BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00036574
         (610 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     201   3e-56
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          189   5e-52
ref|XP_020259152.1| topless-related protein 1-like [Asparagus of...   162   4e-44
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...   145   6e-37
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   144   5e-36
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         143   9e-36
gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposo...   140   2e-35
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   140   8e-35
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     140   8e-35
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo...   137   1e-34
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   139   2e-34
gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna ...   136   2e-34
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo...   137   2e-34
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     139   3e-34
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   137   4e-34
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     138   4e-34
gb|AFB73912.1| polyprotein [Citrus sinensis]                          138   5e-34
gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposo...   135   8e-34
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     137   9e-34
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   137   9e-34

>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  201 bits (512), Expect = 3e-56
 Identities = 112/220 (50%), Positives = 144/220 (65%), Gaps = 18/220 (8%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            ++ KCAEEVWSGK +D S L+VFGC AY HIP DER KL+PKSLEC+F+GFEKGVKGYKL
Sbjct: 601  INFKCAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKL 660

Query: 427  WDPKNQ-KVLSRDVVFDER-------LGAKTADKDEVHEENRR--TEIPLSKDGSVPENQ 278
            WD  N+ KV+SRDVVFDER            AD +   E+N +   E+ + +    PE+Q
Sbjct: 661  WDIVNEKKVISRDVVFDEREAISISLAKPSVADSEAQVEQNEQGNDEVAIEE----PEHQ 716

Query: 277  ATPETQAQVELPGEQ------PGEVQAEPTCIAKSKPKRVSKAPQRYGW--EDEACYALL 122
              P   AQVE   ++      P   ++    IA  KPKR  K  QR+G+  E++   AL 
Sbjct: 717  QQPTVMAQVEQSPQRGQNSPIPQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALS 776

Query: 121  ASEEDPSTFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
             S+ DP+T+++A+ES E  GW+GAM+EEMESL KNSVWEL
Sbjct: 777  ISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVWEL 816


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  189 bits (479), Expect = 5e-52
 Identities = 101/216 (46%), Positives = 135/216 (62%), Gaps = 14/216 (6%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            L+ K AEEVW+GK IDL  L++FGC  +VHI S++R+KL PKS +CIF+G+ KGVKG+KL
Sbjct: 548  LEGKVAEEVWTGKPIDLDNLRIFGCPTFVHISSEDRSKLDPKSKKCIFVGYSKGVKGFKL 607

Query: 427  WDPKNQK-VLSRDVVFDERLGAKTADKDEVHE----ENRRTEIPLSKDGSVPEN------ 281
            WDP ++K VLSRDVVFDE+   K + + EV E     + +  I +  + +  +N      
Sbjct: 608  WDPVSKKMVLSRDVVFDEQFMLKQSRETEVTESAGGSSGKEVIQVELEPTPNKNTSAVHQ 667

Query: 280  ---QATPETQAQVELPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWEDEACYALLASEE 110
               + TP      +  G     V  +   +A+ + +R    PQRYG+ED A YALL S  
Sbjct: 668  QPPEPTPINHDTADSGGASEDSVGVDDYQLARDRERRSINPPQRYGFEDLAAYALLTSSG 727

Query: 109  DPSTFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            DPSTF+EA+ S E+  WMGAM EEMESL KN  WEL
Sbjct: 728  DPSTFREAIVSQEKDKWMGAMMEEMESLQKNQTWEL 763


>ref|XP_020259152.1| topless-related protein 1-like [Asparagus officinalis]
          Length = 467

 Score =  162 bits (410), Expect = 4e-44
 Identities = 82/114 (71%), Positives = 95/114 (83%), Gaps = 2/114 (1%)
 Frame = -1

Query: 610 LLDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYK 431
           LL+ KCAE+VWS K++D STLKVFGCKAYVHIPSD+RNKLKPKSLE IFLGFEK VK YK
Sbjct: 36  LLNFKCAEKVWSDKEVDYSTLKVFGCKAYVHIPSDKRNKLKPKSLEYIFLGFEKRVKVYK 95

Query: 430 LWDPKN-QKVLSRDVVFDERLGAKTADKDEVHEEN-RRTEIPLSKDGSVPENQA 275
           LWDPKN +KV+SRDV+FDERLGA+  DKD   EEN RRT+IPLS + +    +A
Sbjct: 96  LWDPKNKKKVMSRDVLFDERLGAEAIDKDNDREENHRRTKIPLSTEANTNPEEA 149


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 595

 Score =  145 bits (365), Expect = 6e-37
 Identities = 87/227 (38%), Positives = 121/227 (53%), Gaps = 32/227 (14%)
 Frame = -1

Query: 586 EVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKLWDPKNQK 407
           E+W+GK  + S L+VFGC AY H+      KL P+S +C+F+G+  GVKGY++W P  +K
Sbjct: 260 EIWTGKPTNYSNLRVFGCNAYYHV---NEGKLLPRSRKCLFMGYGDGVKGYRIWSPSEKK 316

Query: 406 V-LSRDVVFD---------------------------ERLGAKTADKDEVHEENRRTEIP 311
           V LSRDV+FD                           E +  KT DKD + + +      
Sbjct: 317 VILSRDVIFDESHLFHPKLEVPITATHNSHPPQVGKVESISEKTEDKDLLDKFSE----- 371

Query: 310 LSKDGSVPENQATPETQAQVELPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWEDEACY 131
            S++    EN +  E+    E     P  +Q  P      KPKRV K P+RYG+ED A Y
Sbjct: 372 ASQEEEQSENSSANESHQNAE-----PDSIQLNPG--ISQKPKRVIKPPERYGFEDMATY 424

Query: 130 ALLASEE----DPSTFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
           AL A+EE    +P+T++EA+   E + W+ AM EEMESL KN  W+L
Sbjct: 425 ALHAAEEIDSDEPTTYKEAISHPEAEKWILAMREEMESLYKNQTWKL 471


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  144 bits (362), Expect = 5e-36
 Identities = 88/214 (41%), Positives = 118/214 (55%), Gaps = 12/214 (5%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            +D K   EVWSG   + S L+VFGC AY H+   +  KL+P++++CIFLG+  GVKGYKL
Sbjct: 847  IDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKL 903

Query: 427  WDPKNQK-VLSRDVVFDERLGAKTADKDEVHEENRRTEI----PLSKDGSVPENQATPET 263
            W P+ +K V+SR+VVF E +         V  E++         L   G  PE +     
Sbjct: 904  WCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAIN 963

Query: 262  QAQVELPGEQPGEVQAEP-TCIAKSKPKRVSKAPQRYGWE-DEACYALLASEE-----DP 104
            Q +  +       VQ  P   IAK +PKR  K PQRY  E +   YAL  +EE     +P
Sbjct: 964  QDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEP 1023

Query: 103  STFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            ST+ EA+ SD+   W+ AM +EMESL KN  WEL
Sbjct: 1024 STYSEAIVSDDCNRWITAMHDEMESLEKNHTWEL 1057


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  143 bits (360), Expect = 9e-36
 Identities = 87/214 (40%), Positives = 118/214 (55%), Gaps = 12/214 (5%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            +D K   EVWS   ++ S L+VFGC AY H+   +  KL+P++++CIFLG+  G+KGYKL
Sbjct: 422  IDKKTPIEVWSDSPVNYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGMKGYKL 478

Query: 427  WDPKNQK-VLSRDVVFDERLGAKTADKDEVHEENRRTEI----PLSKDGSVPENQATPET 263
            W PK +K V+SR+VVF E +         V  E++         L   G  PE +     
Sbjct: 479  WCPKTKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAIN 538

Query: 262  QAQVELPGEQPGEVQAEP-TCIAKSKPKRVSKAPQRYGWE-DEACYALLASEE-----DP 104
            Q    +       VQ  P   IAK KPKR +K PQRY  E +   YAL  +E+     +P
Sbjct: 539  QDVPVIEDSDSSTVQQSPKRFIAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEP 598

Query: 103  STFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            ST+ EA+ SD+   W+ AM +EMESL KN  WEL
Sbjct: 599  STYSEAIVSDDCNRWITAMHDEMESLEKNHTWEL 632


>gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 507

 Score =  140 bits (352), Expect = 2e-35
 Identities = 83/221 (37%), Positives = 123/221 (55%), Gaps = 18/221 (8%)
 Frame = -1

Query: 610 LLDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYK 431
           ++D K   EVWS K  + S L+VFGC AY H+      KL+P+S + +F+G+  GVKGY+
Sbjct: 250 IIDCKTPIEVWSNKPANYSLLRVFGCNAYYHV---NEGKLEPRSKKGLFMGYGDGVKGYR 306

Query: 430 LWDPKNQKV-LSRDVVFDER----------LGAKTADKDEVHEENRRTEIPLSKDGSVPE 284
           +W P  +KV LSRDV+FDE           +  K     +  E+ + +   L ++ S   
Sbjct: 307 IWSPAERKVILSRDVIFDESHLFYPSLEFTVSGKNQKILKQVEDGKTSGSILDEEKSEDF 366

Query: 283 NQATPETQAQVE---LPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWEDEACYALLASE 113
           N+ + + Q +V+       Q   +Q +    A  KPKR+S  P RYG+ED   YAL  +E
Sbjct: 367 NEESQQQQFRVDDSDPSSPQGSSLQTQYDTEAYQKPKRISNPPVRYGFEDMMAYALHVAE 426

Query: 112 E----DPSTFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
           E    +P+T++EA++  E   W+ AM EEMESL KN  W+L
Sbjct: 427 EVDTTEPATYKEAMDHAEADKWILAMKEEMESLQKNQTWKL 467


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  140 bits (353), Expect = 8e-35
 Identities = 84/212 (39%), Positives = 122/212 (57%), Gaps = 10/212 (4%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            L  K  +E W+GK  D   LKVFGC AYVH  +D   KL+P++++CIFLG+ KGVKGYKL
Sbjct: 598  LQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTD---KLEPRAVKCIFLGYPKGVKGYKL 654

Query: 427  W---DPKNQKVLSRDVVFDERLGAKTADKDEVHEENRRTEIPLSKDGSVPE-NQATPETQ 260
            W     K + ++SRDV F+E+  +K     +V E   + +  +  +   PE ++ T    
Sbjct: 655  WIETQGKGKCIISRDVTFNEQDMSKQTPAKDV-EGLDQLQFEVEHETLQPEKSKETSSKT 713

Query: 259  AQVELPGEQPGEVQA--EPTCIAKSKPKRVSKAPQRYGWEDEACYALLASEE----DPST 98
            AQ E+  E+  E     E   + + + KR  K P+RYG  +   +AL  +EE    +P T
Sbjct: 714  AQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKT 773

Query: 97   FQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            +QEA+ S+E   W+ A+ EEM+SL KN  WEL
Sbjct: 774  YQEAINSNEADQWVKAIQEEMDSLRKNETWEL 805


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  140 bits (353), Expect = 8e-35
 Identities = 88/214 (41%), Positives = 115/214 (53%), Gaps = 12/214 (5%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            +D K   EVWSG   + S L+VFGC AY H+   +  KL+P++++CIFLG+  GVK YKL
Sbjct: 519  IDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKDYKL 575

Query: 427  WDPKNQK-VLSRDVVFDERLGAKTADKDEVHEENRRTEI----PLSKDGSVPENQATPET 263
            W PK +K V+SR+VVF E +         V  E++         L   G  PE +     
Sbjct: 576  WCPKTKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAIN 635

Query: 262  QAQVELPGEQPGEVQAEP-TCIAKSKPKRVSKAPQRYGWE-DEACYALLASEE-----DP 104
            Q    +       VQ  P   IAK KPKR  K P+RY  E +   YAL  +EE     +P
Sbjct: 636  QDASVIEDSDSSAVQQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEP 695

Query: 103  STFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            ST+ EA+ SD    W+ AM +EMESL KN  WEL
Sbjct: 696  STYSEAIVSDGCNRWITAMHDEMESLEKNHTWEL 729


>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 516

 Score =  137 bits (346), Expect = 1e-34
 Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 11/213 (5%)
 Frame = -1

Query: 607 LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
           L+ K  +EVWSG+ +D S L+VFGC AY HI  D   KL+P++L+ IF+G+ +GVKGY+L
Sbjct: 168 LEFKTPQEVWSGRKVDYSELRVFGCIAYAHIKQD---KLEPRALKFIFIGYPEGVKGYRL 224

Query: 427 W--DPKNQK-VLSRDVVFDERLGAKTA--DKDEVHEENRRTEIPLSKDGSV-PENQATPE 266
           W  +P  +K ++SRDVVF+E   A      K E+HE+++   I +  + +V  E +A  +
Sbjct: 225 WCLEPGYKKCLISRDVVFNEIEMANLVKPSKVEIHEKSQDQTIKIEVEFTVITEAKAATQ 284

Query: 265 TQAQVELPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWEDEACYAL-----LASEEDPS 101
            Q  +        E   +   +A+ + +R  KAPQRYG  D   +A      L   ++P 
Sbjct: 285 RQQHILQQELDDEERSIQSYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPK 344

Query: 100 TFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
           ++ EA+ S ++  W+ AM EEM SL KN  W L
Sbjct: 345 SYSEAMRSKDKNSWLKAMKEEMGSLEKNQTWIL 377


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  139 bits (350), Expect = 2e-34
 Identities = 80/215 (37%), Positives = 123/215 (57%), Gaps = 13/215 (6%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            +  K   E+WSGK  D S LK FGC AY H+      KL+P++ + +F+G+  GVKG+++
Sbjct: 618  IQCKTPMEMWSGKAADYSNLKAFGCTAYYHV---SEGKLEPRAKKGVFVGYGDGVKGFRI 674

Query: 427  WDPKNQKVL-SRDVVFDE----RLGAKTADKDEVHEENRRTEIPLSKDGS---VPENQAT 272
            W P  ++V+ SR+VVFDE    R   K     E    +++ E  + ++ S    PE +  
Sbjct: 675  WSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEE-D 733

Query: 271  PETQAQVELPGEQPGEVQAEPTCIAKSKPKRVS-KAPQRYGWEDEACYALLASEE----D 107
             E Q + ++P   P ++      IA+ +P+RV  + P RYG+ED   YAL  +EE    +
Sbjct: 734  QEPQTETDIPESMPSDIHQS---IAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSE 790

Query: 106  PSTFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            PST++EA+ S + + W  AM +EMESL KN  W+L
Sbjct: 791  PSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDL 825


>gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna angularis]
          Length = 473

 Score =  136 bits (343), Expect = 2e-34
 Identities = 80/203 (39%), Positives = 110/203 (54%), Gaps = 4/203 (1%)
 Frame = -1

Query: 598 KCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKLWDP 419
           K   E+W GK  D S+L VFGC  YV   S ER KL PKS +CIFLG+   VKGY+LWDP
Sbjct: 244 KTPMEMWKGKPADYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDP 303

Query: 418 KNQKVL-SRDVVFDERLGAKTADKDEVHEENRRTEIPLSKDGSVPENQATPETQAQVELP 242
              K++ SRDVVF E+L        +  ++N  T I ++      +++    ++A+ E  
Sbjct: 304 TAHKIIVSRDVVFAEKL--------QSEQKNVSTPIDITSVQIEEKSKDNDSSEAEPEHD 355

Query: 241 GEQPGEVQAEPTCIAKSKPKRVSKAP---QRYGWEDEACYALLASEEDPSTFQEAVESDE 71
            ++P EV  E       +  R+ K P     Y   +   Y LL  E +PSTFQ A+ S +
Sbjct: 356 EQEPNEVNHEDA----RRTTRLMKKPSWHSDYVMANHDAYCLLTEEGEPSTFQAALRSSD 411

Query: 70  RQGWMGAMSEEMESLSKNSVWEL 2
              WM AM EE+E+L +N  WEL
Sbjct: 412 VSQWMTAMHEEIEALHRNKTWEL 434


>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 530

 Score =  137 bits (345), Expect = 2e-34
 Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 14/216 (6%)
 Frame = -1

Query: 607 LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
           +D K  +EVWSGK  D S L++FGC AY H+      KL+P++++CIFLG+  GVKGY+L
Sbjct: 19  IDLKTPQEVWSGKPSDYSGLRIFGCPAYAHVND---GKLEPRAMKCIFLGYPTGVKGYRL 75

Query: 427 WDPKNQK----VLSRDVVFDERLGAKTADKDEVHEENRRTEIPLSKDGSVPENQATPETQ 260
           W  +N +    V+SRDV F+E   A    K+EV  EN       +K           ++ 
Sbjct: 76  WCTENNRTKKIVISRDVTFNE--SAMFGQKEEV--ENLAGNKSTNKGVHQKVEFEVEDSN 131

Query: 259 AQVELPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGW------EDEACYALLASE----E 110
            +   P EQ   VQ EP  IA  + +R  + P RY         +   YALL  E    +
Sbjct: 132 KENLNPVEQSSNVQEEPQSIATRRTRREIRKPTRYADVTNVVDTNSVAYALLVGENLDSD 191

Query: 109 DPSTFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
           +P +++EA++S E   W+ AM EEM+SL KN  WEL
Sbjct: 192 EPKSYKEAIQSKEASKWLIAMDEEMQSLKKNQTWEL 227


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  139 bits (349), Expect = 3e-34
 Identities = 86/214 (40%), Positives = 116/214 (54%), Gaps = 12/214 (5%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            +D K   EVWSG   + S L+VFGC AY H+   +  KL+P++++CIFLG+  GVKGYKL
Sbjct: 612  IDKKTPIEVWSGSPTNYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYASGVKGYKL 668

Query: 427  WDPKNQK-VLSRDVVFDERLGAKTADKDEVHEENRRTEI----PLSKDGSVPENQATPET 263
            W P+ +K V+SR+VVF E +         V  E++         L   G  PE +     
Sbjct: 669  WCPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAIN 728

Query: 262  QAQVELPGEQPGEVQAEP-TCIAKSKPKRVSKAPQRYGWEDE-ACYALLASEE-----DP 104
            Q    +       V   P   IAK KPKR  K P+RY  E +   YAL  +E+     +P
Sbjct: 729  QDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEP 788

Query: 103  STFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            ST+ EA+ SD+   W+ AM +EMESL KN  WEL
Sbjct: 789  STYSEAIVSDDCNRWITAMHDEMESLEKNHTWEL 822


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 634

 Score =  137 bits (346), Expect = 4e-34
 Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 11/213 (5%)
 Frame = -1

Query: 607 LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
           L+ K  +EVWSG+ +D S L+VFGC AY HI  D   KL+P++L+ IF+G+ +GVKGY+L
Sbjct: 286 LEFKTPQEVWSGRKVDYSELRVFGCIAYAHIKQD---KLEPRALKFIFIGYPEGVKGYRL 342

Query: 427 W--DPKNQK-VLSRDVVFDERLGAKTA--DKDEVHEENRRTEIPLSKDGSV-PENQATPE 266
           W  +P  +K ++SRDVVF+E   A      K E+HE+++   I +  + +V  E +A  +
Sbjct: 343 WCLEPGYKKCLISRDVVFNEIEMANLVKPSKVEIHEKSQDQTIKIEVEFTVITEAKAATQ 402

Query: 265 TQAQVELPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWEDEACYAL-----LASEEDPS 101
            Q  +        E   +   +A+ + +R  KAPQRYG  D   +A      L   ++P 
Sbjct: 403 RQQHILQQELDDEERSIQSYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPK 462

Query: 100 TFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
           ++ EA+ S ++  W+ AM EEM SL KN  W L
Sbjct: 463 SYSEAMRSKDKNSWLKAMKEEMGSLEKNQTWIL 495


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  138 bits (348), Expect = 4e-34
 Identities = 86/214 (40%), Positives = 117/214 (54%), Gaps = 12/214 (5%)
 Frame = -1

Query: 607  LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
            +D K   EVWSG   + S L+VFGC AY H+   +  KL+P+ ++CIFLG+  GVKGYKL
Sbjct: 549  IDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRVIKCIFLGYLSGVKGYKL 605

Query: 427  WDPKNQK-VLSRDVVFDERLGAKTADKDEVHEENRRTEI----PLSKDGSVPENQATPET 263
            W P+ +K V+SR+VVF E +         V  E++         L   G  PE +     
Sbjct: 606  WCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAIN 665

Query: 262  QAQVELPGEQPGEVQAEP-TCIAKSKPKRVSKAPQRYGWE-DEACYALLASEE-----DP 104
            Q    +       VQ  P   IAK +PKR +K P+RY  E +   YAL  +EE     +P
Sbjct: 666  QDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEP 725

Query: 103  STFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
            ST+ +A+ SD+   W+ AM +EMESL KN  WEL
Sbjct: 726  STYSDAIVSDDCNRWITAMHDEMESLEKNHSWEL 759


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  138 bits (347), Expect = 5e-34
 Identities = 82/201 (40%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
 Frame = -1

Query: 598  KCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKLWDP 419
            K A E+W+GK  D S L  FGC  YV   + ER KL PKS +CIFLG+  GVKGY+LWDP
Sbjct: 632  KTAMEMWTGKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLWDP 691

Query: 418  KNQK-VLSRDVVF-DERLGAKTADKDEVHEENRRTEIPLSKDGSVPENQATPETQAQVEL 245
               K V+SRDV+F +++L  K  D   V E++    + +  +   PEN  +  ++A  E 
Sbjct: 692  TAHKIVISRDVIFVEDQLQRKDGDDGTVKEKSETVPVYVENN---PEN--SDSSEAAPEH 746

Query: 244  PGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWEDEACYALLASEEDPSTFQEAVESDERQ 65
              ++P E +A P     ++ +R       Y  E    Y LL  + +PSTF EA+ S +  
Sbjct: 747  EEQEPVESEA-PEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSLDVA 805

Query: 64   GWMGAMSEEMESLSKNSVWEL 2
             WM AM EE+E+L KN  WEL
Sbjct: 806  LWMTAMQEEIEALHKNKTWEL 826


>gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 498

 Score =  135 bits (340), Expect = 8e-34
 Identities = 76/215 (35%), Positives = 120/215 (55%), Gaps = 13/215 (6%)
 Frame = -1

Query: 607 LDSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKL 428
           L++K   E W GK +D S L+VFG  AY H+   +  KL+P++++C+F+G+  GVKGYKL
Sbjct: 221 LNNKTPMEAWHGKPVDYSNLRVFGSLAYAHV---KEGKLEPRAVKCVFIGYPDGVKGYKL 277

Query: 427 WDPKN---QKVLSRDVVFDE-RLGAKTADKDEVHEENRRTEIPLSKDGSVPENQATP-ET 263
           W  +    + ++SRDV FDE +LG    ++ ++ E + +  +    + S   ++    E 
Sbjct: 278 WKLEKGGGKCIISRDVTFDETKLGI--LEEQQMEESSSKDHVQFEVESSTHSSEINQTEN 335

Query: 262 QAQVELPGEQPGEVQAEPTC----IAKSKPKRVSKAPQRYGWEDEACYALLASEE----D 107
             ++       GEV          + + + +RV K   RYG+ D  CYAL  + E    +
Sbjct: 336 SEEITDGASSSGEVARNQDISSYQLVRDRARRVPKPSSRYGYADLICYALNTANEVQGFE 395

Query: 106 PSTFQEAVESDERQGWMGAMSEEMESLSKNSVWEL 2
           P T++EA+ES E Q WM A+ EEM+SL KN  W+L
Sbjct: 396 PKTYKEAMESSEAQDWMKAVHEEMKSLQKNLTWKL 430


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  137 bits (345), Expect = 9e-34
 Identities = 87/212 (41%), Positives = 116/212 (54%), Gaps = 12/212 (5%)
 Frame = -1

Query: 604  DSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKLW 425
            D K   EVWSG   + S L+VFGC AY H+   +  KL+P++++CIFLG+  GVKGYKLW
Sbjct: 676  DKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKLW 732

Query: 424  DPKNQK-VLSRDVVFDERLGAKTADKDEVHEENRRTEI----PLSKDGSVPENQATPETQ 260
             P+ +K V+SR+VVF E +         V  E++         L   G  PE +     Q
Sbjct: 733  CPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQ 792

Query: 259  -AQVELPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWE-DEACYALLASEE-----DPS 101
             A V    +     Q+    IAK KPKR  K P+RY  E +   YAL  +EE     +PS
Sbjct: 793  DAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPS 852

Query: 100  TFQEAVESDERQGWMGAMSEEMESLSKNSVWE 5
            T+ EA+ SD+   W+ AM +EMESL KN  WE
Sbjct: 853  TYSEAIVSDDCNRWITAMHDEMESLKKNHTWE 884


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  137 bits (345), Expect = 9e-34
 Identities = 87/212 (41%), Positives = 116/212 (54%), Gaps = 12/212 (5%)
 Frame = -1

Query: 604  DSKCAEEVWSGKDIDLSTLKVFGCKAYVHIPSDERNKLKPKSLECIFLGFEKGVKGYKLW 425
            D K   EVWSG   + S L+VFGC AY H+   +  KL+P++++CIFLG+  GVKGYKLW
Sbjct: 676  DKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKLW 732

Query: 424  DPKNQK-VLSRDVVFDERLGAKTADKDEVHEENRRTEI----PLSKDGSVPENQATPETQ 260
             P+ +K V+SR+VVF E +         V  E++         L   G  PE +     Q
Sbjct: 733  CPETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQ 792

Query: 259  -AQVELPGEQPGEVQAEPTCIAKSKPKRVSKAPQRYGWE-DEACYALLASEE-----DPS 101
             A V    +     Q+    IAK KPKR  K P+RY  E +   YAL  +EE     +PS
Sbjct: 793  DAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPS 852

Query: 100  TFQEAVESDERQGWMGAMSEEMESLSKNSVWE 5
            T+ EA+ SD+   W+ AM +EMESL KN  WE
Sbjct: 853  TYSEAIVSDDCNRWITAMHDEMESLKKNHTWE 884