BLASTX nr result
ID: Ophiopogon26_contig00037862
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00037862
(540 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCH50976.1| T4.15 [Malus x robusta] 52 3e-14
gb|ONM04508.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 53 6e-14
gb|AQK63292.1| hypothetical protein ZEAMMB73_Zm00001d013388 [Zea... 52 2e-13
gb|AQK78972.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 46 3e-12
gb|ONM33417.1| Reverse transcriptase [Zea mays] 58 3e-09
gb|AQK68857.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 57 2e-06
>emb|CCH50976.1| T4.15 [Malus x robusta]
Length = 986
Score = 52.0 bits (123), Expect(3) = 3e-14
Identities = 28/59 (47%), Positives = 35/59 (59%)
Frame = +1
Query: 196 NDITIENSMCLGNMGFVWLT*SCSIKL*YAIKMID*WRIGTLISIYKNKGDVQSCSSYR 372
+DI IE LG G WLT ++ KM + WR TL+ IYKNKGDVQ+C +YR
Sbjct: 581 DDIPIEVWKVLGETGITWLT-DLFNRILKTKKMPNEWRTSTLVPIYKNKGDVQNCMNYR 638
Score = 37.0 bits (84), Expect(3) = 3e-14
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +2
Query: 449 FMAGKPGMETIFLLRLSMERYREKRRNLYM 538
FM G+ ME I+LLR MERYR+ +++L+M
Sbjct: 671 FMPGRSTMEAIYLLRRLMERYRDGKKDLHM 700
Score = 36.2 bits (82), Expect(3) = 3e-14
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +3
Query: 366 LSYTMKHWERVIEQ*LRKEIFVLENQF 446
+S+TMK WERVIE LR+E V +NQF
Sbjct: 643 MSHTMKLWERVIEHRLRQETRVSDNQF 669
>gb|ONM04508.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 834
Score = 52.8 bits (125), Expect(3) = 6e-14
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = +1
Query: 202 ITIENSMCLGNMGFVWLT*SCSIKL*YAI----KMID*WRIGTLISIYKNKGDVQSCSSY 369
I IE CLG++ VWLT KL I +M D WR TL+ I+KNKGDVQSC++Y
Sbjct: 538 IPIEVWRCLGDIAIVWLT-----KLFNTIFRTNRMPDEWRRTTLVPIFKNKGDVQSCTNY 592
Query: 370 R 372
R
Sbjct: 593 R 593
Score = 38.9 bits (89), Expect(3) = 6e-14
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = +2
Query: 449 FMAGKPGMETIFLLRLSMERYREKRRNLYM 538
FM G+ ME IFLLR MER+RE++++L+M
Sbjct: 626 FMPGRSTMEAIFLLRQLMERFREQKKDLHM 655
Score = 32.7 bits (73), Expect(3) = 6e-14
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 366 LSYTMKHWERVIEQ*LRKEIFVLENQ 443
+S+TMK WERVIE+ LRK + +NQ
Sbjct: 598 MSHTMKLWERVIERRLRKMTSMTQNQ 623
>gb|AQK63292.1| hypothetical protein ZEAMMB73_Zm00001d013388 [Zea mays]
Length = 701
Score = 51.6 bits (122), Expect(3) = 2e-13
Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 202 ITIENSMCLGNMGFVWLT*SCSIKL*YAI----KMID*WRIGTLISIYKNKGDVQSCSSY 369
I IE CLG++ VWLT KL I +M D WR TL+ I+KNKGDVQSC +Y
Sbjct: 422 IPIEVWRCLGDITIVWLT-----KLFNTIFRTNRMPDEWRRSTLVPIFKNKGDVQSCINY 476
Query: 370 R 372
R
Sbjct: 477 R 477
Score = 38.1 bits (87), Expect(3) = 2e-13
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = +2
Query: 449 FMAGKPGMETIFLLRLSMERYREKRRNLYM 538
FM G+ ME IFLLR MER+RE++++++M
Sbjct: 510 FMPGRSTMEAIFLLRQLMERFREQKKDMHM 539
Score = 32.7 bits (73), Expect(3) = 2e-13
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 369 SYTMKHWERVIEQ*LRKEIFVLENQF 446
S+ MK WERVIE LRK V +NQF
Sbjct: 483 SHIMKLWERVIEHRLRKMTSVTQNQF 508
>gb|AQK78972.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 634
Score = 46.2 bits (108), Expect(3) = 3e-12
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +1
Query: 202 ITIENSMCLGNMGFVWLT*SCSIKL*YAIKMID*WRIGTLISIYKNKGDVQSCSSY 369
I IE CLG VWLT ++ + + KM WR L+ I+KNKGDVQSC++Y
Sbjct: 193 IPIEVWRCLGARAIVWLTKLFNL-IFRSNKMPKEWRRSILVPIFKNKGDVQSCTNY 247
Score = 38.1 bits (87), Expect(3) = 3e-12
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = +2
Query: 449 FMAGKPGMETIFLLRLSMERYREKRRNLYM 538
FM G+ +E IFL+R MERYRE++++L+M
Sbjct: 281 FMPGRSTIEAIFLIRQLMERYREQKKDLHM 310
Score = 34.3 bits (77), Expect(3) = 3e-12
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 366 LSYTMKHWERVIEQ*LRKEIFVLENQF 446
+S+TMK WERVIE LR+ V +NQF
Sbjct: 253 MSHTMKLWERVIEHRLRRVTSVSQNQF 279
>gb|ONM33417.1| Reverse transcriptase [Zea mays]
Length = 560
Score = 58.2 bits (139), Expect(2) = 3e-09
Identities = 46/120 (38%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Frame = +1
Query: 202 ITIENSMCLGNMGFVWLT*SCSIKL*YAI----KMID*WRIGTLISIYKNKGDVQSCSSY 369
I IE CLG++ VWLT KL I KM D WR TL+ I+KNKGDVQSC++Y
Sbjct: 434 IPIEVGRCLGDIAIVWLT-----KLFNTIFRINKMPDEWRRSTLVPIFKNKGDVQSCTNY 488
Query: 370 R-------TQ*NIGRESLNND*EKKYLC*RINLIYGRKARYGDYFSTKIVYGEI*GEKEK 528
R T R + E+ + + + YG +F TK YGEI KE+
Sbjct: 489 RGVKLMSHTIKLWERVIEHRLRERTSVTQNQFGFHAWEINYGGHFITKTTYGEIQRTKER 548
Score = 30.8 bits (68), Expect(2) = 3e-09
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 2 LVKDDEINEGRKSYLHKLFI--KITLSIDLNQIIQTGKKLLVLSKNN*ASEIKDAIKKME 175
LVK++EI K Y +KLF + +I+L++ + V E+K+A+K+M+
Sbjct: 367 LVKNEEIKNRWKEYFNKLFNGGNESSTIELDEPFNDNNRGFVRRIQE--YEVKEALKRMK 424
Query: 176 IGSAV 190
+G+A+
Sbjct: 425 VGNAM 429
>gb|AQK68857.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 557
Score = 57.4 bits (137), Expect = 2e-06
Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Frame = +1
Query: 196 NDITIENSMCLGNMGFVWLT*SCSIKL*YAI----KMID*WRIGTLISIYKNKGDVQSCS 363
N I IE CLG++ VWLT KL I +M D WR TL+SI+KNKGDVQSC+
Sbjct: 91 NGIPIEVWRCLGDIAIVWLT-----KLFNTIFRTNRMPDEWRRSTLVSIFKNKGDVQSCT 145
Query: 364 SYR 372
+YR
Sbjct: 146 NYR 148