_020696912.1| RluA family pseudouridine synthase [Reyranel...   162   7e-43

>gb|PKC11887.1| pseudouridine synthase [Rhizophagus irregularis]
          Length = 384

 Score =  710 bits (1833), Expect = 0.0
 Identities = 355/369 (96%), Positives = 363/369 (98%), Gaps = 2/369 (0%)
 Frame = +1

Query: 1    NFTGSLNSHFKFHEYVVSDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENE 180
            NFTGSLNSHFKFHEYVV+DDESDMRLDRYLHLRTNLPTSTIQKKIRKNE+KLK LAHENE
Sbjct: 16   NFTGSLNSHFKFHEYVVNDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEIKLKPLAHENE 75

Query: 181  ELDSNEMQTKKTKILSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 360
            ELDSNEM+ KKTK LSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM
Sbjct: 76   ELDSNEMRIKKTKTLSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 135

Query: 361  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 540
            IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL
Sbjct: 136  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 195

Query: 541  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLD 720
            GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNL+HTKI+ PIRYGGKPPFEKVTC+LD
Sbjct: 196  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLSHTKISIPIRYGGKPPFEKVTCILD 255

Query: 721  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 900
            KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL
Sbjct: 256  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 315

Query: 901  DKIDKTSTRSETS--PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 1074
            DKIDKTSTRSETS  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI
Sbjct: 316  DKIDKTSTRSETSFEPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 375

Query: 1075 DAESDILIE 1101
            +AE+DILIE
Sbjct: 376  NAEADILIE 384


>gb|PKC71223.1| pseudouridine synthase [Rhizophagus irregularis]
          Length = 387

 Score =  710 bits (1833), Expect = 0.0
 Identities = 356/369 (96%), Positives = 362/369 (98%), Gaps = 2/369 (0%)
 Frame = +1

Query: 1    NFTGSLNSHFKFHEYVVSDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENE 180
            NFTGSLNSHFKFHEYVV+DDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLK LAHENE
Sbjct: 19   NFTGSLNSHFKFHEYVVNDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENE 78

Query: 181  ELDSNEMQTKKTKILSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 360
            ELDSNEM+ KKTK LSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM
Sbjct: 79   ELDSNEMRIKKTKTLSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 138

Query: 361  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 540
            IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL
Sbjct: 139  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 198

Query: 541  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLD 720
            GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEKVTC+LD
Sbjct: 199  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEKVTCILD 258

Query: 721  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 900
            KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL
Sbjct: 259  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 318

Query: 901  DKIDKTSTRSETS--PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 1074
            DKIDKTSTRSETS  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI
Sbjct: 319  DKIDKTSTRSETSFEPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 378

Query: 1075 DAESDILIE 1101
            +AE+DILIE
Sbjct: 379  NAEADILIE 387


>gb|PKK73601.1| pseudouridine synthase [Rhizophagus irregularis]
          Length = 387

 Score =  707 bits (1826), Expect = 0.0
 Identities = 355/369 (96%), Positives = 362/369 (98%), Gaps = 2/369 (0%)
 Frame = +1

Query: 1    NFTGSLNSHFKFHEYVVSDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENE 180
            NFTGSLNSHFKFHEYVV+DDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLK LAHENE
Sbjct: 19   NFTGSLNSHFKFHEYVVNDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENE 78

Query: 181  ELDSNEMQTKKTKILSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 360
            ELDSNEM+ KKTK LSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM
Sbjct: 79   ELDSNEMRIKKTKTLSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 138

Query: 361  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 540
            IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL
Sbjct: 139  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 198

Query: 541  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLD 720
            GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNL+HTKI+ PIRYGGKP FEKVTC+LD
Sbjct: 199  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLSHTKISIPIRYGGKPSFEKVTCILD 258

Query: 721  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 900
            KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL
Sbjct: 259  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 318

Query: 901  DKIDKTSTRSETS--PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 1074
            DKIDKTSTRSETS  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI
Sbjct: 319  DKIDKTSTRSETSFEPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 378

Query: 1075 DAESDILIE 1101
            +AE+DILIE
Sbjct: 379  NAEADILIE 387


>gb|PKY41040.1| pseudouridine synthase [Rhizophagus irregularis]
          Length = 387

 Score =  706 bits (1822), Expect = 0.0
 Identities = 355/369 (96%), Positives = 361/369 (97%), Gaps = 2/369 (0%)
 Frame = +1

Query: 1    NFTGSLNSHFKFHEYVVSDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENE 180
            NFTGSLNSHFKF EYVV+DDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLK LAHENE
Sbjct: 19   NFTGSLNSHFKFLEYVVNDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENE 78

Query: 181  ELDSNEMQTKKTKILSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 360
            ELDSNEM+ KKTK LSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM
Sbjct: 79   ELDSNEMRIKKTKTLSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 138

Query: 361  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 540
            IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL
Sbjct: 139  IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 198

Query: 541  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLD 720
            GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEKVTC+LD
Sbjct: 199  GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEKVTCILD 258

Query: 721  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 900
            KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL
Sbjct: 259  KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 318

Query: 901  DKIDKTSTRSETS--PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 1074
            DKIDKTSTRSETS  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI
Sbjct: 319  DKIDKTSTRSETSFEPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI 378

Query: 1075 DAESDILIE 1101
            +AE+DILIE
Sbjct: 379  NAEADILIE 387


>dbj|GBC38765.1| rlua family pseudouridine synthase [Rhizophagus irregularis DAOM
            181602]
          Length = 378

 Score =  676 bits (1743), Expect = 0.0
 Identities = 339/354 (95%), Positives = 347/354 (98%), Gaps = 2/354 (0%)
 Frame = +1

Query: 46   VVSDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            +++DDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLK LAHENEELDSNEM+ KKTK L
Sbjct: 25   LINDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENEELDSNEMRIKKTKTL 84

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ 405
            SYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ
Sbjct: 85   SYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ 144

Query: 406  GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR 585
            GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR
Sbjct: 145  GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR 204

Query: 586  ESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANCKTAITY 765
            ESTIEKMYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEKVTC+LDKESSLMANCKTAITY
Sbjct: 205  ESTIEKMYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEKVTCILDKESSLMANCKTAITY 264

Query: 766  YQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETS-- 939
            YQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETS  
Sbjct: 265  YQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETSFE 324

Query: 940  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGIDAESDILIE 1101
            PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI+AE+DILIE
Sbjct: 325  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGINAEADILIE 378


>gb|PKY13479.1| pseudouridine synthase [Rhizophagus irregularis]
          Length = 346

 Score =  663 bits (1711), Expect = 0.0
 Identities = 333/346 (96%), Positives = 340/346 (98%), Gaps = 2/346 (0%)
 Frame = +1

Query: 70   MRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKILSYKVRPGD 249
            MRLDRYLHLRTNLPTSTIQKKIRKNE+KLK LAHENEELDSNEM+ KKTK LSYKVRPGD
Sbjct: 1    MRLDRYLHLRTNLPTSTIQKKIRKNEIKLKPLAHENEELDSNEMRIKKTKTLSYKVRPGD 60

Query: 250  VVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQGGP 429
            VVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQGGP
Sbjct: 61   VVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQGGP 120

Query: 430  KTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKMY 609
            KTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKMY
Sbjct: 121  KTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKMY 180

Query: 610  VAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANCKTAITYYQVIAGTG 789
            VAIVTKFLPRNL+HTKI+ PIRYGGKPPFEKVTC+LDKESSLMANCKTAITYYQVIAGTG
Sbjct: 181  VAIVTKFLPRNLSHTKISIPIRYGGKPPFEKVTCILDKESSLMANCKTAITYYQVIAGTG 240

Query: 790  NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETS--PMYLHLNR 963
            NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETS  PMYLHLNR
Sbjct: 241  NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETSFEPMYLHLNR 300

Query: 964  LVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGIDAESDILIE 1101
            LVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI+AE+DILIE
Sbjct: 301  LVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGINAEADILIE 346


>gb|POG77578.1| pseudouridine synthase [Rhizophagus irregularis DAOM 181602=DAOM
           197198]
          Length = 352

 Score =  630 bits (1624), Expect = 0.0
 Identities = 316/327 (96%), Positives = 320/327 (97%), Gaps = 2/327 (0%)
 Frame = +1

Query: 1   NFTGSLNSHFKFHEYVVSDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENE 180
           NFTGSLNSHFKFHEYVV+DDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLK LAHENE
Sbjct: 19  NFTGSLNSHFKFHEYVVNDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENE 78

Query: 181 ELDSNEMQTKKTKILSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 360
           ELDSNEM+ KKTK LSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM
Sbjct: 79  ELDSNEMRIKKTKTLSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSM 138

Query: 361 IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 540
           IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL
Sbjct: 139 IVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVL 198

Query: 541 GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLD 720
           GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEKVTC+LD
Sbjct: 199 GRTRSAAGKLSHLFRESTIEKMYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEKVTCILD 258

Query: 721 KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 900
           KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL
Sbjct: 259 KESSLMANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL 318

Query: 901 DKIDKTSTRSETS--PMYLHLNRLVIH 975
           DKIDKTSTRSETS  PMYLHLNRLVIH
Sbjct: 319 DKIDKTSTRSETSFEPMYLHLNRLVIH 345


>gb|EXX60881.1| hypothetical protein RirG_175970 [Rhizophagus irregularis DAOM
            197198w]
          Length = 124

 Score =  243 bits (619), Expect = 4e-77
 Identities = 120/124 (96%), Positives = 122/124 (98%), Gaps = 2/124 (1%)
 Frame = +1

Query: 736  MANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDK 915
            MANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDK
Sbjct: 1    MANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDK 60

Query: 916  TSTRSETS--PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGIDAESD 1089
            TSTRSETS  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGI+AE+D
Sbjct: 61   TSTRSETSFEPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGINAEAD 120

Query: 1090 ILIE 1101
            ILIE
Sbjct: 121  ILIE 124


>ref|XP_016613171.1| RluA family pseudouridine synthase [Spizellomyces punctatus DAOM
            BR117]
 gb|KND05132.1| RluA family pseudouridine synthase [Spizellomyces punctatus DAOM
            BR117]
          Length = 460

 Score =  214 bits (544), Expect = 2e-61
 Identities = 140/348 (40%), Positives = 198/348 (56%), Gaps = 14/348 (4%)
 Frame = +1

Query: 49   VSDDESDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKILS 228
            V  +E  +RLD +L  R          KIRKN  +LK L HE     S   +    K   
Sbjct: 118  VEFEEHGLRLDEFLEERL---------KIRKNLARLKVLNHEVAVRGSAHARFVDLKPAG 168

Query: 229  YKVRPGDVVLVRSTDLYK-EAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ 405
             +V  GDVV+V      K EA++ +  +  ++   ++EIE +RS ++YKD++++V+NKP 
Sbjct: 169  -QVHAGDVVVVVMPKRRKPEAEMTKKEKKVLEEQLQDEIEVLRSNVLYKDEQVLVLNKPA 227

Query: 406  GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR 585
            GLA QGG K   H+D LL  LQFD  +PPRLVHRLDK+TTGAL+L RT+ AA +LS+LF+
Sbjct: 228  GLAVQGGSKMGIHLDKLLDGLQFDAAEPPRLVHRLDKDTTGALLLARTKEAAVRLSNLFK 287

Query: 586  ES--TIEKMYVAIVTKFLPRNLT----HTKINTPIRYGGKPPFEKVTCV----LDKESSL 735
             +   ++K Y+A+V   LP   T     T+I T I   GKP  EK++ V    +D  SS 
Sbjct: 288  SAGDGVQKSYLAVVCS-LPEAFTSQSEFTQIVTGIVQVGKPGVEKMSTVEWYDIDAASSA 346

Query: 736  MANCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRL---DK 906
             A  K A+T Y+++      SL+ L P TGRKHQLR HCA +LKAPILGD KY       
Sbjct: 347  EAGIKKAVTEYRILDSGKQASLVELRPSTGRKHQLRLHCAKILKAPILGDYKYGAGCPKS 406

Query: 907  IDKTSTRSETSPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKK 1050
                 +     P++LH+  +++ +W     +L    E+  PLP++ KK
Sbjct: 407  FAGFVSDPRRVPLHLHMRSIILRDWYGTGADL----EVKAPLPSHMKK 450


>gb|KFH69362.1| hypothetical protein MVEG_04175 [Mortierella verticillata NRRL 6337]
          Length = 422

 Score =  174 bits (440), Expect = 1e-46
 Identities = 125/350 (35%), Positives = 187/350 (53%), Gaps = 29/350 (8%)
 Frame = +1

Query: 28   FKFHEYVVSDDESDMRLDRYLHLRTNLPTST-----IQKKIRKNEVK-LKTLAHENEELD 189
            F   E VVS DES MRLDR+L  R +    +     IQK +RK ++K +  +  + E   
Sbjct: 32   FVSKELVVSPDESGMRLDRFLLSRLSKDHPSVNHVNIQKWLRKRQIKKMAPVLDQTESER 91

Query: 190  SNEMQTKKTKILSYKVRP--GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESI--RS 357
              E++ K   + +   R   G +  +R  +   ++        A+++ +E    S+  + 
Sbjct: 92   EEEVKMKAVTVTAGATRTETGQIWRIRLLEAVDQSVE------AMETAAEESDTSLPLQD 145

Query: 358  MIVYKDDEIIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALV 537
             IVYKDD IIV+NKP G+A QGG      VD  L  LQF+Y + P++VHRLDK T+G LV
Sbjct: 146  WIVYKDDRIIVLNKPAGVAVQGGTGVQSSVDSSLSVLQFEYQNRPKIVHRLDKTTSGLLV 205

Query: 538  LGRTRSAAGKLSHLF----------RESTIEKMYVAIVTKFLPRNL----THTKINTPIR 675
            L RTR AA  L+  F           ES I+K Y+AIV    P ++    + T++N  + 
Sbjct: 206  LARTRKAAQDLAKRFHDGSTGQGEDEESGIQKKYIAIVHSKQPLDIPVKDSLTRLNADMM 265

Query: 676  YGGKPPFEKVTCVLDKESSLMANCK-TAITYYQVIAGT----GNYSLLRLYPQTGRKHQL 840
               +   + +T V      L       + T  +V++ +     +++LL LYP+TGRKHQL
Sbjct: 266  TVVRGNTDSITIVDGASPRLTTGTVWPSATDVRVVSQSMHAGDHWALLHLYPKTGRKHQL 325

Query: 841  RSHCAYVLKAPILGDDKYRLDKIDKTSTRSETSPMYLHLNRLVIHNWRTK 990
            R HCA +L APILGD+KY    + K   +SE+S ++LH++ LV+ NW  K
Sbjct: 326  RVHCAQLLNAPILGDEKYSRPLLKK--GKSESSRIHLHMSELVLKNWAEK 373


>ref|WP_069185956.1| RluA family pseudouridine synthase [Terasakiella sp. PR1]
 emb|SCA55269.1| Pseudouridine synthase [Terasakiella sp. PR1]
          Length = 342

 Score =  167 bits (424), Expect = 5e-45
 Identities = 129/360 (35%), Positives = 188/360 (52%), Gaps = 6/360 (1%)
 Frame = +1

Query: 40   EYVVSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKT 216
            +  VS D+ D+RLDR+       L    ++K +RK +++L     + +   S +  TK  
Sbjct: 6    QVTVSADDDDIRLDRWFKRHYPELSYGRLEKLLRKGQIRL-----DGKRAKSKQRITKGQ 60

Query: 217  KILSYKVRP-GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVI 393
             +   +V P GD   +R  +  ++  L           SE EI+ IRS ++Y+DD++IVI
Sbjct: 61   VV---RVPPFGDEGGLRPIEKKEDVHL-----------SEQEIDEIRSWVLYRDDDVIVI 106

Query: 394  NKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLS 573
            NKP GL TQGG    +H+DGLLHAL+++  D PRL HRLDK+T+G LVL R+ + A +L+
Sbjct: 107  NKPAGLPTQGGTGIKRHLDGLLHALKYERADKPRLCHRLDKDTSGVLVLARSANVAAQLT 166

Query: 574  HLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANCKT 753
              F+     K+Y A+  K    N    K+  PI        E++  V+D +       K 
Sbjct: 167  KSFKTKDARKLYWALTVKV--PNPRDGKVFQPIAKYHSHHGERM--VIDADEG-----KD 217

Query: 754  AITYYQVIAGTGNYSL-LRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRS 930
            A T Y+ I  TGN +  + L P TGR HQLR HCAY LK PI GD KY       T    
Sbjct: 218  ARTMYRTIESTGNVAAWVALEPLTGRTHQLRVHCAY-LKTPIQGDGKYGGQDAYLTGD-G 275

Query: 931  ETSPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGIDA---ESDILIE 1101
             +  M+LH  R+ I    + +G     I++T PLP +   +S +FF  D    E+D L +
Sbjct: 276  VSKKMHLHARRIQI---PSPDG--VGVIDVTAPLPEHM-IRSWDFFDFDTGMEEADELFD 329


>gb|OJU32145.1| RNA pseudouridine synthase [Alphaproteobacteria bacterium 65-37]
          Length = 335

 Score =  165 bits (417), Expect = 4e-44
 Identities = 115/339 (33%), Positives = 177/339 (52%), Gaps = 2/339 (0%)
 Frame = +1

Query: 49   VSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            VS+DE+ +RLDR+      +L    +QK +R  +V++     E ++              
Sbjct: 19   VSEDEAGLRLDRWFQKHFPDLSHGALQKLLRTGQVRIDGKRAEGKD-------------- 64

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ 405
              +V PG  + +            R    A  + SE +   I+ M++++DD +IV+NKP 
Sbjct: 65   --RVEPGQTIRLPPGVSAAPPSPSRTKPRAAPAVSERDAAEIQRMVIHRDDHVIVLNKPP 122

Query: 406  GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR 585
            GLA QGG  T KHVDG+L AL+F Y D PRLVHRLDK+T+G L++ RT  AA +L+  FR
Sbjct: 123  GLAVQGGSGTEKHVDGMLDALRFGYEDRPRLVHRLDKDTSGLLLIARTGQAAKRLAESFR 182

Query: 586  ESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANCKTAITY 765
            +   EK+Y A+V    PR      +    R G +   ++    +D E     N + A+T+
Sbjct: 183  DRETEKLYWAVVVGVPPRREGTIDLPLAKRPGAR---DRELMQVDHE-----NGQKALTH 234

Query: 766  YQVIAGTG-NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETSP 942
            ++ I   G   +LL ++P+TGR HQLR HCA +   PILGD KY  ++    S  ++   
Sbjct: 235  FREIDRIGKRAALLAMWPRTGRTHQLRVHCAEI-GCPILGDRKYGGEEA-LLSAVTDARR 292

Query: 943  MYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSE 1059
            ++LH  RL + +  +  G L    E    LP +F++  E
Sbjct: 293  LHLHARRLTLPH-PSGRGELKAEAE----LPPHFRRTVE 326


>gb|OFX01793.1| RNA pseudouridine synthase [Alphaproteobacteria bacterium
            RIFCSPHIGHO2_12_FULL_66_14]
          Length = 335

 Score =  164 bits (416), Expect = 6e-44
 Identities = 120/352 (34%), Positives = 189/352 (53%), Gaps = 5/352 (1%)
 Frame = +1

Query: 49   VSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            VSDDE+ +RLDR+       L    +QK +R  +V++          D   ++ K     
Sbjct: 23   VSDDEAGLRLDRWFQRHFPGLSHGALQKLLRTGQVRV----------DGKRVEGKD---- 68

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPTR-LAIKSFSENEIESIRSMIVYKDDEIIVINKP 402
              +V PG  V      L     L  P +   I + S+ +   I+S++V++DD +IV+NKP
Sbjct: 69   --RVEPGQQVR-----LPPGVTLAPPPKPREIPTVSDRDAAEIQSLVVHRDDHVIVLNKP 121

Query: 403  QGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLF 582
             GLA QGG  T +H+DG+L AL+F + D PRLVHRLDK+T+G L++ RT  AA +L+  F
Sbjct: 122  PGLAVQGGTGTERHIDGMLDALRFGFEDRPRLVHRLDKDTSGLLLIARTGQAAKRLAESF 181

Query: 583  RESTIEKMYVAIVTKFLPRNLTHTKINTPI--RYGGKPPFEKVTCVLDKESSLMANCKTA 756
            R+   EK+Y A+V    P+      I+ PI  R G +   ++    +DKES      + A
Sbjct: 182  RDRETEKLYWAVVVGVPPQ--PEGAIDLPIAKRPGAR---DREMMQVDKESG-----QKA 231

Query: 757  ITYYQVIAGTG-NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSE 933
            +T+++ +   G   +LL L+P+TGR HQLR HCA  +  PILGD KY  ++    +  ++
Sbjct: 232  LTHFRELDRVGKRAALLALWPRTGRTHQLRVHCA-AIGCPILGDGKYGGEEA-LLAAVAD 289

Query: 934  TSPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGIDAESD 1089
               ++LH  RL + +   K       +++T   P +F +++ E FG   + D
Sbjct: 290  ARRLHLHARRLQLPHPSGK-----GDLKVTAEPPPHF-RRTVEAFGFSTDGD 335


>gb|PHX99065.1| RNA pseudouridine synthase [Rhodospirillaceae bacterium]
          Length = 327

 Score =  164 bits (415), Expect = 7e-44
 Identities = 112/341 (32%), Positives = 176/341 (51%), Gaps = 6/341 (1%)
 Frame = +1

Query: 37   HEYVVSDDESDMRLDRYLHLRTNLPTST---IQKKIRKNEVKLK-TLAHENEELDSNEMQ 204
            H+ +V  DE++ RLDR+   R   PT T   ++K +R  ++++    A  N  L+  +  
Sbjct: 5    HQTIVGKDEAEQRLDRWFKRR--YPTLTHGRLEKLLRTGQIRVDGARAKANTRLEVGQ-- 60

Query: 205  TKKTKILSYKVRP-GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDE 381
                   + ++ P GD    +  D             A+ + S+ +   IRS+++YKD +
Sbjct: 61   -------TIRIPPLGDAAAKKKAD-------------AMGNVSDKDAAMIRSIVIYKDSD 100

Query: 382  IIVINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAA 561
            ++ INKP GLA QGG KT +HVDG+L AL FD P+ PRLVHRLD++T+G ++L RT  AA
Sbjct: 101  MLAINKPAGLAVQGGTKTTRHVDGMLDALAFDAPERPRLVHRLDRDTSGVMLLARTVKAA 160

Query: 562  GKLSHLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMA 741
             +L   F+E  ++K+Y A+V      +     I+  +  GG   FE++    D     + 
Sbjct: 161  TRLGKAFQEGDMKKVYWALVHG--RPHFPMGTIDAALAKGGDVGFERMEWNDDDGQDAVT 218

Query: 742  NCKTAITYYQVIAGTGNYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKI-DKT 918
            +      Y  V      ++ L L P+TGR HQ+R+HCA ++K PI+GD KY   K+ D+ 
Sbjct: 219  D------YMTVTHAADKFTWLALMPRTGRTHQIRAHCA-IMKTPIIGDIKYGAPKLYDEG 271

Query: 919  STRSETSPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAY 1041
              +  T  + LH   L +     K+        IT PLP +
Sbjct: 272  ELKGLTQQLCLHARSLTVTLPNRKQA------IITAPLPPH 306


>ref|WP_051609738.1| RluA family pseudouridine synthase [Terasakiella pusilla]
          Length = 342

 Score =  164 bits (416), Expect = 7e-44
 Identities = 121/352 (34%), Positives = 190/352 (53%), Gaps = 5/352 (1%)
 Frame = +1

Query: 49   VSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            VS ++ D+RLDR+       L    ++K +RK +V+L          D   +++K     
Sbjct: 9    VSTEDDDIRLDRWFKRHYPELSYGRLEKLLRKGQVRL----------DGKRVKSKD---- 54

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPT-RLAIKSFSENEIESIRSMIVYKDDEIIVINKP 402
              ++  G VV V     + +   +RP  +   +  SE EIE +RS ++Y+D+++IVINKP
Sbjct: 55   --RIAAGQVVRVPP---FGDDGGIRPIEKKEDEHLSEYEIEEVRSWVLYRDEDVIVINKP 109

Query: 403  QGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLF 582
             GL TQGG    +H+DGLLHAL+F+  + P+L HRLDK+T+G L+L R+ + A +++  F
Sbjct: 110  AGLPTQGGTGIKRHLDGLLHALKFEKTEKPKLCHRLDKDTSGVLLLARSANVAAQMTKAF 169

Query: 583  RESTIEKMYVAIVTKF-LPRNLTHTKINTPI-RYGGKPPFEKVTCVLDKESSLMANCKTA 756
            +     K+Y A+  K   P++    K+  PI ++ G   +     V+D +       + A
Sbjct: 170  KTKAARKLYWALTVKVPSPKD---GKVFQPIAKHRG---YNGERMVIDADEG-----QDA 218

Query: 757  ITYYQVIAGTGNYSL-LRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSE 933
             + Y+ I  TGN +  + L P+TGR HQLR HCAY LK PI GD KY   +   T     
Sbjct: 219  RSLYRTIESTGNVAAWVALEPRTGRTHQLRVHCAY-LKTPIQGDGKYGGQEAYLTGD-GV 276

Query: 934  TSPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGIDAESD 1089
            +  M+LH  RL I    + +G     I++T P+P +   KS +FFG D + +
Sbjct: 277  SKKMHLHARRLQI---PSPDG--VGVIDVTAPMPDHM-LKSWDFFGFDVDQE 322


>emb|CDA17697.1| pseudouridine synthase [Acetobacter sp. CAG:267]
          Length = 309

 Score =  163 bits (412), Expect = 1e-43
 Identities = 113/338 (33%), Positives = 174/338 (51%), Gaps = 5/338 (1%)
 Frame = +1

Query: 49   VSDDESDMRLDR-YLHLRTNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            V +++  +RL+R +L     L    +QK +R  ++K+     + +  ++N      T+I 
Sbjct: 9    VKNEDEGIRLNRWFLKYYPGLSLGRLQKLLRTKQIKV-----DGQRAEANTRLIAGTEI- 62

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ 405
                        R   L  E K+ + T +     S  +   I  M++YKDD +IV+NKP 
Sbjct: 63   ------------RVPPLDNEKKMPKHTEI-----SAYDARFIEDMVIYKDDNLIVLNKPS 105

Query: 406  GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR 585
            GLA QGG  T +H+DG+L AL+FD  + P+LVHR+DK+T+G LVL R R  A  L+  FR
Sbjct: 106  GLAVQGGTNTQRHIDGMLDALKFDNDERPKLVHRIDKDTSGVLVLARNRKTADLLTKAFR 165

Query: 586  ESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGG--KPPFEKVTCVLDKESSLMANCKTAI 759
            E T++K Y+A+V               P +  G  K P EK     D    ++   K A+
Sbjct: 166  EHTLKKTYLALVR------------GVPAKEYGEIKAPLEKA----DGRVQVLEGGKPAV 209

Query: 760  TYYQVIAGTGN-YSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSET 936
            T YQV+   G+ Y+LL   P TGR HQ+R+H  ++ + PILGD KY         T  E 
Sbjct: 210  TEYQVLDCVGDKYALLAASPLTGRTHQIRAHLEFI-RTPILGDGKY-------FGTEREK 261

Query: 937  SPMYLHLNRLVIHNWRTKEGNL-TKSIEITVPLPAYFK 1047
            S M++H  +L +H ++    ++  + + +   LP YFK
Sbjct: 262  SGMFVH--KLHLHAYKIDLSSVYGRKLIVQAKLPGYFK 297


>ref|WP_073130929.1| RluA family pseudouridine synthase [Roseomonas rosea]
 emb|SHI46817.1| 23S rRNA pseudouridine955/2504/2580 synthase [Roseomonas rosea]
          Length = 324

 Score =  163 bits (412), Expect = 2e-43
 Identities = 119/345 (34%), Positives = 173/345 (50%), Gaps = 2/345 (0%)
 Frame = +1

Query: 49   VSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            V++DE+D+RLDR+      +L    +QK +R  +V++          D    +T      
Sbjct: 8    VAEDEADLRLDRWFRRHHPHLTQGALQKMLRTGQVRV----------DGKRAET------ 51

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ 405
              ++ PG  V V       EA    P R A+   SE +   +  M++Y+DD +I +NKP 
Sbjct: 52   GTRLTPGQQVRVPPMP---EAPPPGPERPAV---SERDAAELERMVIYRDDSVIALNKPH 105

Query: 406  GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR 585
            GL  QGGP   +H+DG+L AL+F + + PRLVHRLD++T+G L+L R+ +AA KL+  FR
Sbjct: 106  GLPVQGGPNIARHLDGMLDALRFGHEERPRLVHRLDRDTSGVLLLARSAAAASKLASAFR 165

Query: 586  ESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANCKTAITY 765
                EK Y A+V    P  L   +IN P+   G P  E+     + E         AIT 
Sbjct: 166  SRDAEKTYWALVVG-RPHPLA-GRINMPLAKQGGPRGERTAPAEEGEEG-----AHAITD 218

Query: 766  YQVIAGTGNY-SLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETSP 942
            ++V+     + S L ++P TGR HQLR H A  LK PILGD KY        +   E   
Sbjct: 219  FRVVDNARKHVSWLEMHPLTGRTHQLRVHAAAALKCPILGDGKY-----GGAAAHLEGMS 273

Query: 943  MYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEFFGID 1077
              LHL+   I     + G L+    ++ PLP +   +S  F G D
Sbjct: 274  NLLHLHARSIELPHPEGGTLS----VSAPLPPHM-NESFAFLGFD 313


>gb|OYY37550.1| RNA pseudouridine synthase [Rhodospirillales bacterium 35-66-84]
 gb|OYZ92596.1| RNA pseudouridine synthase [Rhodospirillales bacterium 24-66-33]
 gb|OZB23957.1| RNA pseudouridine synthase [Rhodospirillales bacterium 39-66-50]
          Length = 334

 Score =  163 bits (412), Expect = 2e-43
 Identities = 119/347 (34%), Positives = 183/347 (52%), Gaps = 2/347 (0%)
 Frame = +1

Query: 31   KFHEYVVSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQT 207
            K     V+DDE+ MRLDR+       L    +QK +R  +V++     E ++        
Sbjct: 14   KVQTRAVTDDEAGMRLDRWFQRHFPELSHGALQKLLRTGQVRIDGKRAEGKD-------- 65

Query: 208  KKTKILSYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEII 387
            +     S ++ PG    V +T   K     +PT       S+ +   I+ M++++DD +I
Sbjct: 66   RVEPSQSIRLPPG----VTNTPAPKPRTEAKPT------VSDRDAAEIQRMVIHRDDHVI 115

Query: 388  VINKPQGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGK 567
            V+NKP GLA QGG  T KH+DG+L AL+F +   PRLVHRLDK+T+G L++ RT  AA +
Sbjct: 116  VLNKPPGLAVQGGSGTEKHIDGMLDALRFGFEQRPRLVHRLDKDTSGLLLIARTAQAAKR 175

Query: 568  LSHLFRESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANC 747
            L+  FR+   EK+Y AIV    P+      +    R G +   ++    +D+E     N 
Sbjct: 176  LAESFRDRETEKLYWAIVVGVPPKKEGTIDLPLAKRPGAR---DRELMQVDEE-----NG 227

Query: 748  KTAITYYQVIAGTG-NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTST 924
            + A+T+++ I   G   +LL L+P+TGR HQLR HCA  +  PILGD KY  ++    + 
Sbjct: 228  QKALTHFREIDRAGRRAALLALWPRTGRTHQLRVHCA-EMGCPILGDRKYGGEEA-LLAA 285

Query: 925  RSETSPMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEF 1065
             +E   ++LH  RL + +  + +G LT   E    LP +F +  E F
Sbjct: 286  VAEGRRLHLHARRLSLPH-PSGKGELTAVAE----LPPHFCRTVEAF 327


>ref|WP_092822749.1| RluA family pseudouridine synthase [Rhodospirillales bacterium
            URHD0017]
 emb|SEO48660.1| 23S rRNA pseudouridine955/2504/2580 synthase [Rhodospirillales
            bacterium URHD0017]
          Length = 323

 Score =  162 bits (411), Expect = 2e-43
 Identities = 114/341 (33%), Positives = 180/341 (52%), Gaps = 2/341 (0%)
 Frame = +1

Query: 49   VSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            V+ DE+ +RLDR+       L    +QK +R  +V++     E ++              
Sbjct: 10   VAADEAGLRLDRWFQRHFPELGHGALQKLLRTGQVRIDGKRAEGKD-------------- 55

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQ 405
              +V PG  +  R       A   +P    I + S+ + + +R ++++KDD++IV+NKP 
Sbjct: 56   --RVEPGQTI--RLPPGVTAAPPPKPRE--IPTVSDRDAQEMRGLVIHKDDQVIVLNKPP 109

Query: 406  GLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFR 585
            GLA QGG  T +HVDG+L AL+F Y + PRLVHRLDK+T+G L++ RT  AA +L   FR
Sbjct: 110  GLAVQGGTGTERHVDGMLDALRFGYEERPRLVHRLDKDTSGLLLIARTGLAARRLGDSFR 169

Query: 586  ESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANCKTAITY 765
            +   EK+Y A+V    PR      I+ P+        ++    +D+E     N + A+T+
Sbjct: 170  DRETEKLYWAVVVGMPPR--PEGAIDLPLAKRPGARGDRELMQVDEE-----NGQKALTH 222

Query: 766  YQVIAGTG-NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETSP 942
            ++V+   G   +LL L+P+TGR HQLR HCA +   PILGD KY  ++    S  ++   
Sbjct: 223  FRVLDHAGKRAALLALWPRTGRTHQLRVHCAEI-GCPILGDGKYGGEEA-LLSAVADARR 280

Query: 943  MYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSEEF 1065
            ++LH  RLV+ +   K       + I    P +F++  E F
Sbjct: 281  LHLHARRLVLPHPSGK-----GELAIDAQPPPHFRRTVEAF 316


>ref|WP_020696912.1| RluA family pseudouridine synthase [Reyranella massiliensis]
          Length = 342

 Score =  162 bits (409), Expect = 7e-43
 Identities = 116/340 (34%), Positives = 179/340 (52%), Gaps = 3/340 (0%)
 Frame = +1

Query: 49   VSDDESDMRLDRYLHLR-TNLPTSTIQKKIRKNEVKLKTLAHENEELDSNEMQTKKTKIL 225
            VS DE+ +RLDR+       L    +QK +R  +V++     E ++              
Sbjct: 27   VSGDEAGLRLDRWFQRHFPELSHGALQKLLRTGQVRIDGKRAEGKD-------------- 72

Query: 226  SYKVRPGDVVLVRSTDLYKEAKLVRPTRL-AIKSFSENEIESIRSMIVYKDDEIIVINKP 402
              +V PG  +  R       + L +P    A  + S+ +   I+ M++++DD +IV+NKP
Sbjct: 73   --RVEPGQSI--RLPPGVSASPLPKPRAARAAPAVSDRDAAEIQRMVIHRDDHVIVLNKP 128

Query: 403  QGLATQGGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLF 582
             GLA QGG  T KHVDG+L AL+F Y D PRLVHRLDK+T+G L++ RT  AA +L+  F
Sbjct: 129  PGLAVQGGSGTEKHVDGMLDALRFGYEDRPRLVHRLDKDTSGLLLIARTGQAAKRLAESF 188

Query: 583  RESTIEKMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEKVTCVLDKESSLMANCKTAIT 762
            R+   EK+Y A+V    PR      +    R G +   ++    +D+E     N + A+T
Sbjct: 189  RDRETEKLYWAVVVGVPPRKEGTIDLPLAKRPGAR---DRELMQVDEE-----NGQKALT 240

Query: 763  YYQVIAGTG-NYSLLRLYPQTGRKHQLRSHCAYVLKAPILGDDKYRLDKIDKTSTRSETS 939
            +++ I   G   +LL L+P+TGR HQLR HCA +   PILGD KY  ++    +  ++  
Sbjct: 241  HFREIDRIGKRAALLALWPRTGRTHQLRVHCAEI-GCPILGDRKYGGEEA-LLAAVADAR 298

Query: 940  PMYLHLNRLVIHNWRTKEGNLTKSIEITVPLPAYFKKKSE 1059
             ++LH  RL + +  +  G L    E    LP +F++  E
Sbjct: 299  RLHLHARRLTLPH-PSGRGELRAEAE----LPPHFRRTVE 333