BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00039280
         (5807 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKY37962.1| DNA-directed RNA polymerase II subunit RPB1 [Rhiz...  3170   0.0  
gb|PKK78623.1| DNA-directed RNA polymerase II subunit RPB1 [Rhiz...  3165   0.0  
dbj|GBC35266.1| DNA-directed RNA polymerase II subunit RPB1 [Rhi...  3164   0.0  
gb|PKC14123.1| DNA-directed RNA polymerase II subunit RPB1 [Rhiz...  3161   0.0  
gb|PKY17591.1| DNA-directed RNA polymerase II subunit RPB1 [Rhiz...  3157   0.0  
emb|CEG73711.1| Putative DNA-directed RNA polymerase (Fragment) ...  2026   0.0  
gb|OZJ04949.1| DNA-directed RNA polymerase II subunit rpb1 [Bifi...  2014   0.0  
emb|CEP17467.1| hypothetical protein [Parasitella parasitica]        2011   0.0  
gb|EPB83723.1| DNA-directed RNA polymerase II subunit RPB1 [Muco...  2011   0.0  
dbj|GAN09200.1| beta and beta-prime subunits of DNA dependent RN...  2009   0.0  
gb|OBZ85268.1| DNA-directed RNA polymerase II subunit rpb1, part...  2005   0.0  
emb|CDH50425.1| beta and beta-prime subunits of dna dependentrna...  1996   0.0  
gb|KFH65904.1| DNA-directed RNA polymerase II subunit A [Mortier...  1993   0.0  
emb|SAM02467.1| hypothetical protein [Absidia glauca]                1992   0.0  
gb|ORY95842.1| hypothetical protein BCR43DRAFT_525499 [Syncephal...  1984   0.0  
emb|CDS13468.1| Putative DNA-directed RNA polymerase(Fragment) [...  1972   0.0  
gb|KFH65903.1| DNA-directed RNA polymerase II subunit A, variant...  1967   0.0  
gb|ORZ19705.1| RNA polymerase II [Absidia repens]                    1962   0.0  
ref|XP_007872781.1| DNA-directed RNA polymerase II subunit rpb1 ...  1939   0.0  
ref|XP_018227131.1| DNA-directed RNA polymerase II subunit rpb1 ...  1938   0.0  

>gb|PKY37962.1| DNA-directed RNA polymerase II subunit RPB1 [Rhizophagus irregularis]
          Length = 1860

 Score = 3170 bits (8218), Expect = 0.0
 Identities = 1588/1681 (94%), Positives = 1595/1681 (94%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA
Sbjct: 14   KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARK+RDP
Sbjct: 74   EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKVRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            KRRLRAVWEICKSKMICEKGEDP+NDPDKASEYGDDYVPNGQSSKPIPQRTST+A+DFGL
Sbjct: 134  KRRLRAVWEICKSKMICEKGEDPKNDPDKASEYGDDYVPNGQSSKPIPQRTSTSADDFGL 193

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
            NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE
Sbjct: 194  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 253

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            DLHDLGLNEEYARPDWMIIT           SIQMDGTSRGEDDLTHKLSDILKANQNLR
Sbjct: 254  DLHDLGLNEEYARPDWMIITVLPVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANQNLR 313

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 314  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 373

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS
Sbjct: 374  GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 433

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
            VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG
Sbjct: 434  VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 493

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN
Sbjct: 494  HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 553

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI
Sbjct: 554  KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 613

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH
Sbjct: 614  LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 673

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
            VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA
Sbjct: 674  VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 733

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVII AQQN LECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS
Sbjct: 734  EVIIAAQQNNLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 793

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ
Sbjct: 794  KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 853

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED
Sbjct: 854  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 913

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDACFVESQNIDSLPLSDDAFDKKYL                                 
Sbjct: 914  GMDACFVESQNIDSLPLSDDAFDKKYLVELPKPEDKEKEKEEKEKENREEKKKQELEQEK 973

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                SHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVN+KRLIKNAQQKFKII
Sbjct: 974  VKIKSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNLKRLIKNAQQKFKII 1033

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI
Sbjct: 1034 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 1093

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1094 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 1153

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI
Sbjct: 1154 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 1213

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 3782
            WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN
Sbjct: 1214 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 1273

Query: 3783 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 3962
            KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM
Sbjct: 1274 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 1333

Query: 3963 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 4142
            LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT
Sbjct: 1334 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 1393

Query: 4143 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 4322
            RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT
Sbjct: 1394 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 1453

Query: 4323 RHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYL 4502
            RHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQVAPLGTGDFDVYL
Sbjct: 1454 RHGINRAETGALMRCSFEETVEILMEAAAVGEIDDCRGVAENIMLGQVAPLGTGDFDVYL 1513

Query: 4503 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 4682
            DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT
Sbjct: 1514 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 1573

Query: 4683 PLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 4862
            PLSSYD               VLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS
Sbjct: 1574 PLSSYDSPGPSSPAFSPAFSPVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 1633

Query: 4863 SPAPTAFAHSPGGSSFXXXXXXXXXXXXXXXXXXXXGNFGGATMSASSTINASQSAYRQQ 5042
            SPAPTAFAHSPGGSSF                    GNFGGATM+ASSTINASQS YRQQ
Sbjct: 1634 SPAPTAFAHSPGGSSFTPQSPAYSPTSPSYSPSSPTGNFGGATMNASSTINASQSVYRQQ 1693

Query: 5043 A 5045
            A
Sbjct: 1694 A 1694



 Score = 65.9 bits (159), Expect = 1e-06
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 5403 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 5495
            NYAPSGYSPSGINAATYSPNSLLSQSTINSN
Sbjct: 1814 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 1844


>gb|PKK78623.1| DNA-directed RNA polymerase II subunit RPB1 [Rhizophagus irregularis]
          Length = 1861

 Score = 3165 bits (8206), Expect = 0.0
 Identities = 1588/1682 (94%), Positives = 1595/1682 (94%), Gaps = 1/1682 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            KRVKYVQFGILSPEEIKQMSVALIEHPET+DE GHRPKQGGLLDPRMGTIDRNFKCQTCA
Sbjct: 14   KRVKYVQFGILSPEEIKQMSVALIEHPETMDESGHRPKQGGLLDPRMGTIDRNFKCQTCA 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARK+RDP
Sbjct: 74   EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKVRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTST+A+DFGL
Sbjct: 134  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTSADDFGL 193

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
            NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE
Sbjct: 194  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 253

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            DLHDLGLNEEYARPDWMIIT           SIQMDGTSRGEDDLTHKLSDILKANQNLR
Sbjct: 254  DLHDLGLNEEYARPDWMIITVLPVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANQNLR 313

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 314  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 373

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS
Sbjct: 374  GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 433

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
            VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG
Sbjct: 434  VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 493

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN
Sbjct: 494  HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 553

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI
Sbjct: 554  KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 613

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH
Sbjct: 614  LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 673

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
            VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA
Sbjct: 674  VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 733

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVII AQQN LECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS
Sbjct: 734  EVIIAAQQNNLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 793

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ
Sbjct: 794  KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 853

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED
Sbjct: 854  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 913

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDACFVESQNIDSLPLSDDAFDKKYL                                 
Sbjct: 914  GMDACFVESQNIDSLPLSDDAFDKKYLVELPKPEDKEKEKEEKEMENREEKKKQELEQEK 973

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                SHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVN+KRLIKNAQQKFKII
Sbjct: 974  VKIKSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNLKRLIKNAQQKFKII 1033

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI
Sbjct: 1034 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 1093

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1094 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 1153

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI
Sbjct: 1154 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 1213

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 3782
            WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN
Sbjct: 1214 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 1273

Query: 3783 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 3962
            KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM
Sbjct: 1274 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 1333

Query: 3963 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 4142
            LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT
Sbjct: 1334 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 1393

Query: 4143 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 4322
            RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT
Sbjct: 1394 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 1453

Query: 4323 RHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYL 4502
            RHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQVAPLGTGDFDVYL
Sbjct: 1454 RHGINRAETGALMRCSFEETVEILMEAAAVGEIDDCRGVAENIMLGQVAPLGTGDFDVYL 1513

Query: 4503 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 4682
            DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT
Sbjct: 1514 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 1573

Query: 4683 PLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 4862
            PLSSYD               VLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS
Sbjct: 1574 PLSSYDSPGPSSPAFSPAFSPVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 1633

Query: 4863 SPAPTAFAHSPGGSSFXXXXXXXXXXXXXXXXXXXXGNFGGATMSASSTINASQSAY-RQ 5039
            SPAPTAFAHSPGGSSF                    GNFGGATM+ASSTINASQSAY RQ
Sbjct: 1634 SPAPTAFAHSPGGSSFTPQSPAYSPTSPSYSPSSPTGNFGGATMNASSTINASQSAYNRQ 1693

Query: 5040 QA 5045
            QA
Sbjct: 1694 QA 1695



 Score = 65.9 bits (159), Expect = 1e-06
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 5403 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 5495
            NYAPSGYSPSGINAATYSPNSLLSQSTINSN
Sbjct: 1815 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 1845


>dbj|GBC35266.1| DNA-directed RNA polymerase II subunit RPB1 [Rhizophagus irregularis
            DAOM 181602]
 gb|PKC73289.1| DNA-directed RNA polymerase II subunit RPB1 [Rhizophagus irregularis]
 gb|POG69694.1| DNA-directed RNA polymerase II subunit RPB1 [Rhizophagus irregularis
            DAOM 181602=DAOM 197198]
          Length = 1861

 Score = 3164 bits (8203), Expect = 0.0
 Identities = 1587/1682 (94%), Positives = 1595/1682 (94%), Gaps = 1/1682 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            KRVKYVQFGILSPEEIKQMSVALIEHPET+DE GHRPKQGGLLDPRMGTIDRNFKCQTCA
Sbjct: 14   KRVKYVQFGILSPEEIKQMSVALIEHPETMDESGHRPKQGGLLDPRMGTIDRNFKCQTCA 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARK+RDP
Sbjct: 74   EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKVRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTST+A+DFGL
Sbjct: 134  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTSADDFGL 193

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
            NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE
Sbjct: 194  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 253

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            DLHDLGLNEEYARPDWMIIT           SIQMDGTSRGEDDLTHKLSDILKANQNLR
Sbjct: 254  DLHDLGLNEEYARPDWMIITVLPVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANQNLR 313

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            RYE+DGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 314  RYETDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 373

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS
Sbjct: 374  GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 433

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
            VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG
Sbjct: 434  VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 493

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN
Sbjct: 494  HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 553

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI
Sbjct: 554  KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 613

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH
Sbjct: 614  LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 673

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
            VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA
Sbjct: 674  VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 733

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVII AQQN LECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS
Sbjct: 734  EVIIAAQQNNLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 793

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ
Sbjct: 794  KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 853

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED
Sbjct: 854  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 913

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDACFVESQNIDSLPLSDDAFDKKYL                                 
Sbjct: 914  GMDACFVESQNIDSLPLSDDAFDKKYLVELPKPEDKEKEKEEKEKENREEKKKQELEQEK 973

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                SHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVN+KRLIKNAQQKFKII
Sbjct: 974  VKIKSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNLKRLIKNAQQKFKII 1033

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI
Sbjct: 1034 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 1093

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1094 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 1153

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI
Sbjct: 1154 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 1213

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 3782
            WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN
Sbjct: 1214 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 1273

Query: 3783 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 3962
            KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM
Sbjct: 1274 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 1333

Query: 3963 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 4142
            LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT
Sbjct: 1334 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 1393

Query: 4143 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 4322
            RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT
Sbjct: 1394 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 1453

Query: 4323 RHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYL 4502
            RHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQVAPLGTGDFDVYL
Sbjct: 1454 RHGINRAETGALMRCSFEETVEILMEAAAVGEIDDCRGVAENIMLGQVAPLGTGDFDVYL 1513

Query: 4503 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 4682
            DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT
Sbjct: 1514 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 1573

Query: 4683 PLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 4862
            PLSSYD               VLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS
Sbjct: 1574 PLSSYDSPGPSSPAFSPAFSPVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 1633

Query: 4863 SPAPTAFAHSPGGSSFXXXXXXXXXXXXXXXXXXXXGNFGGATMSASSTINASQSAY-RQ 5039
            SPAPTAFAHSPGGSSF                    GNFGGATM+ASSTINASQSAY RQ
Sbjct: 1634 SPAPTAFAHSPGGSSFTPQSPAYSPTSPSYSPSSPTGNFGGATMNASSTINASQSAYNRQ 1693

Query: 5040 QA 5045
            QA
Sbjct: 1694 QA 1695



 Score = 65.9 bits (159), Expect = 1e-06
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 5403 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 5495
            NYAPSGYSPSGINAATYSPNSLLSQSTINSN
Sbjct: 1815 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 1845


>gb|PKC14123.1| DNA-directed RNA polymerase II subunit RPB1 [Rhizophagus irregularis]
          Length = 1861

 Score = 3161 bits (8196), Expect = 0.0
 Identities = 1586/1682 (94%), Positives = 1594/1682 (94%), Gaps = 1/1682 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            KRVKYVQFGILSPEEIKQMSVALIEHPET+DE GHRPKQGGLLDPRMGTIDRNFKCQTCA
Sbjct: 14   KRVKYVQFGILSPEEIKQMSVALIEHPETMDESGHRPKQGGLLDPRMGTIDRNFKCQTCA 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARK+RDP
Sbjct: 74   EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKVRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTST+A+DFGL
Sbjct: 134  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTSADDFGL 193

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
            NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE
Sbjct: 194  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 253

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            DLHDLGLNEEYARPDWMIIT           SIQMDGTSRGEDDLTHKLSDILKANQNLR
Sbjct: 254  DLHDLGLNEEYARPDWMIITVLPVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANQNLR 313

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            RYE+DGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 314  RYETDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 373

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS
Sbjct: 374  GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 433

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
            VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG
Sbjct: 434  VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 493

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN
Sbjct: 494  HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 553

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI
Sbjct: 554  KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 613

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH
Sbjct: 614  LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 673

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
            VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA
Sbjct: 674  VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 733

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVII AQQN LECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS
Sbjct: 734  EVIIAAQQNNLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 793

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ
Sbjct: 794  KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 853

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED
Sbjct: 854  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 913

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDACFVESQNIDSLPLSDDAFDKKYL                                 
Sbjct: 914  GMDACFVESQNIDSLPLSDDAFDKKYLVELPKPEDKEKEKEEKEKENREEKKKQELEQEK 973

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                SHDEIVKEKIRAEYEQLKTDRFLLQTF FPKGDNRWPLPVN+KRLIKNAQQKFKII
Sbjct: 974  VKIKSHDEIVKEKIRAEYEQLKTDRFLLQTFNFPKGDNRWPLPVNLKRLIKNAQQKFKII 1033

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI
Sbjct: 1034 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 1093

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1094 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 1153

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI
Sbjct: 1154 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 1213

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 3782
            WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN
Sbjct: 1214 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 1273

Query: 3783 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 3962
            KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM
Sbjct: 1274 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 1333

Query: 3963 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 4142
            LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT
Sbjct: 1334 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 1393

Query: 4143 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 4322
            RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT
Sbjct: 1394 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 1453

Query: 4323 RHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYL 4502
            RHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQVAPLGTGDFDVYL
Sbjct: 1454 RHGINRAETGALMRCSFEETVEILMEAAAVGEIDDCRGVAENIMLGQVAPLGTGDFDVYL 1513

Query: 4503 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 4682
            DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT
Sbjct: 1514 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 1573

Query: 4683 PLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 4862
            PLSSYD               VLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS
Sbjct: 1574 PLSSYDSPGPSSPAFSPAFSPVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 1633

Query: 4863 SPAPTAFAHSPGGSSFXXXXXXXXXXXXXXXXXXXXGNFGGATMSASSTINASQSAY-RQ 5039
            SPAPTAFAHSPGGSSF                    GNFGGATM+ASSTINASQSAY RQ
Sbjct: 1634 SPAPTAFAHSPGGSSFTPQSPAYSPTSPSYSPSSPTGNFGGATMNASSTINASQSAYNRQ 1693

Query: 5040 QA 5045
            QA
Sbjct: 1694 QA 1695



 Score = 65.9 bits (159), Expect = 1e-06
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 5403 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 5495
            NYAPSGYSPSGINAATYSPNSLLSQSTINSN
Sbjct: 1815 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 1845


>gb|PKY17591.1| DNA-directed RNA polymerase II subunit RPB1 [Rhizophagus irregularis]
          Length = 1861

 Score = 3157 bits (8185), Expect = 0.0
 Identities = 1585/1682 (94%), Positives = 1593/1682 (94%), Gaps = 1/1682 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            KRVKYVQFGILSPEEIKQMSVALIEHPET+DE GHRPKQGGLLDPRMGTIDRNFKCQTCA
Sbjct: 14   KRVKYVQFGILSPEEIKQMSVALIEHPETMDESGHRPKQGGLLDPRMGTIDRNFKCQTCA 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARK+RDP
Sbjct: 74   EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKVRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTST+A+DFGL
Sbjct: 134  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTSADDFGL 193

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
            NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE
Sbjct: 194  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 253

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            DL DLGLNEEYARPDWMIIT           SIQMDGTSRGEDDLTHKLSDILKANQNLR
Sbjct: 254  DLDDLGLNEEYARPDWMIITVLPVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANQNLR 313

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            RYE+DGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 314  RYETDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 373

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS
Sbjct: 374  GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 433

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
            VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG
Sbjct: 434  VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 493

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN
Sbjct: 494  HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 553

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI
Sbjct: 554  KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 613

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH
Sbjct: 614  LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 673

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
            VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA
Sbjct: 674  VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 733

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVII AQQN LECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS
Sbjct: 734  EVIIAAQQNNLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 793

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ
Sbjct: 794  KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 853

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLG ILQFCYGED
Sbjct: 854  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGYILQFCYGED 913

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDACFVESQNIDSLPLSDDAFDKKYL                                 
Sbjct: 914  GMDACFVESQNIDSLPLSDDAFDKKYLVELPKPEDKEKEKEKKEKENREEKKKQELEQEK 973

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                SHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVN+KRLIKNAQQKFKII
Sbjct: 974  VKIKSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNLKRLIKNAQQKFKII 1033

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI
Sbjct: 1034 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 1093

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1094 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 1153

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI
Sbjct: 1154 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 1213

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 3782
            WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN
Sbjct: 1214 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 1273

Query: 3783 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 3962
            KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM
Sbjct: 1274 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 1333

Query: 3963 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 4142
            LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT
Sbjct: 1334 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 1393

Query: 4143 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 4322
            RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT
Sbjct: 1394 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 1453

Query: 4323 RHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYL 4502
            RHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQVAPLGTGDFDVYL
Sbjct: 1454 RHGINRAETGALMRCSFEETVEILMEAAAVGEIDDCRGVAENIMLGQVAPLGTGDFDVYL 1513

Query: 4503 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 4682
            DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT
Sbjct: 1514 DPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAKT 1573

Query: 4683 PLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 4862
            PLSSYD               VLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS
Sbjct: 1574 PLSSYDSPGPSSPAFSPAFSPVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPS 1633

Query: 4863 SPAPTAFAHSPGGSSFXXXXXXXXXXXXXXXXXXXXGNFGGATMSASSTINASQSAY-RQ 5039
            SPAPTAFAHSPGGSSF                    GNFGGATM+ASSTINASQSAY RQ
Sbjct: 1634 SPAPTAFAHSPGGSSFTPQSPAYSPTSPSYSPSSPTGNFGGATMNASSTINASQSAYNRQ 1693

Query: 5040 QA 5045
            QA
Sbjct: 1694 QA 1695



 Score = 65.9 bits (159), Expect = 1e-06
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +3

Query: 5403 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 5495
            NYAPSGYSPSGINAATYSPNSLLSQSTINSN
Sbjct: 1815 NYAPSGYSPSGINAATYSPNSLLSQSTINSN 1845


>emb|CEG73711.1| Putative DNA-directed RNA polymerase (Fragment) [Rhizopus
            microsporus]
          Length = 1692

 Score = 2026 bits (5249), Expect = 0.0
 Identities = 1047/1653 (63%), Positives = 1244/1653 (75%), Gaps = 22/1653 (1%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSPEEIK MSVA +E PE  +EG  +P+ GGLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVDAVQFGILSPEEIKAMSVAKVEFPELYEEGTQKPRNGGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHI+LAKPVFHIGFL KVKKILEC+C +CSKLK D SN +F  AR+I D 
Sbjct: 74   EGMAECPGHFGHIDLAKPVFHIGFLAKVKKILECVCFHCSKLKIDQSNPRFERARRINDR 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K RLRAVW+I K+KM CE G++ +   +K                          E+F  
Sbjct: 134  KVRLRAVWDIAKTKMTCEGGDEEDGLEEK--------------------------EEFNS 167

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
             K K  HGGCG++QP IRKDGLKLY  F+    ++ +G + +Q+LTPA+V  I K I  +
Sbjct: 168  GKRKSNHGGCGYKQPLIRKDGLKLYAQFRASPGDD-AGSEGKQLLTPAKVLQILKNIPDQ 226

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EE+ARP+WMIIT           SIQMDGTSRGEDDLTHKLSDILKAN N++
Sbjct: 227  DIKDMGLSEEFARPEWMIITVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDILKANANVK 286

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV+EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 287  RCESEGAPVHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 346

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+++D+VGVP+SIA NLT+PEIVTP+N+D LQ+LV+NGP 
Sbjct: 347  GNLMGKRVDFSARTVITGDPNLALDQVGVPRSIARNLTYPEIVTPYNIDKLQQLVRNGPL 406

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHIN+ D++IFNRQPSLHKMSMMG
Sbjct: 407  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMG 466

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+V+VMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AEI EICMVPKQIVSPQSN
Sbjct: 467  HRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSPQSN 526

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            +PVMGIVQDTLCGIRKFT RD FL+KDLVMNI+MWV  WDG IP P ILKP PLWTGKQI
Sbjct: 527  RPVMGIVQDTLCGIRKFTLRDCFLAKDLVMNIVMWVPSWDGYIPPPAILKPRPLWTGKQI 586

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSM+IPKGIN     HSTHPDGE T ISPGDT+V+IE+GEL+CGI+CKKTVGT+  GL+H
Sbjct: 587  LSMVIPKGINCQTF-HSTHPDGETTLISPGDTRVVIENGELICGIVCKKTVGTSNGGLVH 645

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             IM ELGP  AKDFL+G Q VVNYWLLQNGFSIGIGDTIAD+ +M +IT  I+ AK+RV 
Sbjct: 646  TIMNELGPEAAKDFLSGTQLVVNYWLLQNGFSIGIGDTIADQVSMATITNIISQAKQRVQ 705

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVIITAQQ+ LE QPGMT+RESFE KVN+ LN ARD AG+ A+ SL EDNNVKQMVIAGS
Sbjct: 706  EVIITAQQDKLEVQPGMTLRESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVIAGS 765

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFKFRTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 766  KGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPT 825

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI++FCYGED
Sbjct: 826  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGED 885

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDA  VESQ   SL  S++ F+K++                                  
Sbjct: 886  GMDAATVESQKFASLRCSNEDFEKRF----------------RVDVMKDGFKKGTLSYNI 929

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  +E  +  +  E+ QL+ DR  LQT IF  G+++WPLPVN+ RLI NAQQ F I 
Sbjct: 930  RQKIEGNEDAQAILEQEFAQLQEDRHKLQTTIFKNGEDKWPLPVNLSRLIVNAQQIFHID 989

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  RT SD+    VID V  ++ +L +V+GKD+IS E Q NATLLF ILLRS LA KRV+
Sbjct: 990  P--RTPSDINPFQVIDGVSSIVDRLHVVRGKDKISAETQKNATLLFGILLRSTLAVKRVV 1047

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +E+HL  QA  WILGEIE RF +S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1048 EEYHLTSQAFDWILGEIEARFLQSVVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1107

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ +T   EI
Sbjct: 1108 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSRNIELAKEVQVKLEHTTLQKLTSVAEI 1167

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDS-ISGYQSPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD   T I  D +FVE YY++ED +S      SPW+LR ELN  +M+DK +++  + 
Sbjct: 1168 YYDPDPRQTVIAEDVDFVETYYSLEDDNSPFVTRVSPWLLRLELNRAMMVDKGIYVTDIV 1227

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI E F  D+H + +DDN++ +VIRCR++ +       ID+EN  K EED FL+++E++
Sbjct: 1228 QKISEEFRHDLHVMGSDDNSEKQVIRCRVMLDENEKNAEIDDEN--KPEEDTFLRKLESS 1285

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            MLS+I L GI GI +VY+++   T   L+D G  +   EW L+TDGTNLQEV+  + VD 
Sbjct: 1286 MLSSINLCGIPGIKKVYIVERKNT--VLNDKGSFETTTEWGLDTDGTNLQEVMCQEGVDE 1343

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
            TRTYSNN VEIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1344 TRTYSNNTVEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1403

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEILMEAAAVGE+DDC+GVAENIMLGQ+APLGTG+FD+ 
Sbjct: 1404 TRHGINRAETGALMRCSFEETVEILMEAAAVGELDDCKGVAENIMLGQMAPLGTGEFDIV 1463

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTP---------------FTSA 4634
            LD  LL+T       ++   + G     +G  TP  G MTP               F+  
Sbjct: 1464 LDEELLQTVPQDHRQNL---QMGITGDVAGFATPGPGYMTPGVATPYDTRSPDWVDFSQP 1520

Query: 4635 RTPSHFAMTPMYGAKTPLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVG---GIYSYQTS 4805
             +PS     PM+   +P+ +                     G    S G      SY  S
Sbjct: 1521 SSPSE----PMF---SPMGNTGAAGIASPWRGDLSPYAQSPGYSPTSPGYSPSSPSYAAS 1573

Query: 4806 P-YNTGSPSYGPTSPQYSPSSP--APTAFAHSP 4895
            P Y+  SPSY PTSP YSP+SP  +PT+ ++SP
Sbjct: 1574 PGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSP 1606


>gb|OZJ04949.1| DNA-directed RNA polymerase II subunit rpb1 [Bifiguratus adelaidae]
          Length = 2059

 Score = 2014 bits (5219), Expect = 0.0
 Identities = 1037/1638 (63%), Positives = 1243/1638 (75%), Gaps = 4/1638 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV+ VQFGILSPEEIK MSVA +EHPE  D+ GH+PK GGLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVEAVQFGILSPEEIKAMSVAKVEHPELYDDAGHKPKIGGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGMSEC GHFGHIELAKP+ HIGFLPK+KKILEC+C  CSKLK DDSN +F+ AR+IRDP
Sbjct: 74   EGMSECSGHFGHIELAKPILHIGFLPKIKKILECVCYYCSKLKADDSNPQFARARRIRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K RL+AVW+IC  KM+CE G+D + D             NG                   
Sbjct: 134  KVRLKAVWDICSKKMVCEGGDDMQVDSGM----------NGDIDH--------------- 168

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
                + HGGCGH+QPTIRKDGLKLY NFK   S ++S Q+ R  L+  +V  +FK IS +
Sbjct: 169  ----KSHGGCGHKQPTIRKDGLKLYANFKAGTSGDESAQEGRVPLSALKVLQLFKNISDQ 224

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EEYARP+WM+IT           SIQMDGTSRGEDDLTHKLSDILKAN NLR
Sbjct: 225  DIRDMGLSEEYARPEWMLITVLPVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANANLR 284

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R E+DG+P  +V ++E LLQFH ATYMDNE+AGQPQALQKSGRPLKSIRARLKGKEGR+R
Sbjct: 285  RSEADGAPNLIVQDYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRIR 344

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+ VDEVGVP+SIA NLT+PEIVTP+N+D LQ+LV NGP+
Sbjct: 345  GNLMGKRVDFSARTVITGDPNLMVDEVGVPRSIARNLTYPEIVTPYNIDRLQQLVHNGPT 404

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRDTGERIDL++  G   + L  G+KVERHIN+GDI+IFNRQPSLHKMSMMG
Sbjct: 405  EHPGAKYVIRDTGERIDLRYHKGAADIPLHWGYKVERHINDGDIVIFNRQPSLHKMSMMG 464

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFRLNLSVT+PYNADFDGDEMN+H+PQS ET+AE++EICMVPKQIVSPQSN
Sbjct: 465  HRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSAETRAEVQEICMVPKQIVSPQSN 524

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTL GIRKFTKRD FLSK+LVMNI+MW+ +WDG +P P I+KP P+WTGKQI
Sbjct: 525  KPVMGIVQDTLAGIRKFTKRDCFLSKELVMNIVMWIPEWDGFLPAPAIIKPKPMWTGKQI 584

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSMIIPKGIN +   HSTHPDGE T ISPGDT+V IE+GE+LCGIICKKTVGT+  GL+H
Sbjct: 585  LSMIIPKGINCET-THSTHPDGETTWISPGDTRVFIENGEILCGIICKKTVGTSSGGLVH 643

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             I+ E GP  AK+FL+G Q +VNYWLLQNGFSIGIGDTIAD++TME IT  IN AK RV 
Sbjct: 644  TILNEQGPEAAKNFLSGTQTLVNYWLLQNGFSIGIGDTIADRETMEHITNIINGAKARVQ 703

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVI+ AQQ+ LE +PGMTIRESFE+KVN  LN A   AG++ + +L +DNN+KQMV+AGS
Sbjct: 704  EVILAAQQDKLENEPGMTIRESFESKVNVALNKAGADAGKTVQNALRDDNNIKQMVVAGS 763

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFIN+SQM ACVGQQNVEGKRIP+GFKFRTLPHFTKDD++PES+GFVENSYLRGLTPQ
Sbjct: 764  KGSFINVSQMAACVGQQNVEGKRIPYGFKFRTLPHFTKDDYSPESKGFVENSYLRGLTPQ 823

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI+QFCYGED
Sbjct: 824  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQFCYGED 883

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDACFVE Q + SL  +++ FD+ Y                                  
Sbjct: 884  GMDACFVEKQKLPSLNCTNEEFDQCY--------------RVDVMETGGGLSKNAVNYNI 929

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  +E V+  + AEY QL  +R LL+ FIF  G+++WPLP N++RL+ NAQQ F I 
Sbjct: 930  IKEIEGNEEVQAILDAEYRQLAEERSLLREFIFTTGEDKWPLPTNLQRLVTNAQQIFHI- 988

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
              +R  SDL    ++ +V+EL  +L +V+G D+IS EAQSNATLLF+ILLRS  ++KRV+
Sbjct: 989  -DRRKPSDLHPSHIVQSVKELSERLTVVRGSDKISYEAQSNATLLFQILLRSTFSAKRVL 1047

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            DEFHL++++ +W+LGE+E RF  S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1048 DEFHLDKKSFEWLLGEVESRFLMSIVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1107

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I  AKE+Q ++E+TTL+ VT  +EI
Sbjct: 1108 NVTLGVPRLKEIINVAKNIKTPRLTVWLTPERARNIQLAKEVQVSLEHTTLQKVTAASEI 1167

Query: 3603 WYEPDITTTEIESDREFVELYYAM-EDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVG 3779
             Y+PD   T IE D EFV  YYA+ ED   +    SPW+LR ELN  +M+DK+L +  V 
Sbjct: 1168 HYDPDPRNTIIEEDEEFVSTYYALEEDTSPVVTQVSPWLLRLELNRVMMIDKRLDITEVV 1227

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI E+F  D+H I +D+N++  VIRCRI+    + +D   E+      EDVFL+++E N
Sbjct: 1228 AKISEDFRNDLHVIGSDENSEKLVIRCRIML---NDEDKEAEDADDAQTEDVFLRKLEAN 1284

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            MLS+IGLRGI  I +VY+++  ++    D  G  +   EW L+TDG NLQEVL+ + VD 
Sbjct: 1285 MLSSIGLRGIPNIKKVYIVERKESRAQPD--GKFKVFEEWGLDTDGINLQEVLSREGVDS 1342

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
             +TYSNN VEIM+VLGIEATR ALLKELR VIEF GSYVNYRHL+LLCDVMT++GHLMAI
Sbjct: 1343 RKTYSNNTVEIMEVLGIEATRMALLKELRNVIEFGGSYVNYRHLSLLCDVMTTKGHLMAI 1402

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINR ETGALMRCSFEETVEILMEAAAVGE+D C+GVA+NI+LGQ+APLGTG+FDV 
Sbjct: 1403 TRHGINRGETGALMRCSFEETVEILMEAAAVGELDVCKGVADNIILGQMAPLGTGEFDVL 1462

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPAL--GGMTPFTSARTPSHFAMTPMYG 4673
            LD  +L+       +    A E    R +G M      GGMTP  SA TP        Y 
Sbjct: 1463 LDEDMLKHVVIDHRA----AMEAQTMRMNGMMASPYHDGGMTP--SAMTP--------YD 1508

Query: 4674 AKTPLSSYDXXXXXXXXXXXXXXXVLEAGGKS-VSVGGIYSYQTSPYNTGSPSYGPTSPQ 4850
             ++P  +Y                +++ GG S ++VG  +S   SP+   SP Y PTSP 
Sbjct: 1509 MRSP--AYADFSHPGSPVEAVFSPLVQPGGSSPIAVGDAWSGGVSPFAPTSPGYSPTSPG 1566

Query: 4851 YSPSSPAPTAFAHSPGGS 4904
            YSP+SP   ++A SPG S
Sbjct: 1567 YSPASP---SYAASPGYS 1581


>emb|CEP17467.1| hypothetical protein [Parasitella parasitica]
          Length = 1768

 Score = 2011 bits (5211), Expect = 0.0
 Identities = 1043/1655 (63%), Positives = 1236/1655 (74%), Gaps = 19/1655 (1%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSP+EIK MSVA IE PE  DEG  +P+ GGLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVDAVQFGILSPDEIKAMSVAKIEFPELYDEGTQKPRVGGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHIELAKPV+HIGFL KVKKILEC+C +CSKLK D+SN +F  A+KI D 
Sbjct: 74   EGMAECPGHFGHIELAKPVYHIGFLTKVKKILECVCFHCSKLKVDESNPRFERAKKISDS 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K +LRAVW++ K+KM CE               G D   +G   K          E+F  
Sbjct: 134  KAKLRAVWDLAKAKMTCE---------------GSDEAEDGLEEK----------EEFDS 168

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
             K K  HGGCG++QP IRKDGLKLY  F+    ++ SG + RQ LT A+V  I K IS +
Sbjct: 169  GKRKSTHGGCGYKQPLIRKDGLKLYAQFRASAGDD-SGNEGRQQLTAAKVLQILKNISDK 227

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EE+ARP+WMI T           SIQMDGTSRGEDDLTHKLSD+LKAN N++
Sbjct: 228  DIRDMGLSEEFARPEWMITTVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDVLKANGNVK 287

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 288  RCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 347

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+++D+VGVP+SIA NLT+PEIVTP+N+D LQ LV+NGP 
Sbjct: 348  GNLMGKRVDFSARTVITGDPNLALDQVGVPRSIARNLTYPEIVTPYNIDKLQVLVRNGPL 407

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHIN+ D++IFNRQPSLHKMSMMG
Sbjct: 408  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMG 467

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AE+ EICMVPKQIVSPQSN
Sbjct: 468  HRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSN 527

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFT RD FL+KDLVMNI+MWV  WDG IP P ILKP P+WTGKQI
Sbjct: 528  KPVMGIVQDTLCGIRKFTLRDCFLNKDLVMNIVMWVPSWDGYIPPPAILKPKPMWTGKQI 587

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            L+M+IPKGIN     HSTHPDGE T ISPGDT+V+IE+GEL+CGI+CKKTVGTA  GLIH
Sbjct: 588  LAMVIPKGINCQTF-HSTHPDGETTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIH 646

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             IM ELGP  AK+FL G Q VVNYWLLQNGFSIGIGDTIADK +M +IT  I+ AK+RV 
Sbjct: 647  TIMNELGPEAAKNFLGGTQQVVNYWLLQNGFSIGIGDTIADKVSMTTITNIISQAKQRVQ 706

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVIITAQQ+ LE QPGMT+RESFE KVN+ LN ARD AG+ A+ SL EDNNVKQMVI+GS
Sbjct: 707  EVIITAQQDKLEVQPGMTLRESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVISGS 766

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFKFRTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 767  KGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPT 826

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI++FCYGED
Sbjct: 827  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGED 886

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDA  VESQ   SL  ++  F+K+Y                                  
Sbjct: 887  GMDAMSVESQKFFSLKCNEKEFEKRY----------------KVDVMNKGFKKGALNYNV 930

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                   E  +  +  E+ QL  DR  L+T IF  GD++WPLPVN+ RLI N+QQ F + 
Sbjct: 931  LKSIEGSETAQSYLDHEFHQLSEDRQKLRTMIFKNGDDKWPLPVNLSRLITNSQQIFHLD 990

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + ++D +  L  +L +V+G D+IS E Q NATLLF+ILLRS  + KRV+
Sbjct: 991  P--RKPSDIHPLQIVDGINALAQRLLVVRGSDKISSETQKNATLLFQILLRSTFSVKRVV 1048

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +EFHL  QA +WILGEIE RF  S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1049 EEFHLTSQAFEWILGEIESRFLTSIVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1108

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT  TEI
Sbjct: 1109 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSRNIELAKEVQVNLEHTTLQKVTSVTEI 1168

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQ-SPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD   T IE D +FV+ YY +ED +S    + SPW+LR ELN  +M+DK+L++  V 
Sbjct: 1169 YYDPDPRNTIIEEDADFVDTYYQLEDDNSAFVTRVSPWLLRIELNRGMMIDKRLNITEVV 1228

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI E F  D+H + +D+N++  VIRCR++ +    KD +DEE+  + EED FL+++E +
Sbjct: 1229 QKISEEFRSDLHVMGSDENSEKLVIRCRVMMDENEDKD-MDEEDA-RSEEDTFLRKLEAS 1286

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            ML +I LRGI GI +VY+++   T   L++ G  +   EW L+TDG NLQEV+    VD 
Sbjct: 1287 MLGSINLRGIPGIRKVYIVERKNT--ILNEKGNFETTTEWGLDTDGINLQEVMCQYGVDE 1344

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
            TRTYSNN VEIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1345 TRTYSNNTVEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1404

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1405 TRHGINRAETGALMRCSFEETVEILMEAAAVGELDDCRGVAENIMLGQMAPLGTGEFDVM 1464

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTP---------------FTSA 4634
            LD  +L++       ++     G     +G  TP  G MTP               F+  
Sbjct: 1465 LDEEMLQSVPQDHRQNLQMGVAG---DVAGFATPGPGYMTPNMATPYDTRSPDWVDFSQP 1521

Query: 4635 RTPSHFAMTPMYGAKTPLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSP-Y 4811
             +PS    +PM  + T  S                     + G S S     SY  SP Y
Sbjct: 1522 SSPSEPMFSPMGNSGTATSMASPWRGDLSPYAHSPGYSPTSPGYSPSSP---SYAASPGY 1578

Query: 4812 NTGSPSYGPTSPQYSPSSP--APTAFAHSPGGSSF 4910
            +  SP+Y PTSP YSP+SP  +PT+ ++SP   S+
Sbjct: 1579 SPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1613


>gb|EPB83723.1| DNA-directed RNA polymerase II subunit RPB1 [Mucor circinelloides f.
            circinelloides 1006PhL]
          Length = 1771

 Score = 2011 bits (5211), Expect = 0.0
 Identities = 1043/1659 (62%), Positives = 1237/1659 (74%), Gaps = 23/1659 (1%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSP+EIK MSVA IE+PE  DEG  +P+ GGLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVDAVQFGILSPDEIKAMSVAKIEYPELYDEGTQKPRNGGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHIELAKPV+HIGFL KVKKILEC+C +CSKLK D+SN +F  A+KI D 
Sbjct: 74   EGMAECPGHFGHIELAKPVYHIGFLTKVKKILECVCFHCSKLKVDESNPRFERAKKITDS 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K +LRAVW++ K+KM CE               G D    G   K          E+F  
Sbjct: 134  KAKLRAVWDLAKAKMTCE---------------GSDETEGGLEEK----------EEFDN 168

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
             K K  HGGCG++QP IRKDGLKLY  F+    ++ SG + RQ LT A+V  I K IS +
Sbjct: 169  GKRKSTHGGCGYKQPLIRKDGLKLYAQFRASAGDD-SGNEGRQQLTAAKVLQILKNISDK 227

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EE+ARP+WMI T           SIQMDGTSRGEDDLTHKLSD+LKAN N++
Sbjct: 228  DIRDMGLSEEFARPEWMITTVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDVLKANGNVK 287

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 288  RCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 347

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+++D+VGVP+SIA NLT+PEIVTP+N+D LQ LV+NGP 
Sbjct: 348  GNLMGKRVDFSARTVITGDPNLALDQVGVPRSIARNLTYPEIVTPYNIDRLQVLVRNGPL 407

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHIN+ D++IFNRQPSLHKMSMMG
Sbjct: 408  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMG 467

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AE+ EICMVPKQIVSPQSN
Sbjct: 468  HRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSN 527

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFT RD FL+KDLVMNI+MWV  WDG IP P ILKP P+WTGKQI
Sbjct: 528  KPVMGIVQDTLCGIRKFTLRDCFLTKDLVMNIVMWVPSWDGYIPPPAILKPKPMWTGKQI 587

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            L+M+IPKGIN     HSTHPDGE T ISPGDT+V+IE+GEL+CGI+CKKTVGTA  GLIH
Sbjct: 588  LAMVIPKGINCQTF-HSTHPDGETTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIH 646

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             IM ELGP  AK+FL G Q VVNYWLLQNGFSIGIGDTIADK +M +IT  I+ AK+RV 
Sbjct: 647  TIMNELGPEAAKNFLGGTQQVVNYWLLQNGFSIGIGDTIADKASMTTITNIISQAKQRVQ 706

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVIITAQQ+ LE QPGMT+RESFE KVN+ LN ARD AG+ A+ SL EDNNVKQMVI+GS
Sbjct: 707  EVIITAQQDKLEVQPGMTLRESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVISGS 766

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFKFRTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 767  KGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPT 826

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI++FCYGED
Sbjct: 827  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGED 886

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDA  VESQ   SL  ++  F+K+Y                                  
Sbjct: 887  GMDAMSVESQKFFSLKCNEQEFEKRY----------------KIDVMNKGFRKGALNYNV 930

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                   E  +  +  E+ QL  DR  L+T IF  GD++WPLPVN+ RLI N+QQ F + 
Sbjct: 931  LKSIEGSETAQSYLDHEFHQLSEDRQKLRTVIFKNGDDKWPLPVNLSRLITNSQQIFHLD 990

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + ++D +  L  +L +V+G D+IS E Q NATLLF+ILLRS  + KRV+
Sbjct: 991  P--RKPSDIHPLQIVDGINALAQRLLVVRGSDKISNETQKNATLLFQILLRSTFSVKRVV 1048

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +EFHL  QA +WILGEIE RF  S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1049 EEFHLTSQAFEWILGEIESRFLTSIVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1108

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT  TEI
Sbjct: 1109 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSRNIELAKEVQVNLEHTTLQKVTSVTEI 1168

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQ-SPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD   T IE D +FV+ YY +ED +S    + SPW+LR ELN  +M+DK+L++  V 
Sbjct: 1169 YYDPDPRNTIIEEDADFVDTYYQLEDDNSAFVTRVSPWLLRIELNRGMMIDKRLNITEVV 1228

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI E F  D+H + +D+N++  VIRCR++ +    KD +DEE+  + EED FL+++E +
Sbjct: 1229 QKISEEFRSDLHVMGSDENSEKLVIRCRVMMDENEDKD-MDEEDA-RSEEDTFLRKLEAS 1286

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            ML +I LRGI GI +VY+++   T   L++ G  +   EW L+TDG NLQEV+    VD 
Sbjct: 1287 MLGSINLRGIPGIRKVYIVERKNT--ILNEKGNFETTTEWGLDTDGINLQEVMCQYGVDE 1344

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
            TRTYSNN VEIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1345 TRTYSNNTVEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1404

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1405 TRHGINRAETGALMRCSFEETVEILMEAAAVGELDDCRGVAENIMLGQMAPLGTGEFDVM 1464

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTP---------------FTSA 4634
            LD  +L++       ++     G     +G  TP  G MTP               F+  
Sbjct: 1465 LDEEMLQSVPQDHRQNMQMGVAG---DVAGFATPGPGYMTPNMATPYDTRSPDWVDFSQP 1521

Query: 4635 RTPSHFAMTPM--YGAKTPLSS---YDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQ 4799
             +PS    +PM   GA T ++S    D                      S +    YS  
Sbjct: 1522 SSPSEPMFSPMGNSGAATSIASPWRGDLSPYAQSPGYSPTSPGYSPSSPSYAASPGYSPA 1581

Query: 4800 TSPYNTGSPSYGPTSPQYSPSSP--APTAFAHSPGGSSF 4910
            +  Y+  SPSY PTSP YSP+SP  +PT+ ++SP   S+
Sbjct: 1582 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1620


>dbj|GAN09200.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Mucor
            ambiguus]
          Length = 1771

 Score = 2009 bits (5205), Expect = 0.0
 Identities = 1041/1659 (62%), Positives = 1236/1659 (74%), Gaps = 23/1659 (1%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSP+EIK MSVA IE PE  DEG  +P+ GGLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVDAVQFGILSPDEIKAMSVAKIEFPELYDEGTQKPRNGGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHIELAKPV+HIGFL KVKKILEC+C +CSKLK D++N +F  A+KI D 
Sbjct: 74   EGMAECPGHFGHIELAKPVYHIGFLTKVKKILECVCFHCSKLKVDETNPRFERAKKITDS 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K +LRAVW++ K+KM CE               G D    G   K          E+F  
Sbjct: 134  KAKLRAVWDLAKAKMTCE---------------GSDEAEGGLEEK----------EEFDN 168

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
             K K  HGGCG++QP IRKDGLKLY  F+    ++ SG + RQ LT A+V  I K IS +
Sbjct: 169  GKRKSTHGGCGYKQPLIRKDGLKLYAQFRASPGDD-SGNEGRQQLTAAKVLQILKNISDK 227

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EE+ARP+WMI T           SIQMDGTSRGEDDLTHKLSD+LKAN N++
Sbjct: 228  DIRDMGLSEEFARPEWMITTVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDVLKANGNVK 287

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 288  RCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 347

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+++D+VGVP+SIA NLT+PEIVTP+N+D LQ LV+NGP 
Sbjct: 348  GNLMGKRVDFSARTVITGDPNLALDQVGVPRSIARNLTYPEIVTPYNIDRLQVLVRNGPL 407

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHIN+ D++IFNRQPSLHKMSMMG
Sbjct: 408  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMG 467

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AE+ EICMVPKQIVSPQSN
Sbjct: 468  HRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSN 527

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFT RD FL+KDLVMNI+MWV  WDG IP P ILKP P+WTGKQI
Sbjct: 528  KPVMGIVQDTLCGIRKFTLRDCFLTKDLVMNIVMWVPSWDGYIPPPAILKPKPMWTGKQI 587

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            ++M+IPKGIN     HSTHPDGE T ISPGDT+V+IE+GEL+CGI+CKKTVGTA  GLIH
Sbjct: 588  VAMVIPKGINCQTF-HSTHPDGETTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIH 646

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             IM ELGP  AK+FL G Q VVNYWLLQNGFSIGIGDTIADK +M +IT  I+ AK+RV 
Sbjct: 647  TIMNELGPEAAKNFLGGTQQVVNYWLLQNGFSIGIGDTIADKASMTTITNIISQAKQRVQ 706

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVIITAQQ+ LE QPGMT+RESFE KVN+ LN ARD AG+ A+ SL EDNNVKQMVI+GS
Sbjct: 707  EVIITAQQDKLEVQPGMTLRESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVISGS 766

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFKFRTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 767  KGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPT 826

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI++FCYGED
Sbjct: 827  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGED 886

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDA  VESQ   SL  ++  F+K+Y                                  
Sbjct: 887  GMDAMSVESQKFFSLKCNEQEFEKRY----------------KIDVMNKGFRKGALNYNV 930

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                   E  +  +  E+ QL  DR  L+T IF  GD++WPLPVN+ RLI N+QQ F + 
Sbjct: 931  LKSIEGSETAQSYLDHEFHQLSEDRRKLRTIIFKNGDDKWPLPVNLSRLITNSQQIFHLD 990

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + ++D +  L  +L +V+G D+IS E Q NATLLF+ILLRS  + KRV+
Sbjct: 991  P--RKPSDIHPLQIVDGINALAQRLLVVRGSDKISSETQKNATLLFQILLRSTFSVKRVV 1048

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +EFHL  QA +WILGEIE RF  S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1049 EEFHLTSQAFEWILGEIESRFLTSIVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1108

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT  TEI
Sbjct: 1109 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSRNIELAKEVQVNLEHTTLQKVTSVTEI 1168

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQ-SPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD   T IE D +FV+ YY +ED +S    + SPW+LR ELN  +M+DK+L++  V 
Sbjct: 1169 YYDPDPRNTIIEEDADFVDTYYQLEDDNSAFVTRVSPWLLRIELNRGMMIDKRLNITEVV 1228

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI E F  D+H + +D+N++  VIRCR++ +    KD +DEE+  + EED FL+++E +
Sbjct: 1229 QKISEEFRSDLHVMGSDENSEKLVIRCRVMMDENEDKD-MDEEDA-RSEEDTFLRKLEAS 1286

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            ML +I LRGI GI +VY+++   T   L++ G  +   EW L+TDG NLQEV+    VD 
Sbjct: 1287 MLGSINLRGIPGIRKVYIVERKNT--ILNEKGNFETTTEWGLDTDGINLQEVMCQYGVDE 1344

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
            TRTYSNN VEIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1345 TRTYSNNTVEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1404

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1405 TRHGINRAETGALMRCSFEETVEILMEAAAVGELDDCRGVAENIMLGQMAPLGTGEFDVM 1464

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTP---------------FTSA 4634
            LD  +L++       ++     G     +G  TP  G MTP               F+  
Sbjct: 1465 LDEEMLQSVPQDHRQNMQMGVAG---DVAGFATPGPGYMTPNMATPYDTRSPEWADFSQP 1521

Query: 4635 RTPSHFAMTPM--YGAKTPLSS---YDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQ 4799
             +PS    +PM   GA T ++S    D                      S +    YS  
Sbjct: 1522 SSPSEPMFSPMGNSGAATSIASPWRGDLSPYAQSPGYSPTSPGYSPSSPSYAASPGYSPA 1581

Query: 4800 TSPYNTGSPSYGPTSPQYSPSSP--APTAFAHSPGGSSF 4910
            +  Y+  SPSY PTSP YSP+SP  +PT+ ++SP   S+
Sbjct: 1582 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1620


>gb|OBZ85268.1| DNA-directed RNA polymerase II subunit rpb1, partial [Choanephora
            cucurbitarum]
          Length = 1628

 Score = 2005 bits (5194), Expect = 0.0
 Identities = 1042/1659 (62%), Positives = 1233/1659 (74%), Gaps = 23/1659 (1%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSPEEI  MSVA IE+PE  DEG  +P++ GLLDP +GTIDRN+KCQTC 
Sbjct: 14   RRVDAVQFGILSPEEIIAMSVAKIEYPELYDEGTQKPRKNGLLDPHLGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHIELAKPV+HIGFL KVKKILEC+C +CSKLK D+SN +F+ ARKI D 
Sbjct: 74   EGMAECPGHFGHIELAKPVYHIGFLSKVKKILECVCFHCSKLKVDESNPRFARARKISDS 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K +LRAVW++ KSKM CE               G D    G   K          E+F  
Sbjct: 134  KAKLRAVWDLAKSKMTCE---------------GSDETEGGLEEK----------EEFDS 168

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
             K K  HGGCG +QP IRKDGLKLY +F+    +E +  + ++ LT A+V  I K IS +
Sbjct: 169  GKRKSKHGGCGSKQPLIRKDGLKLYAHFRASAGDEAN--EGKKPLTAAKVLQILKNISDQ 226

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EE+ARP+WMIIT           SIQMDGTSRGEDDLTHKLSDILKAN N++
Sbjct: 227  DIRDMGLSEEFARPEWMIITVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDILKANANVK 286

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 287  RCESEGAPVHVVQEFEQLLQFHTATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 346

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN++VD+VGVP+SIA NLT+PEIVTP+N+D LQ LV+NGP 
Sbjct: 347  GNLMGKRVDFSARTVITGDPNLAVDQVGVPRSIARNLTYPEIVTPYNIDKLQALVRNGPL 406

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHIN+ D++IFNRQPSLHKMSMMG
Sbjct: 407  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMG 466

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AE+ EICMVPKQIVSPQSN
Sbjct: 467  HRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSN 526

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFT RD FL+KDLVMNI+MWV  WDG IP P ILKP P+WTGKQI
Sbjct: 527  KPVMGIVQDTLCGIRKFTLRDCFLTKDLVMNIVMWVPSWDGYIPPPAILKPKPMWTGKQI 586

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            L+M+IPKGIN     HSTHPDGE T ISPGDT+V+IE+GEL+CGI+CKKTVGTA  GLIH
Sbjct: 587  LAMVIPKGINCQTF-HSTHPDGETTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIH 645

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             IM ELG   AK+FL G Q VVNYWLLQNGFSIGIGDTIADK +M +IT  I+ AK+RV 
Sbjct: 646  TIMNELGSEAAKNFLGGTQQVVNYWLLQNGFSIGIGDTIADKVSMATITNIISQAKQRVQ 705

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            EVIITAQQ+ LE QPGMT+RESFE KVN+ LN ARD AG+ A+ SL EDNNVKQMVIAGS
Sbjct: 706  EVIITAQQDKLEVQPGMTLRESFEAKVNQTLNKARDDAGKMAQNSLKEDNNVKQMVIAGS 765

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFKFRTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 766  KGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPT 825

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI+QFCYGED
Sbjct: 826  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQFCYGED 885

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDA  VESQ   SL  ++D F+K+Y                                  
Sbjct: 886  GMDAMAVESQKFFSLKCNEDEFEKRY----------------KVDVMTQGFKKGALNYNV 929

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                   E  +  +  E+ QL  DR  L+  IF  GD++WPLPVN++RLI N+QQ F + 
Sbjct: 930  LKSIEGSEQAQSYLDHEFYQLSEDREKLRQTIFKSGDDKWPLPVNLQRLITNSQQIFHLD 989

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + ++D V  L  +L +V+G D+IS E Q NATLLF+I+LRS  A KRV+
Sbjct: 990  P--RKPSDIHPLQIVDGVNALAQRLLVVRGSDKISSETQRNATLLFQIMLRSTFAVKRVV 1047

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +EFHL  QA +WILGEIE RF  S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1048 EEFHLTSQAFEWILGEIESRFLTSIVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1107

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT  TEI
Sbjct: 1108 NVTLGVPRLKEIINVAKNIKTPRLEVWLDSERSRNIELAKEVQVNLEHTTLQKVTSVTEI 1167

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQ-SPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD   T IE D +FV+ YY +ED +S    + SPW+LR ELN  +M+DK+L++  V 
Sbjct: 1168 YYDPDPRNTVIEEDVDFVDTYYQLEDDNSAFVTRVSPWLLRIELNRGMMIDKRLNITEVV 1227

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI E F  D+H I +D+N++  ++RCR++ +    KD  DEE   + EED FL+++E +
Sbjct: 1228 QKISEEFRNDLHVIGSDENSEKLIVRCRVMMDEHEDKDMDDEEG--RTEEDTFLRKLEAS 1285

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            ML +I LRGI GI +VY+++   T   L + G+ +   EW L+TDG NLQ+V+    VD 
Sbjct: 1286 MLGSINLRGIPGIKKVYIVERKNT--TLTEKGVFETTTEWGLDTDGINLQQVMCQHGVDE 1343

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
            TRTYSNN VEIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1344 TRTYSNNTVEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1403

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1404 TRHGINRAETGALMRCSFEETVEILMEAAAVGELDDCRGVAENIMLGQMAPLGTGEFDVM 1463

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTP---------------FTSA 4634
            LD  +L++       ++     G     +G  TP  G MTP               F+  
Sbjct: 1464 LDEEMLQSVPQDHRQNLQMGMAG---DTAGFATPGPGYMTPNMATPYDTRSPDWVDFSQP 1520

Query: 4635 RTPSHFAMTPM--YGAKTPLSS---YDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQ 4799
             +PS    +PM   GA   L+S    D                      S +    YS  
Sbjct: 1521 SSPSEPMFSPMGNSGAGGSLASPWRGDLSPYAQSPGYSPTSPGYSPSSPSYAASPGYSPA 1580

Query: 4800 TSPYNTGSPSYGPTSPQYSPSSP--APTAFAHSPGGSSF 4910
            +  Y+  SPSY PTSP YSP+SP  +PT+ ++SP   S+
Sbjct: 1581 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1619


>emb|CDH50425.1| beta and beta-prime subunits of dna dependentrna-polymerase
            [Lichtheimia corymbifera JMRC:FSU:9682]
          Length = 1774

 Score = 1996 bits (5171), Expect = 0.0
 Identities = 1031/1657 (62%), Positives = 1241/1657 (74%), Gaps = 21/1657 (1%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSPEEIK MSVA +E PE  DEG  +P+ GGLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVAAVQFGILSPEEIKAMSVAKVEFPELYDEGTQKPRVGGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ CPGHF HIELAKPVFHIGFL KVKKILEC+C +CSKLK DDSN +F  ARKIRDP
Sbjct: 74   EGMAVCPGHFAHIELAKPVFHIGFLTKVKKILECVCFHCSKLKVDDSNPRFVRARKIRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K RLRAVW++ K+KM+CE G++ ++  D   +                            
Sbjct: 134  KARLRAVWDLAKTKMVCEGGDENDDGLDDREDAD-------------------------- 167

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
             K K  HGGCG++QPTIRKDGLKLY   K  +S + S  + RQ LT  +V  I K IS +
Sbjct: 168  GKRKHAHGGCGYKQPTIRKDGLKLYAQTK-GNSGDDSATEGRQQLTANKVLQILKNISDQ 226

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL++E+ARP+WMIIT           SIQMDGTSRGEDDLTHKLSD+LKAN N+R
Sbjct: 227  DIRDMGLSDEFARPEWMIITVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDVLKANANVR 286

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 287  RCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 346

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+S+D+VGVP+SIA NLT+PEIVTP+N+D LQ LV+NGP 
Sbjct: 347  GNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARNLTYPEIVTPYNIDKLQALVRNGPL 406

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRDTGERIDL +      + LQ G+KVERHIN+ D++IFNRQPSLHKMSMMG
Sbjct: 407  EHPGAKYVIRDTGERIDLSYRKRAGEIPLQYGYKVERHINDDDVVIFNRQPSLHKMSMMG 466

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFRLNLSVT+PYNADFDGDEMN+H+PQS+ET+AE+ EICMVPKQIVSPQSN
Sbjct: 467  HRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSN 526

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFT RDTFL+KD+VMNI+MWV DWDG IP P I+KP  +WTGKQI
Sbjct: 527  KPVMGIVQDTLCGIRKFTLRDTFLTKDMVMNIVMWVPDWDGYIPPPAIIKPKAMWTGKQI 586

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            L+M+IPKGIN     HSTHPD E T ISPGDT+V++E+GEL+CGI+CKKTVGTA  GL+H
Sbjct: 587  LAMVIPKGINCQTF-HSTHPDREHTYISPGDTRVIVENGELICGIVCKKTVGTASGGLVH 645

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             I+ E G   AK+FL G Q VVNYWLLQNGFSIGIGDTIAD++TM +IT  I  AK+RV 
Sbjct: 646  TIVNEQGAEAAKNFLTGTQQVVNYWLLQNGFSIGIGDTIADRNTMATITNVIAQAKQRVQ 705

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            E+IITAQQ+ LE QPGMT+RE+FE KVN+ LN ARD AG+ A+++L  DNNVKQMV+AGS
Sbjct: 706  EIIITAQQDKLEVQPGMTLRETFEAKVNQTLNKARDDAGKMAQENLKIDNNVKQMVLAGS 765

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GF++RTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 766  KGSFINISQMSACVGQQNVEGKRIPYGFQYRTLPHFSKDDHSPESRGFVENSYLRGLTPT 825

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI+Q  YGED
Sbjct: 826  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQMVYGED 885

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            G+DACFVE Q + ++  S++ F +++                                  
Sbjct: 886  GLDACFVEKQKLATIGCSEEQFVERF---------------KVDLASKKGFRPGTLNYNV 930

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  +E+++ ++  E+ +L+ DR LL+ +IF  G+++WPLPVN++RLI NAQQ F I 
Sbjct: 931  LKAVEGNEMLQNQLDQEFLRLEEDRHLLREYIFKDGEDKWPLPVNLQRLITNAQQIFHID 990

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + VID +  L  +L +V+G D+IS EAQ NAT LF+ LLRS  A KRV+
Sbjct: 991  P--RKPSDIHPLQVIDGISSLADRLLVVRGSDKISAEAQKNATCLFRSLLRSTFAVKRVV 1048

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +E+HL  QA +WILGEIE RFQ ++V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1049 EEYHLTSQAFEWILGEIESRFQTAMVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1108

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT RTEI
Sbjct: 1109 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSRNIELAKEVQVHLEHTTLQKVTARTEI 1168

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDS-ISGYQSPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD   T IE D +FV+ YY +ED +S +    SPW+LR EL+  +M+DK+L++  V 
Sbjct: 1169 FYDPDPRNTIIEEDADFVDTYYQLEDDNSPVVTRVSPWLLRIELDRGMMVDKRLNITEVV 1228

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             +I E F  D+H I +DDN++  +IRCR++ +    K  +DE+ G + EED FL+++E +
Sbjct: 1229 QRISEEFKSDLHVIGSDDNSEKLIIRCRVMMDENEEKG-MDEDEG-RAEEDTFLRKLETS 1286

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            MLS+I LRGI  I +VY+++   T   L+ +G      EW L+TDG NLQ+V+    VD 
Sbjct: 1287 MLSSINLRGIPRIQKVYIVERKDTR--LNANGNFDTVTEWGLDTDGINLQQVMCQRGVDE 1344

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
             RTYSNN VEIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1345 RRTYSNNTVEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1404

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEIL+EAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1405 TRHGINRAETGALMRCSFEETVEILLEAAAVGELDDCRGVAENIMLGQLAPLGTGEFDVM 1464

Query: 4500 LDPILLRT-------TAPAGDSSIVKAKEGYDYRRSGNMTPALG--------GMTPFTSA 4634
            LD  +L+T       T P G    V    G+     G MTP LG            F+  
Sbjct: 1465 LDEDMLKTIPHDNRQTMPNGVPGDV---GGFTTPGPGYMTPNLGTPYDTRSPDWVDFSHP 1521

Query: 4635 RTPSHFAMTPM--YGAKTPLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSP 4808
             +PS    +PM   GA +P  +                     G    S     SY TSP
Sbjct: 1522 SSPSEPMFSPMGNTGAASPSGASPWRGDLSPYAASPGYSPTSPGYSPSSP----SYITSP 1577

Query: 4809 -YNTGSPSYGPTSPQYSPSSP--APTAFAHSPGGSSF 4910
             Y+  SP+Y PTSP YSP+SP  +PT+ ++SP   S+
Sbjct: 1578 GYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1614


>gb|KFH65904.1| DNA-directed RNA polymerase II subunit A [Mortierella verticillata
            NRRL 6337]
          Length = 1825

 Score = 1993 bits (5162), Expect = 0.0
 Identities = 1025/1650 (62%), Positives = 1246/1650 (75%), Gaps = 14/1650 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSPEEIK MSVA IEH E +DEG  RPK GGL DPRMGTI+RNFKCQTC+
Sbjct: 14   RRVDCVQFGILSPEEIKNMSVAKIEHAELIDEGTKRPKIGGLHDPRMGTINRNFKCQTCS 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHIELAKPV+  GFL KVKKILEC+C +CSKLK DD+N+KF  AR+IRDP
Sbjct: 74   EGMAECPGHFGHIELAKPVYLNGFLTKVKKILECVCYSCSKLKIDDNNSKFVRARRIRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K RL+AVWE+ KSKM+CE G+D   D +   E  D+   NG    P P++ S        
Sbjct: 134  KVRLKAVWELAKSKMVCEGGDDI--DAEMQEEEVDE---NGM---PRPKKIS-------- 177

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
                  HGGCGHRQP  RK+GL L +NFK   S++ S  + ++ LTP+  Y I K+IS E
Sbjct: 178  ------HGGCGHRQPIFRKEGLGLSVNFKANASDD-SQPEGKRTLTPSDAYHILKRISDE 230

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+  +GL+ E+ARP+WMI+T           SIQMDG+S GEDDLTHKL  I+K N ++ 
Sbjct: 231  DIEAMGLSPEFARPEWMIMTVLPIPPLAVRPSIQMDGSSTGEDDLTHKLFAIIKTNADVY 290

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R   DG+PAH++ + E LLQ+H ATYMDN++AGQP A  K+GRPLKSIRARLKGKEGRLR
Sbjct: 291  RCAQDGTPAHLIQQHEQLLQYHVATYMDNDIAGQPPAAHKNGRPLKSIRARLKGKEGRLR 350

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+S+DEVGVP+SIA  LT+PE+VTP+N+D LQ+LV+NGP+
Sbjct: 351  GNLMGKRVDFSARTVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNGPT 410

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGA YVIRD G+RIDL+       V LQ GWKVERHIN+GD++IFNRQPSLHKMSMMG
Sbjct: 411  EHPGAVYVIRDDGQRIDLRWNK--REVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMG 468

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            HK+RVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQSVET+AEI EICMVP+QIVSPQSN
Sbjct: 469  HKIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSN 528

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCG+RKFTKRD FL+K++VMN++MWV  W+G +PTP ILKP PLWTGKQ+
Sbjct: 529  KPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLVMWVPGWEGFLPTPAILKPKPLWTGKQM 588

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSMIIPKGIN     HSTHPD E +DISPGDTKV++E+GEL+CGI+CKKTVGT+  GLIH
Sbjct: 589  LSMIIPKGINCI-CYHSTHPDNEESDISPGDTKVIVENGELICGIVCKKTVGTSGGGLIH 647

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
            VIM + GP  AK F NGCQ VVNYWLLQ+GFSIGIGDT+AD+ T+ +IT  I++A   V 
Sbjct: 648  VIMNQHGPEVAKTFFNGCQTVVNYWLLQHGFSIGIGDTVADRSTVMTITSIISNATNNVN 707

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            ++II AQQ+ LEC+PGMT+RE+FE+ VN+ LNTARD AG+ A++SL EDNNVKQMVI+GS
Sbjct: 708  DLIIQAQQDKLECKPGMTLRETFESLVNRALNTARDDAGKMAQQSLREDNNVKQMVISGS 767

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFIN+SQMTACVGQQNVEGKRIPFGFK+RTLPHFTKDDH+PESRGFVENSYLRGLTPQ
Sbjct: 768  KGSFINVSQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPQ 827

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLG ++QFCYGED
Sbjct: 828  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFCYGED 887

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMDAC VE Q +D++ +S+ AF+KKY                                  
Sbjct: 888  GMDACHVEKQPLDTVKMSNAAFEKKY-----RIDLTDKSKSFKNGTLDYNVFKQIAEADE 942

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  +  ++  +  E++QL  DR LL+ +IF +GDN WP+P NI+R I N++Q F + 
Sbjct: 943  EAAKRGEPDMQTLLEQEFKQLDEDRHLLRNYIFTEGDNSWPMPTNIRRYIWNSKQMFHV- 1001

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
               +  SDL    ++++++ L  +L +V+G DRISVEAQ NATLLF++L+RS LA +RVI
Sbjct: 1002 -DHKRPSDLDPRHILESIKNLEKQLVVVRGTDRISVEAQDNATLLFRMLIRSTLAVRRVI 1060

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +E+HL ++A  W++GEI  RF  ++V+PGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1061 EEYHLTREAFDWVVGEIGSRFAHAIVNPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 1120

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVA NIKTPS++++L     ++++RAK++Q  +EYT LK VT  TEI
Sbjct: 1121 NVTLGVPRLKEIINVATNIKTPSLNVYLTPDCARNMERAKQVQVALEYTNLKKVTSSTEI 1180

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGN 3782
             Y+PD   T IE D++FV+ YYAM D D  +   SPW+LR ELN  +MLDKKL M  V N
Sbjct: 1181 HYDPDPENTNIEEDQDFVQAYYAMPDDDLHANRTSPWLLRIELNRKMMLDKKLTMADVSN 1240

Query: 3783 KIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNM 3962
            KI E+F +D+  I +DDNA+  +IRCRIISE  +     D++   + EEDVFLK++E+++
Sbjct: 1241 KISEDFQRDLMCICSDDNAEKLIIRCRIISEEAA-----DKQTDVQEEEDVFLKKIESSL 1295

Query: 3963 LSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHT 4142
            LS+IGLRGIK I+RVY+++  K  IY+ + G    + EW LET G+NL+ V+  ++VD T
Sbjct: 1296 LSSIGLRGIKNIARVYMVEKKK--IYIKNDGTFGSQMEWYLETSGSNLKAVMCEEDVDST 1353

Query: 4143 RTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 4322
            RTYSNNC E+M VLGIEA R ALLKELRGVIEFDGSYVNYRHL+LLCDVMT RGHLMAIT
Sbjct: 1354 RTYSNNCGEVMSVLGIEAARQALLKELRGVIEFDGSYVNYRHLSLLCDVMTHRGHLMAIT 1413

Query: 4323 RHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYL 4502
            RHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FD+ L
Sbjct: 1414 RHGINRAETGALMRCSFEETVEILMEAAAVGELDDCRGVAENIMLGQLAPLGTGEFDLML 1473

Query: 4503 DPILLRTTAPAGDSSIVKAKEGYDY-----RRSGNMTPALGGMTP----FTSARTPSHFA 4655
            D  +L T        ++    G          S  MTP   G +P    F+   +P    
Sbjct: 1474 DEKMLSTVVEGPRPGMMGMGMGMGMGLSSDNLSSQMTP-YDGRSPQYVDFSHPGSPMDAV 1532

Query: 4656 MTPMY--GAKTPLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSP-YNTGSP 4826
             +PM   G+ +PL +                    + G S S      Y TSP Y+  SP
Sbjct: 1533 FSPMVNSGSSSPLGASSWSDPSSPFGATSPGYSPASPGYSPSSP---MYATSPGYSPTSP 1589

Query: 4827 SYGPTSPQYSPSSP--APTAFAHSPGGSSF 4910
            SY PTSP YSP+SP  +PT+ ++SP   S+
Sbjct: 1590 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY 1619


>emb|SAM02467.1| hypothetical protein [Absidia glauca]
          Length = 1583

 Score = 1992 bits (5160), Expect = 0.0
 Identities = 1028/1635 (62%), Positives = 1225/1635 (74%), Gaps = 13/1635 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSP+EIK MSVA IE PE  DEG  +P+ GGLLDPRMGTIDRN+KCQTC 
Sbjct: 15   RRVDAVQFGILSPDEIKAMSVAKIEFPELYDEGTQKPRAGGLLDPRMGTIDRNYKCQTCG 74

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHI+LAKPV+HIGFL KVKKILEC+C +CSKLK DDSN +F  ARKIRD 
Sbjct: 75   EGMAECPGHFGHIDLAKPVYHIGFLTKVKKILECVCFHCSKLKVDDSNPRFVRARKIRDQ 134

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K R++AVWE+ KSKM+CE G+   ND D   +  D+                        
Sbjct: 135  KTRMKAVWELAKSKMVCEGGD---NDEDGLEDDLDE------------------------ 167

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
             K K  HGGCG++QP IRKDGLKLY +F+   S++ SG D + +LT ++V  I K I+ +
Sbjct: 168  -KRKNKHGGCGNKQPLIRKDGLKLYAHFRSTASDD-SGNDGKTLLTASKVLQILKNITDQ 225

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EEYARP+WMI T           SIQMDG+SRGEDDLTHKLSD+LKAN N+R
Sbjct: 226  DIRDMGLSEEYARPEWMITTILPVPPPQVRPSIQMDGSSRGEDDLTHKLSDVLKANANVR 285

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 286  RCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 345

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+S+DEVGVP+SIA NLT+PEIVT +N+D LQ LV+NGP 
Sbjct: 346  GNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYPEIVTTYNIDKLQALVRNGPL 405

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHI +GD++IFNRQPSLHKMSMMG
Sbjct: 406  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQLGYRVERHIVDGDVVIFNRQPSLHKMSMMG 465

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H++RVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AEI EICMVPKQIVSPQSN
Sbjct: 466  HRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSPQSN 525

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTL GIRKFT RDTFL+KDLVMNI+MWV DWDG IP P ILKP PLWTGKQI
Sbjct: 526  KPVMGIVQDTLAGIRKFTLRDTFLTKDLVMNIVMWVPDWDGFIPPPAILKPKPLWTGKQI 585

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            +SM+IPKGIN     +  HPD E T ISPGD++V+IE+GEL+CGI+CKKTVGTA  GLIH
Sbjct: 586  VSMVIPKGINCQTF-YFNHPDDETTYISPGDSRVIIENGELVCGIVCKKTVGTAGGGLIH 644

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             I+ ELG   A+DFL G Q VVNYWLLQNGFSIGIGDTIADK TM +IT  I+ AK+RV 
Sbjct: 645  TIVNELGSEAARDFLTGTQQVVNYWLLQNGFSIGIGDTIADKQTMATITNIISQAKQRVQ 704

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            E+IITAQQ+ LE QPGMT+RESFE KVN+ LN ARD AG+ A+ +L  DNNVKQMV+AGS
Sbjct: 705  EIIITAQQDKLEIQPGMTLRESFEAKVNQTLNKARDDAGKLAQTNLKIDNNVKQMVMAGS 764

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFK RTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 765  KGSFINISQMSACVGQQNVEGKRIPYGFKLRTLPHFSKDDHSPESRGFVENSYLRGLTPT 824

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI++FCYGED
Sbjct: 825  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGED 884

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMD C VE Q + SL  SD  F+++Y                                  
Sbjct: 885  GMDGCSVEKQKLASLRASDKQFEERY----------------RVDLADGGFRKGALGYDV 928

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  +E  ++ +  E+ QL  DR +++ FIF +GD++WPLPVN++RLI NAQQ F I 
Sbjct: 929  LKDIDGNETAQQLLDQEFLQLSEDRDIMRRFIFKQGDDKWPLPVNLQRLITNAQQMFHID 988

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + ++D +  L  +L +V+G D+IS E Q NATLLF++LLRS  + KRV+
Sbjct: 989  P--RKPSDVHPLQILDCISSLADRLVVVRGSDKISAETQRNATLLFQMLLRSTFSVKRVV 1046

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +EFHL+ QA +W+LGEIE RF  S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1047 EEFHLSSQAFEWVLGEIESRFLTSIVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1106

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT  +EI
Sbjct: 1107 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSRNIELAKEVQVHLEHTTLQKVTSASEI 1166

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDS-ISGYQSPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD  +T IE D EFV+ YY +ED +S      SPW+LR ELN  +M+DK+L++  V 
Sbjct: 1167 YYDPDPRSTIIEEDAEFVDTYYQLEDDNSPFVTRVSPWLLRIELNRGMMIDKRLNITEVV 1226

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI + F  D+H I +D+N++  +IRCR++S+    KD  DE+   K EED FL+++E++
Sbjct: 1227 QKISDEFKNDLHVIGSDENSEKLIIRCRVMSDENEEKDMDDEDT--KTEEDTFLRKLESS 1284

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            MLS+I LRGI  I +VY+++   T   L+  G  ++  EW L+TDG NLQ+V+    VD 
Sbjct: 1285 MLSSINLRGIPRIQKVYIVERKDT--ILNSQGKFEQTTEWGLDTDGINLQQVMCQHGVDE 1342

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
             RTYSNN VEIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1343 RRTYSNNTVEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1402

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1403 TRHGINRAETGALMRCSFEETVEILMEAAAVGELDDCRGVAENIMLGQMAPLGTGEFDVI 1462

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTPFTSARTPSHFAMTPMYGAK 4679
            LD  +L+T        ++    G     SG  TP  G MTP  S  TP            
Sbjct: 1463 LDEEMLKTVPENQRHQLM--PNGVPGDISGFATPGPGFMTP--SMATPYDTRSPDWVDFS 1518

Query: 4680 TPLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGG------IYSYQTSP-YN-----TGS 4823
             P S  +                  +G    S+G       +  Y +SP Y+       S
Sbjct: 1519 APSSPSEPMFSPMG----------NSGANGASIGASPWRSDLSPYASSPGYSPSTPFAAS 1568

Query: 4824 PSYGPTSPQYSPSSP 4868
            P Y P+SP YSPSSP
Sbjct: 1569 PGYSPSSPSYSPSSP 1583


>gb|ORY95842.1| hypothetical protein BCR43DRAFT_525499 [Syncephalastrum racemosum]
          Length = 1745

 Score = 1984 bits (5139), Expect = 0.0
 Identities = 1024/1656 (61%), Positives = 1230/1656 (74%), Gaps = 20/1656 (1%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSPEEIK MSVA IE PE  DEG  +P+  GLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVDAVQFGILSPEEIKAMSVAKIEFPELYDEGSQKPRANGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHF HIELAKPV+HIGFL KVKKILEC+C +CSKLK DDSN +F  ARK+RDP
Sbjct: 74   EGMAECPGHFAHIELAKPVYHIGFLTKVKKILECVCFHCSKLKVDDSNPRFVQARKLRDP 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K RLRAVW++ K+K +CE  E+ ++  D+                          ED G 
Sbjct: 134  KARLRAVWDLAKAKNVCEGSEENDDMDDR--------------------------ED-GE 166

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
            +K KR HGGCG++QPTIRKDGLKLY   +   ++E   +  RQ LT ++V  I K IS +
Sbjct: 167  SKRKRAHGGCGYKQPTIRKDGLKLYAQLRSNQADESGNE--RQQLTASKVLQILKAISDQ 224

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EEYARP+WMIIT           SIQMDGTSRGEDDLTHKLSDI+KAN N+R
Sbjct: 225  DIRDMGLSEEYARPEWMIITTLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDIIKANLNVR 284

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 285  RCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 344

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+++D+VGVP+SIA NLT+PEIVTP+N+D LQ LV+NGP 
Sbjct: 345  GNLMGKRVDFSARTVITGDPNLALDQVGVPRSIARNLTYPEIVTPYNIDKLQALVRNGPL 404

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHIN+ D++IFNRQPSLHKMSMMG
Sbjct: 405  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMG 464

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AE+ EICMVPKQIVSPQSN
Sbjct: 465  HRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSN 524

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTLCGIRKFT RD FL+KDLVMNI+MWV DWDG IP P ILKP P+W+GKQI
Sbjct: 525  KPVMGIVQDTLCGIRKFTLRDCFLTKDLVMNIVMWVPDWDGYIPPPAILKPKPMWSGKQI 584

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSM+IP+GIN     HSTHP+ E T ISPGDT+V+IEDGELL GI+CKKTVGTA  GLIH
Sbjct: 585  LSMVIPRGINCQTF-HSTHPENEHTFISPGDTRVIIEDGELLSGIVCKKTVGTAGGGLIH 643

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             I  E G   AK+FL G Q VVNYWLLQNGFSIGIGDTIAD  TM +IT  I  AK+ V 
Sbjct: 644  TIFNEQGSEAAKNFLTGTQQVVNYWLLQNGFSIGIGDTIADTATMATITNIIAQAKQHVQ 703

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            E+I TAQQ+ LE QPGMT+RESFE KVN+ LN ARD +G+ A+++L +DNNVKQMV+AGS
Sbjct: 704  EIINTAQQDKLEVQPGMTLRESFEAKVNQTLNKARDDSGKMAQQNLKDDNNVKQMVVAGS 763

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFKFRTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 764  KGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFSKDDHSPESRGFVENSYLRGLTPT 823

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI+Q  YGED
Sbjct: 824  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQMVYGED 883

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            G+D C VE Q + S+  S+  FD ++                                  
Sbjct: 884  GLDGCTVEKQKLVSVNCSEKQFDDRF-----------------RVDLNEGFRKGALDYSV 926

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                 +D  + ++   E+ +L  DR LL+  IF  G+++WPLPVN++RLI NAQQ F I 
Sbjct: 927  LKSIENDADLPDEFAKEFTRLADDRELLRNHIFKNGEDKWPLPVNLQRLITNAQQIFHID 986

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + V+D V  L  +L +V+G D+IS+EAQ NAT LF+ LLRS  A+KRVI
Sbjct: 987  P--RKPSDIHPMQVLDGVASLADRLLVVRGNDKISLEAQRNATTLFQALLRSTFATKRVI 1044

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +E+HL  QA +W+LGE+E RFQ SLV+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1045 EEYHLTSQAFEWVLGELETRFQTSLVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1104

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +   +I+ AKE+Q ++E+TTL+ VT   EI
Sbjct: 1105 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSSNIELAKEVQVSLEHTTLQKVTSAAEI 1164

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDS-ISGYQSPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD  +T IE D +FV+ YY +ED +S +    SPW+LR ELN  +M+DK+L++  V 
Sbjct: 1165 YYDPDPRSTIIEEDVDFVDTYYQLEDDNSPVVTRVSPWLLRIELNRGMMIDKRLNITEVV 1224

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI E F  D+H I +D+N++  +IRCR++ +    ++  D E+  + EED FL+++E++
Sbjct: 1225 QKITEEFRSDLHVIGSDENSEKLIIRCRVMMD----EEDKDMEDDSRAEEDTFLRKLESS 1280

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            MLS+I LRGI  I +VY+++       L+  G  +   EW L+TDG NL EV++ + VD 
Sbjct: 1281 MLSSINLRGIPRIQKVYIVERKDRR--LNAKGDFETVTEWGLDTDGINLLEVMSQEGVDE 1338

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
             RTYSNN VEIM+VLG+EATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1339 RRTYSNNTVEIMEVLGVEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1398

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINR +TGALMRCSFEETVEIL+EAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1399 TRHGINRTQTGALMRCSFEETVEILLEAAAVGELDDCRGVAENIMLGQLAPLGTGEFDVM 1458

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTP---------------FTSA 4634
            LD  +L T       ++     G      G +TP  G MTP               F+  
Sbjct: 1459 LDEEMLATIPSEARPTLANGVAG---DMPGFITPGPGFMTPSLATPYDSRSPAYVDFSHP 1515

Query: 4635 RTPSHFAMTPM--YGAKTPLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSP 4808
             TP+    +PM   GA +P  +                    + G S S     SY +  
Sbjct: 1516 STPAEPMFSPMGNMGAASPAGASPWRDNMSPYGGGSPGYSPSSPGYSPSSP---SYGSPG 1572

Query: 4809 YNTGSPSYGPTSPQYSPSSP--APTAFAHSPGGSSF 4910
            Y+  SPSY PTSP YSP+SP  +PT+ ++SP   S+
Sbjct: 1573 YSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608


>emb|CDS13468.1| Putative DNA-directed RNA polymerase(Fragment) [Lichtheimia ramosa]
          Length = 1743

 Score = 1972 bits (5110), Expect = 0.0
 Identities = 1014/1639 (61%), Positives = 1226/1639 (74%), Gaps = 21/1639 (1%)
 Frame = +3

Query: 57   MSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCAEGMSECPGHFGHIELAKP 236
            MSVA +E PE  DEG  +P+ GGLLDPRMGTIDRN+KCQTC EGM+ CPGHF HIELAKP
Sbjct: 1    MSVAKVEFPELYDEGTQKPRVGGLLDPRMGTIDRNYKCQTCGEGMAVCPGHFAHIELAKP 60

Query: 237  VFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDPKRRLRAVWEICKSKMICE 416
            VFHIGFL KVKKILEC+C +CSKLK DDSN +F  ARKIRDPK RLRAVW++ K+KM+CE
Sbjct: 61   VFHIGFLTKVKKILECVCFHCSKLKVDDSNPRFVRARKIRDPKARLRAVWDLAKTKMVCE 120

Query: 417  KGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGLNKVKRPHGGCGHRQPTIR 596
             G+D ++  D   +                             K K  HGGCG++QPTIR
Sbjct: 121  GGDDNDDGLDDREDAD--------------------------GKRKHAHGGCGYKQPTIR 154

Query: 597  KDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSEDLHDLGLNEEYARPDWMI 776
            KDGLKLY   K  +S + +  + RQ LT  +V  I K IS +D+ D+GL++E+ARP+WMI
Sbjct: 155  KDGLKLYAQTK-GNSGDDTATEGRQQLTANKVLQILKNISDQDIRDMGLSDEFARPEWMI 213

Query: 777  ITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLRRYESDGSPAHVVSEFEAL 956
            IT           SIQMDGTSRGEDDLTHKLSD+LKAN N+RR ES+G+P HVV EFE L
Sbjct: 214  ITVLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDVLKANANVRRCESEGAPVHVVQEFEQL 273

Query: 957  LQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 1136
            LQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG
Sbjct: 274  LQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 333

Query: 1137 DPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPSVHPGAKYVIRDTGERIDL 1316
            DPN+++D+VGVP+SIA NLT+PEIVTP+N+D LQ LV+NGP  HPGAKYVIRDTGERIDL
Sbjct: 334  DPNLALDQVGVPRSIARNLTYPEIVTPYNIDKLQALVRNGPLEHPGAKYVIRDTGERIDL 393

Query: 1317 KHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVT 1496
             +      + LQ G+KVERHIN+ D++IFNRQPSLHKMSMMGH+VRVMP+STFRLNLSVT
Sbjct: 394  SYRKRAGEIPLQYGYKVERHINDDDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVT 453

Query: 1497 SPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFT 1676
            +PYNADFDGDEMN+H+PQS+ET+AE+ EICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFT
Sbjct: 454  TPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFT 513

Query: 1677 KRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQILSMIIPKGINSDNLRHST 1856
             RDTFL+KD+VMNI+MWV DWDG IP P I+KP  +WTGKQIL+M+IPKGIN     HST
Sbjct: 514  LRDTFLTKDMVMNIVMWVPDWDGYIPPPAIIKPKAMWTGKQILAMVIPKGINCQTF-HST 572

Query: 1857 HPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIHVIMQELGPNRAKDFLNGC 2036
            HPD E T ISPGDT+V++E+GEL+CGI+CKKTVGTA  GL+H I+ E GP  AK+FL G 
Sbjct: 573  HPDREHTYISPGDTRVIVENGELICGIVCKKTVGTASGGLVHTIVNEQGPEAAKNFLTGT 632

Query: 2037 QAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVAEVIITAQQNTLECQPGMT 2216
            Q VVNYWLLQNGFSIGIGDTIAD++TM +IT  I  AK+RV E+I+TAQQ+ LE QPGMT
Sbjct: 633  QQVVNYWLLQNGFSIGIGDTIADRNTMATITNVIAQAKQRVQEIIMTAQQDKLEVQPGMT 692

Query: 2217 IRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQN 2396
            +RE+FE KVN+ LN ARD AG+ A+++L  DNNVKQMV+AGSKGSFINISQM+ACVGQQN
Sbjct: 693  LRETFEAKVNQTLNKARDDAGKMAQENLKIDNNVKQMVLAGSKGSFINISQMSACVGQQN 752

Query: 2397 VEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 2576
            VEGKRIP+GF++RTLPHF+KDDH+PESRGFVENSYLRGLTP EFFFHAMGGREGLIDTAV
Sbjct: 753  VEGKRIPYGFQYRTLPHFSKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAV 812

Query: 2577 KTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGEDGMDACFVESQNIDSLPLS 2756
            KTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI+Q  YGEDG+DACFVE Q + ++  S
Sbjct: 813  KTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQMVYGEDGLDACFVEKQKLATIGCS 872

Query: 2757 DDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHDEIVKEKIRAEY 2936
            ++ F +++                                       ++E+++ ++  E+
Sbjct: 873  EEQFVERF---------------KVDLANKKGFRAGTLNYNVLKAVENNEMLQNQLDQEF 917

Query: 2937 EQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKIIPSQRTKSDLQFVDVIDNV 3116
             +L+ DR LL+ +IF  G+++WPLPVN++RLI NAQQ F I P  R  SD+  + VID +
Sbjct: 918  ARLEEDRHLLREYIFKDGEDKWPLPVNLQRLITNAQQIFHIDP--RKPSDIHPLQVIDGI 975

Query: 3117 EELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVIDEFHLNQQALKWILGEIE 3296
              L  +L +V+G D+IS EAQ NAT LF+ LLRS  A KRV++E+HL  QA +WILGE+E
Sbjct: 976  SSLADRLLVVRGNDKISAEAQKNATCLFRALLRSTFAVKRVVEEYHLTSQAFEWILGEVE 1035

Query: 3297 LRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKN 3476
             RFQ ++V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKN
Sbjct: 1036 SRFQTAMVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKN 1095

Query: 3477 IKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEIWYEPDITTTEIESDREFV 3656
            IKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT RTEI+Y+PD   T IE D +FV
Sbjct: 1096 IKTPRLEVWLDAERSRNIELAKEVQVHLEHTTLQKVTARTEIFYDPDPRNTIIEEDADFV 1155

Query: 3657 ELYYAMEDKDS-ISGYQSPWVLRFELNHDVMLDKKLHMDIVGNKIQENFSKDIHAIWNDD 3833
            + YY +ED +S +    SPW+LR EL+  +M+DK+L++  V  +I E F  D+H I +DD
Sbjct: 1156 DTYYQLEDDNSPVVTRVSPWLLRIELDRGMMVDKRLNITEVVQRISEEFKSDLHVIGSDD 1215

Query: 3834 NADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNMLSNIGLRGIKGISRVYL 4013
            N++  +IRCR++ +    K    EE+  + EED FL+++E +MLS+I LRGI  I +VY+
Sbjct: 1216 NSEKLIIRCRVMMDENEEKGM--EEDEGRAEEDTFLRKLETSMLSSINLRGIPRIQKVYI 1273

Query: 4014 IDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHTRTYSNNCVEIMQVLGIE 4193
            ++   T   L+ +G      EW L+TDG NLQ+V+    VD  RTYSNN VEIM+VLGIE
Sbjct: 1274 VERKDTR--LNANGNFDTVTEWGLDTDGINLQQVMCQRGVDERRTYSNNTVEIMEVLGIE 1331

Query: 4194 ATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSF 4373
            ATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAITRHGINRAETGALMRCSF
Sbjct: 1332 ATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAITRHGINRAETGALMRCSF 1391

Query: 4374 EETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYLDPILLRT-------TAP 4532
            EETVEIL+EAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV LD  +L+T       T P
Sbjct: 1392 EETVEILLEAAAVGELDDCRGVAENIMLGQLAPLGTGEFDVMLDEDMLKTIPHDNRQTMP 1451

Query: 4533 AGDSSIVKAKEGYDYRRSGNMTPALG--------GMTPFTSARTPSHFAMTPM--YGAKT 4682
             G    V    G+     G MTP LG            F+   +PS    +PM   GA +
Sbjct: 1452 NGVPGDV---AGFTTPGPGYMTPNLGTPYDTRSPDWVDFSHPSSPSEPMFSPMGNTGAAS 1508

Query: 4683 PLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSP-YNTGSPSYGPTSPQYSP 4859
            P  +                     G    S     SY TSP Y+  SP+Y PTSP YSP
Sbjct: 1509 PSGASPWRGDLSPYAASPGYSPTSPGYSPSSP----SYITSPGYSPASPNYSPTSPSYSP 1564

Query: 4860 SSP--APTAFAHSPGGSSF 4910
            +SP  +PT+ ++SP   S+
Sbjct: 1565 TSPSYSPTSPSYSPTSPSY 1583


>gb|KFH65903.1| DNA-directed RNA polymerase II subunit A, variant [Mortierella
            verticillata NRRL 6337]
          Length = 1794

 Score = 1967 bits (5095), Expect = 0.0
 Identities = 1011/1632 (61%), Positives = 1231/1632 (75%), Gaps = 14/1632 (0%)
 Frame = +3

Query: 57   MSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCAEGMSECPGHFGHIELAKP 236
            MSVA IEH E +DEG  RPK GGL DPRMGTI+RNFKCQTC+EGM+ECPGHFGHIELAKP
Sbjct: 1    MSVAKIEHAELIDEGTKRPKIGGLHDPRMGTINRNFKCQTCSEGMAECPGHFGHIELAKP 60

Query: 237  VFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDPKRRLRAVWEICKSKMICE 416
            V+  GFL KVKKILEC+C +CSKLK DD+N+KF  AR+IRDPK RL+AVWE+ KSKM+CE
Sbjct: 61   VYLNGFLTKVKKILECVCYSCSKLKIDDNNSKFVRARRIRDPKVRLKAVWELAKSKMVCE 120

Query: 417  KGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGLNKVKRPHGGCGHRQPTIR 596
             G+D   D +   E  D+   NG    P P++ S              HGGCGHRQP  R
Sbjct: 121  GGDDI--DAEMQEEEVDE---NGM---PRPKKIS--------------HGGCGHRQPIFR 158

Query: 597  KDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSEDLHDLGLNEEYARPDWMI 776
            K+GL L +NFK   S++ S  + ++ LTP+  Y I K+IS ED+  +GL+ E+ARP+WMI
Sbjct: 159  KEGLGLSVNFKANASDD-SQPEGKRTLTPSDAYHILKRISDEDIEAMGLSPEFARPEWMI 217

Query: 777  ITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLRRYESDGSPAHVVSEFEAL 956
            +T           SIQMDG+S GEDDLTHKL  I+K N ++ R   DG+PAH++ + E L
Sbjct: 218  MTVLPIPPLAVRPSIQMDGSSTGEDDLTHKLFAIIKTNADVYRCAQDGTPAHLIQQHEQL 277

Query: 957  LQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 1136
            LQ+H ATYMDN++AGQP A  K+GRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG
Sbjct: 278  LQYHVATYMDNDIAGQPPAAHKNGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 337

Query: 1137 DPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPSVHPGAKYVIRDTGERIDL 1316
            DPN+S+DEVGVP+SIA  LT+PE+VTP+N+D LQ+LV+NGP+ HPGA YVIRD G+RIDL
Sbjct: 338  DPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNGPTEHPGAVYVIRDDGQRIDL 397

Query: 1317 KHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVT 1496
            +       V LQ GWKVERHIN+GD++IFNRQPSLHKMSMMGHK+RVMP+STFRLNLSVT
Sbjct: 398  RWNK--REVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVT 455

Query: 1497 SPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFT 1676
            SPYNADFDGDEMN+H+PQSVET+AEI EICMVP+QIVSPQSNKPVMGIVQDTLCG+RKFT
Sbjct: 456  SPYNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFT 515

Query: 1677 KRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQILSMIIPKGINSDNLRHST 1856
            KRD FL+K++VMN++MWV  W+G +PTP ILKP PLWTGKQ+LSMIIPKGIN     HST
Sbjct: 516  KRDCFLTKEMVMNLVMWVPGWEGFLPTPAILKPKPLWTGKQMLSMIIPKGINCI-CYHST 574

Query: 1857 HPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIHVIMQELGPNRAKDFLNGC 2036
            HPD E +DISPGDTKV++E+GEL+CGI+CKKTVGT+  GLIHVIM + GP  AK F NGC
Sbjct: 575  HPDNEESDISPGDTKVIVENGELICGIVCKKTVGTSGGGLIHVIMNQHGPEVAKTFFNGC 634

Query: 2037 QAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVAEVIITAQQNTLECQPGMT 2216
            Q VVNYWLLQ+GFSIGIGDT+AD+ T+ +IT  I++A   V ++II AQQ+ LEC+PGMT
Sbjct: 635  QTVVNYWLLQHGFSIGIGDTVADRSTVMTITSIISNATNNVNDLIIQAQQDKLECKPGMT 694

Query: 2217 IRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQN 2396
            +RE+FE+ VN+ LNTARD AG+ A++SL EDNNVKQMVI+GSKGSFIN+SQMTACVGQQN
Sbjct: 695  LRETFESLVNRALNTARDDAGKMAQQSLREDNNVKQMVISGSKGSFINVSQMTACVGQQN 754

Query: 2397 VEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 2576
            VEGKRIPFGFK+RTLPHFTKDDH+PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV
Sbjct: 755  VEGKRIPFGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 814

Query: 2577 KTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGEDGMDACFVESQNIDSLPLS 2756
            KTAETGYIQRRLVKALEDVMVKYDGTVRNSLG ++QFCYGEDGMDAC VE Q +D++ +S
Sbjct: 815  KTAETGYIQRRLVKALEDVMVKYDGTVRNSLGHVIQFCYGEDGMDACHVEKQPLDTVKMS 874

Query: 2757 DDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHDEIVKEKIRAEY 2936
            + AF+KKY                                        +  ++  +  E+
Sbjct: 875  NAAFEKKY-----RIDLTDKSKSFKNGTLDYNVFKQIAEADEEAAKRGEPDMQTLLEQEF 929

Query: 2937 EQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKIIPSQRTKSDLQFVDVIDNV 3116
            +QL  DR LL+ +IF +GDN WP+P NI+R I N++Q F +    +  SDL    +++++
Sbjct: 930  KQLDEDRHLLRNYIFTEGDNSWPMPTNIRRYIWNSKQMFHV--DHKRPSDLDPRHILESI 987

Query: 3117 EELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVIDEFHLNQQALKWILGEIE 3296
            + L  +L +V+G DRISVEAQ NATLLF++L+RS LA +RVI+E+HL ++A  W++GEI 
Sbjct: 988  KNLEKQLVVVRGTDRISVEAQDNATLLFRMLIRSTLAVRRVIEEYHLTREAFDWVVGEIG 1047

Query: 3297 LRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKN 3476
             RF  ++V+PGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA N
Sbjct: 1048 SRFAHAIVNPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATN 1107

Query: 3477 IKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEIWYEPDITTTEIESDREFV 3656
            IKTPS++++L     ++++RAK++Q  +EYT LK VT  TEI Y+PD   T IE D++FV
Sbjct: 1108 IKTPSLNVYLTPDCARNMERAKQVQVALEYTNLKKVTSSTEIHYDPDPENTNIEEDQDFV 1167

Query: 3657 ELYYAMEDKDSISGYQSPWVLRFELNHDVMLDKKLHMDIVGNKIQENFSKDIHAIWNDDN 3836
            + YYAM D D  +   SPW+LR ELN  +MLDKKL M  V NKI E+F +D+  I +DDN
Sbjct: 1168 QAYYAMPDDDLHANRTSPWLLRIELNRKMMLDKKLTMADVSNKISEDFQRDLMCICSDDN 1227

Query: 3837 ADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENNMLSNIGLRGIKGISRVYLI 4016
            A+  +IRCRIISE  +     D++   + EEDVFLK++E+++LS+IGLRGIK I+RVY++
Sbjct: 1228 AEKLIIRCRIISEEAA-----DKQTDVQEEEDVFLKKIESSLLSSIGLRGIKNIARVYMV 1282

Query: 4017 DSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDHTRTYSNNCVEIMQVLGIEA 4196
            +  K  IY+ + G    + EW LET G+NL+ V+  ++VD TRTYSNNC E+M VLGIEA
Sbjct: 1283 EKKK--IYIKNDGTFGSQMEWYLETSGSNLKAVMCEEDVDSTRTYSNNCGEVMSVLGIEA 1340

Query: 4197 TRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFE 4376
             R ALLKELRGVIEFDGSYVNYRHL+LLCDVMT RGHLMAITRHGINRAETGALMRCSFE
Sbjct: 1341 ARQALLKELRGVIEFDGSYVNYRHLSLLCDVMTHRGHLMAITRHGINRAETGALMRCSFE 1400

Query: 4377 ETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVYLDPILLRTTAPAGDSSIVK 4556
            ETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FD+ LD  +L T        ++ 
Sbjct: 1401 ETVEILMEAAAVGELDDCRGVAENIMLGQLAPLGTGEFDLMLDEKMLSTVVEGPRPGMMG 1460

Query: 4557 AKEGYDY-----RRSGNMTPALGGMTP----FTSARTPSHFAMTPMY--GAKTPLSSYDX 4703
               G          S  MTP   G +P    F+   +P     +PM   G+ +PL +   
Sbjct: 1461 MGMGMGMGLSSDNLSSQMTP-YDGRSPQYVDFSHPGSPMDAVFSPMVNSGSSSPLGASSW 1519

Query: 4704 XXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSP-YNTGSPSYGPTSPQYSPSSP--AP 4874
                             + G S S      Y TSP Y+  SPSY PTSP YSP+SP  +P
Sbjct: 1520 SDPSSPFGATSPGYSPASPGYSPSSP---MYATSPGYSPTSPSYSPTSPNYSPTSPSYSP 1576

Query: 4875 TAFAHSPGGSSF 4910
            T+ ++SP   S+
Sbjct: 1577 TSPSYSPTSPSY 1588


>gb|ORZ19705.1| RNA polymerase II [Absidia repens]
          Length = 1585

 Score = 1962 bits (5083), Expect = 0.0
 Identities = 1011/1638 (61%), Positives = 1213/1638 (74%), Gaps = 16/1638 (0%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            +RV  VQFGILSP+EIK MSVA IE PE  DEG  +P+  GLLDPRMGTIDRN+KCQTC 
Sbjct: 14   RRVDAVQFGILSPDEIKAMSVAKIEFPELYDEGSQKPRACGLLDPRMGTIDRNYKCQTCG 73

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            EGM+ECPGHFGHI+LAKPV+HIGFL KVKKILEC+C +CSKLK DD+N +F  ARKIRD 
Sbjct: 74   EGMAECPGHFGHIDLAKPVYHIGFLTKVKKILECVCFHCSKLKVDDTNPRFVRARKIRDK 133

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K R++AVWE+ K KM+CE G++ +N                              ED   
Sbjct: 134  KTRMKAVWELAKGKMVCEGGDNDDN----------------------------GLEDDLD 165

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
               K PHGGCG++QP IRKDGLKLY  FK   S++ SG D + +LT  +V  I K I+ +
Sbjct: 166  ESRKNPHGGCGNKQPLIRKDGLKLYALFKASGSDD-SGNDGKTLLTAGKVLQILKNITDQ 224

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            D+ D+GL+EEYARP+WMI T            + +   +RGEDDLTHKLSD+LKAN N+R
Sbjct: 225  DIRDMGLSEEYARPEWMITTI-----------LPVPLHNRGEDDLTHKLSDVLKANANVR 273

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            R ES+G+P HVV EFE LLQFH ATYMDN++AGQPQALQKSGRPLKSIRARLKGKEGRLR
Sbjct: 274  RCESEGAPVHVVQEFEQLLQFHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLR 333

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+S+DEVGVP+SIA NLT+PEIVT +N+D LQ LV+NGP 
Sbjct: 334  GNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYPEIVTSYNIDKLQALVRNGPL 393

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKYVIRD GERIDL++      + LQ G++VERHI +GD++IFNRQPSLHKMSMMG
Sbjct: 394  EHPGAKYVIRDNGERIDLRYRKRAGEIPLQLGYRVERHIVDGDVVIFNRQPSLHKMSMMG 453

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H++RVMP+STFRLNLSVTSPYNADFDGDEMN+H+PQS+ET+AEI EICMVPKQIVSPQSN
Sbjct: 454  HRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSPQSN 513

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTL GIRKFT RD FL KDLVMNI+MWV DWDG IP P ILKP P+WTGKQI
Sbjct: 514  KPVMGIVQDTLAGIRKFTMRDLFLEKDLVMNIVMWVPDWDGFIPPPAILKPKPMWTGKQI 573

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSM+IPKGIN     + +HPD E T ISPGD++V+IE+GEL+CGI+CKKTVGTA  GLIH
Sbjct: 574  LSMVIPKGINCQTF-YFSHPDDETTYISPGDSRVIIENGELMCGIVCKKTVGTAGGGLIH 632

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             I+ ELG   AK+FL G Q VVNYWLLQNGFSIGIGDTIADK TM +IT  I  AK+RV 
Sbjct: 633  TIVNELGSEAAKNFLTGTQQVVNYWLLQNGFSIGIGDTIADKPTMATITNIIAQAKQRVQ 692

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            E+I TAQQ+ LE QPGMT+RESFE KVN+ LN ARD AG+ A+ +L  DNNVKQMV+AGS
Sbjct: 693  EIINTAQQDKLEIQPGMTLRESFEAKVNQTLNKARDDAGKLAQTNLKIDNNVKQMVMAGS 752

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQNVEGKRIP+GFK RTLPHF+KDDH+PESRGFVENSYLRGLTP 
Sbjct: 753  KGSFINISQMSACVGQQNVEGKRIPYGFKLRTLPHFSKDDHSPESRGFVENSYLRGLTPT 812

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI++FCYGED
Sbjct: 813  EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFCYGED 872

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            GMD C VE Q +  L  SD  F+++Y                                  
Sbjct: 873  GMDGCSVEKQKLVPLRSSDKQFEERY----------------RVDLAEGGFRKGALGYDV 916

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  +E  ++ +  E+ QL+ DR +++ FIF +GD++WPLPVN++RLI NAQQ F I 
Sbjct: 917  LKDIDGNETAQQYLDQEFLQLREDRDIMRRFIFKQGDDKWPLPVNLQRLITNAQQIFHID 976

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
            P  R  SD+  + ++D +  L  +L +V+G D+IS E Q NATLLF++LLRS  A KRV+
Sbjct: 977  P--RKASDVHPLQIVDGISSLAERLVVVRGTDKISAETQRNATLLFQMLLRSTFAVKRVV 1034

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +EFHL+ QA +W+LGE+E RF  S+V+PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1035 EEFHLSSQAFEWVLGEVESRFLTSVVAPGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSK 1094

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            NVTLGVPRLKEIINVAKNIKTP + ++L  +  ++I+ AKE+Q  +E+TTL+ VT  +EI
Sbjct: 1095 NVTLGVPRLKEIINVAKNIKTPRLEVWLDAERSRNIELAKEVQVHLEHTTLQKVTSASEI 1154

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDS-ISGYQSPWVLRFELNHDVMLDKKLHMDIVG 3779
            +Y+PD  +T IE D EFV+ YY +ED +S +    SPW+LR ELN  +M+DK+L++  V 
Sbjct: 1155 YYDPDPRSTIIEEDAEFVDTYYQLEDDNSPVVTRVSPWLLRIELNRGMMIDKRLNITEVV 1214

Query: 3780 NKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVENN 3959
             KI + F  D+H I +D+N++  +IRCR++S+    KD  DE+   + EED FL+++E++
Sbjct: 1215 QKISDEFKNDLHVIGSDENSEKLIIRCRVMSDESEEKDMDDEDT--RTEEDTFLRKLESS 1272

Query: 3960 MLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVDH 4139
            MLS+I LRGI  I +VY+++   T   L+  G  ++  EW L+TDG NLQ+V+    VD 
Sbjct: 1273 MLSSINLRGIPRIQKVYIVERKDT--ILNSQGKFEQTTEWGLDTDGINLQQVMCQHGVDE 1330

Query: 4140 TRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMAI 4319
             RTYSNN  EIM+VLGIEATR ALLKELR VIEFDGSYVNYRHLALLCDVMT+RGHLMAI
Sbjct: 1331 RRTYSNNTTEIMEVLGIEATRKALLKELRNVIEFDGSYVNYRHLALLCDVMTNRGHLMAI 1390

Query: 4320 TRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDVY 4499
            TRHGINRAETGALMRCSFEETVEILMEAAAVGE+DDCRGVAENIMLGQ+APLGTG+FDV 
Sbjct: 1391 TRHGINRAETGALMRCSFEETVEILMEAAAVGELDDCRGVAENIMLGQMAPLGTGEFDVI 1450

Query: 4500 LDPILLRTTAPAGDSSIVKAKEGYDYRRSGNMTPALGGMTP---------------FTSA 4634
            LD  +L+T        ++    G      G  TP  G MTP               F++ 
Sbjct: 1451 LDEEMLKTVPENQRHHLM--PNGVPGDVPGFATPGPGFMTPSMATPYDTRSPDWVDFSAP 1508

Query: 4635 RTPSHFAMTPMYGAKTPLSSYDXXXXXXXXXXXXXXXVLEAGGKSVSVGGIYSYQTSPYN 4814
             TPS    +PM  +    ++                          +  G YS  +  Y+
Sbjct: 1509 STPSEPMFSPMGNSGAVGATIGASPWRSDLSPYASSPGYSPSSPFAASPG-YSPSSPSYS 1567

Query: 4815 TGSPSYGPTSPQYSPSSP 4868
              SPSY P+SP YSPSSP
Sbjct: 1568 PSSPSYSPSSPSYSPSSP 1585


>ref|XP_007872781.1| DNA-directed RNA polymerase II subunit rpb1 [Pneumocystis murina
            B123]
 gb|EMR10721.1| DNA-directed RNA polymerase II subunit rpb1 [Pneumocystis murina
            B123]
          Length = 1666

 Score = 1939 bits (5024), Expect = 0.0
 Identities = 1012/1687 (59%), Positives = 1230/1687 (72%), Gaps = 51/1687 (3%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            ++V+ VQFGILSPEEI+ MSVA IE+PET+DE GHRP+ GGLLDPR+GTIDRNF+CQTC 
Sbjct: 15   RQVEEVQFGILSPEEIRAMSVAKIEYPETMDESGHRPRIGGLLDPRLGTIDRNFRCQTCG 74

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            E M+ECPGHFGHIELAKPVFHIGFL K+KKILEC+C+NC KLK D+SN KF  +++ RDP
Sbjct: 75   ESMAECPGHFGHIELAKPVFHIGFLVKIKKILECVCLNCGKLKADESNPKFVESQRYRDP 134

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K RL AVW +CK+KMICE  + P ND                              D+G+
Sbjct: 135  KSRLIAVWNVCKTKMICEI-DPPVND------------------------------DYGV 163

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
              +   HGGCG+ QP IRKDGLKL+  +K +  + +S    R++LTP +VY++FK ISS 
Sbjct: 164  KSIIG-HGGCGNPQPIIRKDGLKLWATYK-KSKDSESDLPDRRLLTPLEVYTVFKHISSV 221

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            DL  +GLNEEYARPDWMIIT           SI +DG++RGEDDLTHKLSDI+KAN N+R
Sbjct: 222  DLEKMGLNEEYARPDWMIITVLPVPPPSVRPSISVDGSNRGEDDLTHKLSDIIKANANVR 281

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            RYE +G+PAHVVSE+E LLQFH ATYMDN++AGQPQALQK+GRPLKSIRARLKGKEGRLR
Sbjct: 282  RYEQEGAPAHVVSEYEQLLQFHVATYMDNDIAGQPQALQKTGRPLKSIRARLKGKEGRLR 341

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+S+DE+GVP+SIA  LT+PE VTP+N+  LQELV+NGP+
Sbjct: 342  GNLMGKRVDFSARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNIHKLQELVRNGPN 401

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKY+IRDTGERIDL++      + LQ GW+VERHI +GD++IFNRQPSLHKMSMMG
Sbjct: 402  EHPGAKYIIRDTGERIDLRYHKRAGDIPLQYGWRVERHITDGDVVIFNRQPSLHKMSMMG 461

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+V+VMP+STFR+NLSVT PYNADFDGDEMN+H+PQS ET+AEI EICMVPKQIVSPQSN
Sbjct: 462  HRVKVMPYSTFRINLSVTPPYNADFDGDEMNLHVPQSEETRAEIIEICMVPKQIVSPQSN 521

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTL G+RK T+RD FLS+D VMNIL+WV +WDG +P+P I+KP PLWTGKQI
Sbjct: 522  KPVMGIVQDTLAGVRKLTRRDNFLSRDQVMNILLWVPEWDGNMPSPAIIKPKPLWTGKQI 581

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSM+IPKGIN          D + T ++P D  +++EDGE++ GI+ KKTVG +Q GL+H
Sbjct: 582  LSMVIPKGIN------LIRDDEKQTPMTPDDKGMMLEDGEIIYGIVDKKTVGASQGGLVH 635

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             IM+E GP   + F NG Q VVNYWLL NGFSIGIGDTIAD DTM  IT TI  AK +V 
Sbjct: 636  TIMREKGPEVCRVFFNGIQMVVNYWLLHNGFSIGIGDTIADADTMRDITNTIAEAKAKVQ 695

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            E+I+ AQQN L+ +PGMT+RESFE+KV++ LN ARD+AGRSAE SL E NNVKQMV AGS
Sbjct: 696  EIILDAQQNRLQVEPGMTLRESFESKVSRALNQARDTAGRSAEMSLKESNNVKQMVTAGS 755

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQ VEGKRIP+GFK RTLPHFTKDD++PES GF+ENSYLRGLTPQ
Sbjct: 756  KGSFINISQMSACVGQQIVEGKRIPYGFKHRTLPHFTKDDYSPESGGFIENSYLRGLTPQ 815

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAM GREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI+Q  YGED
Sbjct: 816  EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQLVYGED 875

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            G+D   VE QN+DSL LS++ FD++Y                                  
Sbjct: 876  GLDGISVEYQNLDSLRLSNEEFDRRY----------------RVDVMDPEKTIFPQYLET 919

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  D  ++  +  EY QL  DR LL+ FIF  GD R PLPVNI+R+I+NAQQ F I 
Sbjct: 920  GNEIDGDMAIQNLLDQEYNQLCEDRELLRNFIFKDGDGRRPLPVNIQRIIRNAQQIFHI- 978

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
              +R  SDL   D+I  V E + KL IV+G D+ + EAQ NATLLF+ILLRS LAS+RVI
Sbjct: 979  -DKRKASDLSPRDIILGVNETIKKLTIVRGNDKFTKEAQENATLLFQILLRSRLASRRVI 1037

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +E+HLN+ A +W+LGEIE RF  S+ +PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1038 EEYHLNKIAFEWVLGEIETRFAHSIANPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSK 1097

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            ++TLGVPRLKEI+NVAK IKTPS+ ++L  +  +D++ AK++Q  IE+TTL+TVT  TEI
Sbjct: 1098 SITLGVPRLKEILNVAKTIKTPSLTVYLMPEVSRDMESAKQVQTAIEHTTLRTVTSVTEI 1157

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGY--QSPWVLRFELNHDVMLDKKLHMDIV 3776
            +Y+PD   T IE DR FVE ++A+ D+D  +    QS W+LR EL+   MLDKKL M  V
Sbjct: 1158 FYDPDPRQTVIEEDRAFVEAFFAIPDEDVEANLHRQSAWLLRLELDRAKMLDKKLSMSDV 1217

Query: 3777 GNKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVEN 3956
              KI E+F KD+  IW++DNAD  VIRCR+I +   + D  D++N   +EED+ LKR+E+
Sbjct: 1218 AAKITESFHKDLFVIWSEDNADKLVIRCRVIKDDEKSFD--DDDN--LVEEDMLLKRIES 1273

Query: 3957 NMLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVD 4136
            +ML +I LRG+  ISRV++++ +KT +Y  ++G   +  EW LETDG NL +V+  +NVD
Sbjct: 1274 HMLESISLRGVPNISRVFMME-HKT-VYQKENGEFARGQEWVLETDGINLAKVMAVENVD 1331

Query: 4137 HTRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMA 4316
              RTYSN+ VEI+QVLGIEATRAALLKELR VIEFDGSYVNYRHL+LL D MTSRGHLMA
Sbjct: 1332 PQRTYSNSFVEILQVLGIEATRAALLKELRNVIEFDGSYVNYRHLSLLADTMTSRGHLMA 1391

Query: 4317 ITRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDV 4496
            ITRHGINRAETG LMRCSFEETVEILMEAAAVGE+DDCRG++ENIMLGQ+APLGTG+FDV
Sbjct: 1392 ITRHGINRAETGVLMRCSFEETVEILMEAAAVGEMDDCRGISENIMLGQLAPLGTGEFDV 1451

Query: 4497 YLDPILLR-------------------------------TTAPAGDSSIVKAKEGYDYR- 4580
             LD  +L                                + +P  DS  + + +G  +  
Sbjct: 1452 MLDEDMLNEVVIDRQMFRGISSTALGKTPLQDDQATPYDSRSPVSDSGYIGSSDGAAFSP 1511

Query: 4581 --RSGNMTPALGGMTPF----------TSARTPSHFAMTPMYGAKTPLSSYDXXXXXXXX 4724
              +SG+ TP  GG T +           + ++P +    P  G      +Y         
Sbjct: 1512 LVQSGSETP--GGFTEYGGGFGVSPYGATLQSPGYQPFFPFSGTSPVSPTYSPTSIFSPT 1569

Query: 4725 XXXXXXXVLEAGGKSVSVGGI---YSYQTSPYNTGSPSYGPTSPQYSPSSPA--PTAFAH 4889
                          S     I   YS  +  Y+  SP Y PTSP YSP+SPA  PT+ A+
Sbjct: 1570 SPQILRMSPNFSPTSPMCSPISPAYSPTSPAYSPTSPVYSPTSPVYSPTSPAYSPTSPAY 1629

Query: 4890 SPGGSSF 4910
            SP   ++
Sbjct: 1630 SPTSPAY 1636


>ref|XP_018227131.1| DNA-directed RNA polymerase II subunit rpb1 [Pneumocystis carinii
            B80]
 gb|KTW30340.1| DNA-directed RNA polymerase II subunit rpb1 [Pneumocystis carinii
            B80]
          Length = 1743

 Score = 1938 bits (5020), Expect = 0.0
 Identities = 1011/1680 (60%), Positives = 1226/1680 (72%), Gaps = 44/1680 (2%)
 Frame = +3

Query: 3    KRVKYVQFGILSPEEIKQMSVALIEHPETLDEGGHRPKQGGLLDPRMGTIDRNFKCQTCA 182
            ++V+ VQFGILSPEEI+ MSVA IE+PET+DE GHRP+ GGLLDPR+GTIDRNF+CQTC 
Sbjct: 15   RQVEEVQFGILSPEEIRAMSVAKIEYPETMDESGHRPRIGGLLDPRLGTIDRNFRCQTCG 74

Query: 183  EGMSECPGHFGHIELAKPVFHIGFLPKVKKILECICINCSKLKTDDSNAKFSVARKIRDP 362
            E M+ECPGHFGHIELAKPVFHIGFL K+KKILEC+C+NC KLK D+SN KF  +++ RDP
Sbjct: 75   ESMAECPGHFGHIELAKPVFHIGFLVKIKKILECVCLNCGKLKADESNPKFIESQRYRDP 134

Query: 363  KRRLRAVWEICKSKMICEKGEDPENDPDKASEYGDDYVPNGQSSKPIPQRTSTAAEDFGL 542
            K RL AVW +CK+KMICE       DP    +YG   +                      
Sbjct: 135  KSRLIAVWNVCKTKMICEI------DPPINDDYGAKTIIG-------------------- 168

Query: 543  NKVKRPHGGCGHRQPTIRKDGLKLYMNFKIRDSEEQSGQDTRQILTPAQVYSIFKKISSE 722
                  HGGCG+ QP IRKDGLKL+  +K +  + +S    R++LTP +VY++FK ISS 
Sbjct: 169  ------HGGCGNPQPIIRKDGLKLWATYK-KSKDSESDLPDRRLLTPLEVYTVFKHISSV 221

Query: 723  DLHDLGLNEEYARPDWMIITXXXXXXXXXXXSIQMDGTSRGEDDLTHKLSDILKANQNLR 902
            DL  +GLNEEYARPDWMIIT           SI +DG++RGEDDLTHKLSDI+KAN N+R
Sbjct: 222  DLEKMGLNEEYARPDWMIITVLPVPPPSVRPSISVDGSNRGEDDLTHKLSDIIKANANVR 281

Query: 903  RYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLR 1082
            RYE +G+PAH+VSE+E LLQFH ATYMDN++AGQPQALQK+GRPLKSIRARLKGKEGRLR
Sbjct: 282  RYEQEGAPAHIVSEYEQLLQFHVATYMDNDIAGQPQALQKTGRPLKSIRARLKGKEGRLR 341

Query: 1083 GNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPS 1262
            GNLMGKRVDFSARTVITGDPN+S+DE+GVP+SIA  LT+PE VTP+N+  LQELV+NGP+
Sbjct: 342  GNLMGKRVDFSARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNIHKLQELVRNGPN 401

Query: 1263 VHPGAKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDIIIFNRQPSLHKMSMMG 1442
             HPGAKY+IRDTGERIDL++      + LQ GW+VERHI +GD++IFNRQPSLHKMSMMG
Sbjct: 402  EHPGAKYIIRDTGERIDLRYHKRAGDIPLQYGWRVERHITDGDVVIFNRQPSLHKMSMMG 461

Query: 1443 HKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHIPQSVETKAEIREICMVPKQIVSPQSN 1622
            H+VRVMP+STFR+NLSVT PYNADFDGDEMN+H+PQS ET+AEI EICMVPKQIVSPQSN
Sbjct: 462  HRVRVMPYSTFRINLSVTPPYNADFDGDEMNLHVPQSEETRAEIIEICMVPKQIVSPQSN 521

Query: 1623 KPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWVKDWDGKIPTPCILKPIPLWTGKQI 1802
            KPVMGIVQDTL G+RK T+RD FLS+D VMNIL+WV +WDG +PTP I+KP PLWTGKQI
Sbjct: 522  KPVMGIVQDTLAGVRKLTRRDNFLSRDQVMNILLWVPEWDGNMPTPAIIKPKPLWTGKQI 581

Query: 1803 LSMIIPKGINSDNLRHSTHPDGEFTDISPGDTKVLIEDGELLCGIICKKTVGTAQQGLIH 1982
            LSM+IPKGIN          D + T ++P D  +++EDGE++ GI+ KKTVG +Q GL+H
Sbjct: 582  LSMVIPKGIN------LIRDDEKQTPMTPDDKGMMLEDGEIIYGIVDKKTVGASQGGLVH 635

Query: 1983 VIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMESITQTINSAKERVA 2162
             IM+E GP   + F NG Q VVNYWLL NGFSIGIGDTIAD DTM  IT TI  AK +V 
Sbjct: 636  TIMREKGPEVCRMFFNGIQMVVNYWLLHNGFSIGIGDTIADADTMRDITNTIAEAKAKVQ 695

Query: 2163 EVIITAQQNTLECQPGMTIRESFENKVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGS 2342
            E+I+ AQQN L+ +PGMT+RESFE+KV++ LN ARD+AGRSAE SL E NNVKQMV AGS
Sbjct: 696  EIILDAQQNRLQVEPGMTLRESFESKVSRALNQARDTAGRSAEMSLKESNNVKQMVTAGS 755

Query: 2343 KGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHTPESRGFVENSYLRGLTPQ 2522
            KGSFINISQM+ACVGQQ VEGKRIP+GFK RTLPHFTKDD++PES GF+ENSYLRGLTPQ
Sbjct: 756  KGSFINISQMSACVGQQIVEGKRIPYGFKHRTLPHFTKDDYSPESGGFIENSYLRGLTPQ 815

Query: 2523 EFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGED 2702
            EFFFHAM GREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDI+Q  YGED
Sbjct: 816  EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQLVYGED 875

Query: 2703 GMDACFVESQNIDSLPLSDDAFDKKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2882
            G+D   VE QN+DSL LS++ FD++Y                                  
Sbjct: 876  GLDGISVEYQNLDSLRLSNEEFDRRY----------------RVDVMDPKKTISPQYLET 919

Query: 2883 XXXXSHDEIVKEKIRAEYEQLKTDRFLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKII 3062
                  D  ++  +  EY QL  DR LL+ FIF  GD R PLPVNI+R+I+NAQQ F I 
Sbjct: 920  GNEIEGDMAIQNLLDQEYNQLCEDRELLRNFIFKDGDGRRPLPVNIQRIIRNAQQIFHI- 978

Query: 3063 PSQRTKSDLQFVDVIDNVEELLSKLEIVKGKDRISVEAQSNATLLFKILLRSWLASKRVI 3242
              +R  SDL   D+I  V E + KL IV+G D+ + EAQ NATLLF+ILLRS LAS+RVI
Sbjct: 979  -DKRKASDLNPRDIILGVNETIKKLTIVRGNDKFTKEAQENATLLFQILLRSRLASRRVI 1037

Query: 3243 DEFHLNQQALKWILGEIELRFQRSLVSPGEMVGTVAAQSIGEPATQMTLNTFHYAGVSSK 3422
            +E+ LN+ A +W+LGEIE RF  S+ +PGEMVGT+AAQSIGEPATQMTLNTFHYAGVSSK
Sbjct: 1038 EEYRLNKIAFEWVLGEIETRFAHSIANPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSK 1097

Query: 3423 NVTLGVPRLKEIINVAKNIKTPSVHIFLKEQYKKDIDRAKEIQATIEYTTLKTVTQRTEI 3602
            ++TLGVPRLKEI+NVAK IKTPS+ ++L  +  +D++ AK++Q  IE+TTL+TVT  TEI
Sbjct: 1098 SITLGVPRLKEILNVAKTIKTPSLTVYLIPEVSRDMESAKQVQTAIEHTTLRTVTSVTEI 1157

Query: 3603 WYEPDITTTEIESDREFVELYYAMEDKDSISGY--QSPWVLRFELNHDVMLDKKLHMDIV 3776
            +Y+PD   T IE DR FVE ++A+ D+D  +    QS W+LR EL+   MLDKKL M  V
Sbjct: 1158 FYDPDPQQTVIEEDRAFVEAFFAIPDEDVEANLHRQSAWLLRLELDRAKMLDKKLSMSDV 1217

Query: 3777 GNKIQENFSKDIHAIWNDDNADLKVIRCRIISEPGSTKDHIDEENGHKIEEDVFLKRVEN 3956
              KI E+F KD+  IW++DNAD  VIRCR+I +   + D  D++N   +EED+ LKR+E+
Sbjct: 1218 AAKITESFHKDLFVIWSEDNADKLVIRCRVIKDDEKSFD--DDDN--LVEEDMLLKRIES 1273

Query: 3957 NMLSNIGLRGIKGISRVYLIDSNKTHIYLDDSGLIQKENEWTLETDGTNLQEVLNADNVD 4136
            +ML +I LRG+  ISRV++++ +KT +Y  ++G   +  EW LETDG NL +V+  +NVD
Sbjct: 1274 HMLESISLRGVPNISRVFMME-HKT-VYQKENGEFARGEEWVLETDGINLAKVMAVENVD 1331

Query: 4137 HTRTYSNNCVEIMQVLGIEATRAALLKELRGVIEFDGSYVNYRHLALLCDVMTSRGHLMA 4316
              RTYSN+ VEI+QVLGIEATRAALLKELR VIEFDGSYVNYRHL+LL D MTSRGHLMA
Sbjct: 1332 PRRTYSNSFVEILQVLGIEATRAALLKELRNVIEFDGSYVNYRHLSLLADTMTSRGHLMA 1391

Query: 4317 ITRHGINRAETGALMRCSFEETVEILMEAAAVGEVDDCRGVAENIMLGQVAPLGTGDFDV 4496
            ITRHGINRAETG LMRCSFEETVEILMEAAAVGE+DDCRG++ENIMLGQ+APLGTG+FDV
Sbjct: 1392 ITRHGINRAETGVLMRCSFEETVEILMEAAAVGEMDDCRGISENIMLGQLAPLGTGEFDV 1451

Query: 4497 YLDPILLR-------------------------------TTAPAGDSSIVKAKEGYDYR- 4580
             LD  +L                                + +P  DS  + + +G  +  
Sbjct: 1452 MLDEDMLNEVVVDRQMFRGISSAALGKTLLQEDQATPYDSRSPVSDSGYIGSSDGAAFSP 1511

Query: 4581 --RSGNMTPALGGMTPFTSARTPSHFAMT---PMYGAKTPLSS---YDXXXXXXXXXXXX 4736
              +SG+ TP  GG T +      S +  T   P Y   +P S                  
Sbjct: 1512 LVQSGSETP--GGFTEYGGGFGVSPYGATLQSPGYQPFSPFSGTSPVSPNYLPTSVFSPT 1569

Query: 4737 XXXVLEAGGKSVSVGGIYSYQTSPYNTGSPSYGPTSPQYSPSSPA--PTAFAHSPGGSSF 4910
               +L           + S  +  Y+  SP+Y PTSP YSP+SPA  PT+ A+SP   ++
Sbjct: 1570 SPQILRMSPNFSPTSPMCSPISPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1629