BLASTX nr result
ID: Ophiopogon26_contig00038246
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00038246
(591 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD63165.1| F5M15.26, related [Asparagus officinalis] 72 1e-11
gb|ABD63162.1| RNase H family protein [Asparagus officinalis] 62 1e-10
gb|ONK72915.1| uncharacterized protein A4U43_C04F24880 [Asparagu... 40 9e-10
gb|ABD63088.1| hypothetical protein 17.t00015 [Asparagus officin... 48 8e-09
gb|ABD63139.1| Reverse transcriptase family protein [Asparagus o... 65 1e-08
gb|ABD63192.1| Reverse transcriptase family protein [Asparagus o... 41 6e-07
>gb|ABD63165.1| F5M15.26, related [Asparagus officinalis]
Length = 320
Score = 72.4 bits (176), Expect = 1e-11
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +1
Query: 1 PWSTMDACTSLHAPLKSSFATFEEFGDAQEAFFKVPTKLKGLRPILFGKVKPGNATYISS 180
PW + SL P++SSFA+ EE DAQ+AFFKVP+K KG +PI FGKVKP SS
Sbjct: 231 PWHILCTEASLTLPIQSSFASDEEAEDAQKAFFKVPSKKKGQKPICFGKVKPEQLKRASS 290
Query: 181 DDNSEPPQLSHYGLKQCRMIEKIG 252
+++ PQ ++ +++++G
Sbjct: 291 EEDDGVPQFHYHEPNSIYLMKRMG 314
>gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
Length = 1189
Score = 62.4 bits (150), Expect(2) = 1e-10
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = +3
Query: 351 TRRGLWYVTTPLTTDGEAKECAFHDHSSGTSSWESNVSVGAIFKDLSVNMASVDHPKKED 530
T RG+ YVT P ++ E HDHSSG SS+ES+VS+G FK+L+VNM S H ++
Sbjct: 16 TGRGMGYVTPPPASENEISNYLRHDHSSGISSYESDVSIGPFFKNLTVNMVSTSHLDEDA 75
Query: 531 KD 536
D
Sbjct: 76 GD 77
Score = 31.2 bits (69), Expect(2) = 1e-10
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 538 NDQELVQSTNDP*IKRLN 591
+D+EL++STNDP IKRLN
Sbjct: 77 DDEELMESTNDPWIKRLN 94
>gb|ONK72915.1| uncharacterized protein A4U43_C04F24880 [Asparagus officinalis]
Length = 1510
Score = 39.7 bits (91), Expect(3) = 9e-10
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +1
Query: 31 LHAPLKSSFATFEEFGDAQEAFFKVPTKLKGLRPILFGKVK--PGNATYISSDDNSEPP- 201
L+ P++SS+ T E + +P K++G + +++GK K P ++S D++ + P
Sbjct: 1100 LYMPIRSSYVTKEHLQHSFGTTMVIPNKVRGAKEVIYGKGKSSPLPDHFLSEDEDDDKPG 1159
Query: 202 -QLSHYGLKQCRMIEKIG 252
LS Y + +++EK G
Sbjct: 1160 RHLSKYSPEARKLMEKQG 1177
Score = 39.7 bits (91), Expect(3) = 9e-10
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 426 HSSGTSSWESNVSVGAIFKDLSVNMASVDHPKKEDKDQ*P 545
+S S W+S+ S+G +FK L NMA+ D ED DQ P
Sbjct: 1241 YSPDASEWDSDTSLGEVFKTLMSNMATADPSTMEDDDQMP 1280
Score = 30.8 bits (68), Expect(3) = 9e-10
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 254 DFGSQQGLSFGKGRRALFRS-FVPKGKAHDYYHNPQGV 364
DF +GL F +G R ++ +VPKGK DYY +G+
Sbjct: 1179 DFTLGEGLYFDRGPRNPAKAVYVPKGKPEDYYKYGRGL 1216
>gb|ABD63088.1| hypothetical protein 17.t00015 [Asparagus officinalis]
Length = 125
Score = 48.1 bits (113), Expect(2) = 8e-09
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +3
Query: 351 TRRGLWYVTTPLTTDGEA---KECAFHDHSSGTSSWESNVSVGAIFKDLSVNMASVDHPK 521
T RGL Y + PL EA E +F + SS ++ W+S+VS GA+FK+L +NM S +
Sbjct: 45 THRGLGYESPPLIWCFEATEESEGSFTNSSSESNYWDSDVSTGAVFKELMINMTSAQPIE 104
Query: 522 KEDKDQ*P 545
++ +Q P
Sbjct: 105 TQEDNQLP 112
Score = 39.7 bits (91), Expect(2) = 8e-09
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2
Query: 254 DFGSQQGLSFGKGRRALFRS-FVPKGKAHDYYH 349
DF ++GL+FGKGR+ + +VP+GK DYYH
Sbjct: 11 DFTRKEGLNFGKGRKIPIKHVYVPEGKPEDYYH 43
>gb|ABD63139.1| Reverse transcriptase family protein [Asparagus officinalis]
Length = 1181
Score = 64.7 bits (156), Expect = 1e-08
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 7/203 (3%)
Frame = +1
Query: 4 WSTMDACTSLHAPLKSSFATFEEFGDAQEAFFKVPTKLKGLRPILFGKVKPGNATYISSD 183
W + L P+KSSF + EE DAQ+AF+KVP+K KG + I FG+VKP SS+
Sbjct: 402 WHALCTEACLTMPIKSSFTSNEEVEDAQKAFYKVPSKRKGQKLIQFGRVKPEQLKRGSSE 461
Query: 184 DNSEPPQLSHYGLKQCRMIEKIG*LW-QSAGLELRKGKTCIISFFRS*REST*LLPQPAG 360
++ PQ ++ ++++++G + + GL KG+ + + PQ
Sbjct: 462 EDDGVPQFHYHEPNSIQLMKRMGYNFNEKRGLNFGKGRRTPVRMSLAPEGK----PQDYY 517
Query: 361 GCGMLPLHLRPTVKPRSARFMTILPEHPPGSRMLASARSSRTFQ*IWHPLTIQKRKIK-- 534
L T L ++ S ++S S + + LT+
Sbjct: 518 HKTRSGLGYVTTPSASEDEISNYLGQN--HSSRISSCESDVSVGLFFKSLTVNMTSTSHP 575
Query: 535 ----TNDQELVQSTNDP*IKRLN 591
D+EL++ T+DP IKRLN
Sbjct: 576 DEDAGGDEELIEFTDDPWIKRLN 598
>gb|ABD63192.1| Reverse transcriptase family protein [Asparagus officinalis]
Length = 1146
Score = 40.8 bits (94), Expect(2) = 6e-07
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 324 KGKHMTTTTTRRGLWYVTTP-----LTTDGEAKECAFHDHSSGTSSWESNVSVGAIFKDL 488
KGK RRGL Y ++ + ++ E + S +S W+S+ S+G FK L
Sbjct: 340 KGKPDDYYKFRRGLGYESSSEDEYCWLINNQSSEQYKDGYPSDSSEWDSDTSLGEAFKAL 399
Query: 489 SVNMASVDHPKKEDKDQ*P 545
VNMA+ D E+ DQ P
Sbjct: 400 MVNMATADPSTMENDDQMP 418
Score = 40.4 bits (93), Expect(2) = 6e-07
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 28 SLHAPLKSSFATFEEFGDAQEAFFKVPTKLKGLRPILFGKVK--PGNATYISSDDNSEPP 201
+L+APL+SS+ T + + +PTK+ G R +++GK + P ++ D+N + P
Sbjct: 236 NLYAPLRSSYITKKRLQHSFGTTLVIPTKIGGQREVVYGKGEGFPLPDHFLREDENDDKP 295
Query: 202 --QLSHYGLKQCRMIEKIG 252
LS Y + +++EK G
Sbjct: 296 GRHLSKYSPEARKLMEKQG 314