BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00035570
         (962 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020251441.1| pentatricopeptide repeat-containing protein ...   140   5e-34
ref|XP_010925750.1| PREDICTED: pentatricopeptide repeat-containi...   112   1e-30
ref|XP_018679504.1| PREDICTED: pentatricopeptide repeat-containi...   112   2e-28
ref|XP_020573314.1| pentatricopeptide repeat-containing protein ...    99   5e-25
ref|XP_020674193.1| pentatricopeptide repeat-containing protein ...    99   4e-24
ref|XP_020674215.1| pentatricopeptide repeat-containing protein ...    99   4e-24
ref|XP_020674218.1| pentatricopeptide repeat-containing protein ...    99   4e-24
ref|XP_017696777.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   110   4e-23
gb|OAY68607.1| Pentatricopeptide repeat-containing protein, mito...    93   8e-23
ref|XP_020102406.1| pentatricopeptide repeat-containing protein ...    93   1e-22
gb|PKA54080.1| Pentatricopeptide repeat-containing protein [Apos...    91   3e-21
ref|XP_010271694.1| PREDICTED: pentatricopeptide repeat-containi...    79   6e-19
ref|XP_008783963.1| PREDICTED: pentatricopeptide repeat-containi...    89   3e-17
ref|XP_020524426.1| pentatricopeptide repeat-containing protein ...    80   5e-17
ref|XP_020688297.1| pentatricopeptide repeat-containing protein ...    69   1e-13
pdb|5I9D|A Chain A, Crystal Structure Of Designed Pentatricopept...    81   3e-13
gb|POE91079.1| pentatricopeptide repeat-containing protein [Quer...    80   7e-13
ref|XP_023928169.1| pentatricopeptide repeat-containing protein ...    80   8e-13
pdb|5I9H|A Chain A, Crystal Structure Of Designed Pentatricopept...    79   1e-12
pdb|5I9G|C Chain C, Crystal Structure Of Designed Pentatricopept...    78   2e-12

>ref|XP_020251441.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Asparagus officinalis]
 ref|XP_020251442.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Asparagus officinalis]
 ref|XP_020251443.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Asparagus officinalis]
 ref|XP_020251444.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Asparagus officinalis]
 ref|XP_020251445.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Asparagus officinalis]
 ref|XP_020251446.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Asparagus officinalis]
 gb|ONK81189.1| uncharacterized protein A4U43_C01F26280 [Asparagus officinalis]
          Length = 503

 Score =  140 bits (352), Expect = 5e-34
 Identities = 96/228 (42%), Positives = 114/228 (50%), Gaps = 35/228 (15%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN------------------------ 225
           SV+AYNCVLAGLCNEGRM+LA  +YVRMVKSGVWAN                        
Sbjct: 210 SVIAYNCVLAGLCNEGRMRLAQLLYVRMVKSGVWANLMTYTGLMSGFVKEKKMDDAKKIF 269

Query: 226 --WXXXXXXXXXXXXXXYFKGFVRMGRWKELC---------GLCSNEVTYTALIGGLCDK 372
                               GF   G+ +E           GL  NEVTYTAL+GGLC+K
Sbjct: 270 DEMLEKELAPNVVTYTTLVHGFCFNGQIEEAVKMVEEMVERGLRPNEVTYTALMGGLCEK 329

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMDCARXXXXXXXXXXXXXXFGRS 552
           GRV EA  LLD M  +GL  NEFT  K     +     +                  G S
Sbjct: 330 GRVREAMGLLDRMGVEGLSPNEFTYSK----LMDGSCKEGRIEEAIDLFDKMKEKGLGTS 385

Query: 553 IVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRC 696
           IV YN VLISGFC++  M++ MK+ Q IT   +KPD+IT+NTLI G C
Sbjct: 386 IVPYN-VLISGFCRIGEMEEAMKVLQNITEEGAKPDVITYNTLINGFC 432


>ref|XP_010925750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63330-like [Elaeis guineensis]
 ref|XP_010925751.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63330-like [Elaeis guineensis]
          Length = 649

 Score =  112 bits (281), Expect(2) = 1e-30
 Identities = 81/229 (35%), Positives = 108/229 (47%), Gaps = 35/229 (15%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN------------------------ 225
           S +AYNCVLAGLC+ G+MKLA+ +Y R+VK GV  N                        
Sbjct: 213 SEIAYNCVLAGLCSGGKMKLAMMLYARIVKMGVKGNVITYTGFINGLCQERRLVEAKLLF 272

Query: 226 --WXXXXXXXXXXXXXXYFKGFVRMGRWKELCGL--------CS-NEVTYTALIGGLCDK 372
                               G   +G+ +E  G+        CS N VTYT +IGGLC +
Sbjct: 273 DEMLEKGFSPNVITYTALIHGLCAVGQLEEAMGMIQEMVGRGCSPNVVTYTGVIGGLCKE 332

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMDCARXXXXXXXXXXXXXXFGRS 552
           G V+EA  LLDVM ++G+  NEFT C      L                       F  +
Sbjct: 333 GMVEEALRLLDVMIQQGVDPNEFTYCT----LLNGLCKRGQIEEASRFFHQIEERGFRDN 388

Query: 553 IVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
           +VAYN +LI  FCKM  M++   + QEI R   +PD+IT+NTLI+G C+
Sbjct: 389 VVAYN-ILICAFCKMGNMEEARNLLQEIKRKGIQPDVITYNTLIDGYCK 436



 Score = 50.1 bits (118), Expect(2) = 1e-30
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGLV 115
           GPS DSR +SILIDF+C + N E G+RLI EML  GLV
Sbjct: 174 GPSPDSRTYSILIDFVCSNSNSELGMRLISEMLRIGLV 211


>ref|XP_018679504.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Musa acuminata subsp. malaccensis]
 ref|XP_018679505.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Musa acuminata subsp. malaccensis]
 ref|XP_018679506.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Musa acuminata subsp. malaccensis]
 ref|XP_018679508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Musa acuminata subsp. malaccensis]
 ref|XP_009393730.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Musa acuminata subsp. malaccensis]
          Length = 635

 Score =  112 bits (279), Expect(2) = 2e-28
 Identities = 82/238 (34%), Positives = 107/238 (44%), Gaps = 44/238 (18%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           S  AYNC L+GLC EGRMK +  +Y RM K G+  N               +  G  R G
Sbjct: 213 SAAAYNCALSGLCKEGRMKGSRILYARMTKLGIKGN---------VVSFTGFISGLCREG 263

Query: 298 RWKE-----------------------LCGLCS---------------------NEVTYT 345
             +E                       + GLCS                     N VTYT
Sbjct: 264 EIEEAKIVFIEMSEMGIRPNVMTYTALIHGLCSHGQIDDAKKTMRYMVHLGVAPNVVTYT 323

Query: 346 ALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMDCARXXXXXXXXX 525
           A++G LC KGRV+EA+ LLD M ++G+  NEFT C      L                  
Sbjct: 324 AVLGELCKKGRVEEASRLLDEMGQQGIDPNEFTYCT----LLDGLCKSGKLEEAMQFFRR 379

Query: 526 XXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
                FG +IVAYN  LISGFCK   +D+  ++ +EI +  SKPD+I +NTLI+G C+
Sbjct: 380 FQRQGFGDNIVAYN-TLISGFCKKGFVDEASRLLEEIMQKGSKPDVIMYNTLIDGFCK 436



 Score = 43.1 bits (100), Expect(2) = 2e-28
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGLV 115
           GP  + R +SILID  C S N   GLRLIGEML  GLV
Sbjct: 174 GPRPNDRTYSILIDSACGSSNSSLGLRLIGEMLGIGLV 211


>ref|XP_020573314.1| pentatricopeptide repeat-containing protein At1g62914,
           mitochondrial-like [Phalaenopsis equestris]
          Length = 628

 Score = 99.4 bits (246), Expect(2) = 5e-25
 Identities = 75/234 (32%), Positives = 105/234 (44%), Gaps = 40/234 (17%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN-----------------------W 228
           S + YNCVLAGLC EG++K A  +Y R+ K GV  N                       +
Sbjct: 210 SSITYNCVLAGLCAEGKLKSANALYSRLRKLGVMPNVVTCTGFLSSLCRKNRLAEAQILF 269

Query: 229 XXXXXXXXXXXXXXY------------FKGFVRMGRWKELCGLCSNEVTYTALIGGLCDK 372
                         Y            F+  + M    + CGL  N +TYT +I   C +
Sbjct: 270 YEMLENGLFPSERTYSALIHGLALDGQFEKAIEMIEEMQCCGLSPNVITYTGIITSFCKE 329

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMD--CAR---XXXXXXXXXXXXX 537
           GR++EA  ++D+++EKGL  NEFT          S  +D  C +                
Sbjct: 330 GRLEEAKRVIDMLKEKGLRPNEFT---------YSTLIDGFCIKGRLEDAVSVFSQMEDE 380

Query: 538 XFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
               +IVAYN  LI GFCK   M++ MK+ Q I    SKPD+IT+NTL++G C+
Sbjct: 381 GIVNNIVAYN-TLIRGFCKSGNMEEAMKLLQVIVCKGSKPDVITYNTLMDGYCK 433



 Score = 44.7 bits (104), Expect(2) = 5e-25
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGLV 115
           GPS +SR  SILI ++C+SLN E GL+LI +ML  GLV
Sbjct: 171 GPSPNSRTFSILIVYVCKSLNSEIGLQLINQMLILGLV 208


>ref|XP_020674193.1| pentatricopeptide repeat-containing protein At5g39710-like isoform
           X1 [Dendrobium catenatum]
 ref|XP_020674198.1| pentatricopeptide repeat-containing protein At5g39710-like isoform
           X1 [Dendrobium catenatum]
 ref|XP_020674207.1| pentatricopeptide repeat-containing protein At5g39710-like isoform
           X1 [Dendrobium catenatum]
 gb|PKU82946.1| Pentatricopeptide repeat-containing protein [Dendrobium catenatum]
          Length = 628

 Score = 99.0 bits (245), Expect(2) = 4e-24
 Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 40/234 (17%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVR--------------------------------- 198
           S + YNCVLAGLC EG++K A  +Y R                                 
Sbjct: 210 SSITYNCVLAGLCGEGKLKSAKALYSRLKKIGFLPNVVTCTGFLSGLCRQNKIAEAQILF 269

Query: 199 --MVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGRWKELCGLCSNEVTYTALIGGLCDK 372
             M+++G++ +                F   + M    + CGL  N VTYT +I   C +
Sbjct: 270 YEMLENGLFPSVRTYSALIHGHASDGQFDKALEMIDEMQRCGLSPNVVTYTGIITAFCKE 329

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMD--CAR---XXXXXXXXXXXXX 537
           GR+DEA  ++++M+E+GL  NEFT          S  +D  C +                
Sbjct: 330 GRIDEAKRVVNMMKEQGLQPNEFT---------FSTLIDGFCRKGCLDDAVCIFRQMEDE 380

Query: 538 XFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
                IVAYN +LI GFC+   M++ MK+ QEI    SKPD+IT NTL++G C+
Sbjct: 381 GIVNKIVAYN-ILIRGFCQSGNMEEAMKLLQEIISNGSKPDLITFNTLMDGYCK 433



 Score = 42.0 bits (97), Expect(2) = 4e-24
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEML 100
           GP  +SR  SILID++C+SLN + GL+LI +ML
Sbjct: 171 GPCPNSRTFSILIDYVCKSLNSDIGLQLINQML 203


>ref|XP_020674215.1| pentatricopeptide repeat-containing protein At5g39710-like isoform
           X2 [Dendrobium catenatum]
          Length = 608

 Score = 99.0 bits (245), Expect(2) = 4e-24
 Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 40/234 (17%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVR--------------------------------- 198
           S + YNCVLAGLC EG++K A  +Y R                                 
Sbjct: 210 SSITYNCVLAGLCGEGKLKSAKALYSRLKKIGFLPNVVTCTGFLSGLCRQNKIAEAQILF 269

Query: 199 --MVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGRWKELCGLCSNEVTYTALIGGLCDK 372
             M+++G++ +                F   + M    + CGL  N VTYT +I   C +
Sbjct: 270 YEMLENGLFPSVRTYSALIHGHASDGQFDKALEMIDEMQRCGLSPNVVTYTGIITAFCKE 329

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMD--CAR---XXXXXXXXXXXXX 537
           GR+DEA  ++++M+E+GL  NEFT          S  +D  C +                
Sbjct: 330 GRIDEAKRVVNMMKEQGLQPNEFT---------FSTLIDGFCRKGCLDDAVCIFRQMEDE 380

Query: 538 XFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
                IVAYN +LI GFC+   M++ MK+ QEI    SKPD+IT NTL++G C+
Sbjct: 381 GIVNKIVAYN-ILIRGFCQSGNMEEAMKLLQEIISNGSKPDLITFNTLMDGYCK 433



 Score = 42.0 bits (97), Expect(2) = 4e-24
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEML 100
           GP  +SR  SILID++C+SLN + GL+LI +ML
Sbjct: 171 GPCPNSRTFSILIDYVCKSLNSDIGLQLINQML 203


>ref|XP_020674218.1| pentatricopeptide repeat-containing protein At5g39710-like isoform
           X3 [Dendrobium catenatum]
          Length = 507

 Score = 99.0 bits (245), Expect(2) = 4e-24
 Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 40/234 (17%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVR--------------------------------- 198
           S + YNCVLAGLC EG++K A  +Y R                                 
Sbjct: 210 SSITYNCVLAGLCGEGKLKSAKALYSRLKKIGFLPNVVTCTGFLSGLCRQNKIAEAQILF 269

Query: 199 --MVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGRWKELCGLCSNEVTYTALIGGLCDK 372
             M+++G++ +                F   + M    + CGL  N VTYT +I   C +
Sbjct: 270 YEMLENGLFPSVRTYSALIHGHASDGQFDKALEMIDEMQRCGLSPNVVTYTGIITAFCKE 329

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMD--CAR---XXXXXXXXXXXXX 537
           GR+DEA  ++++M+E+GL  NEFT          S  +D  C +                
Sbjct: 330 GRIDEAKRVVNMMKEQGLQPNEFT---------FSTLIDGFCRKGCLDDAVCIFRQMEDE 380

Query: 538 XFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
                IVAYN +LI GFC+   M++ MK+ QEI    SKPD+IT NTL++G C+
Sbjct: 381 GIVNKIVAYN-ILIRGFCQSGNMEEAMKLLQEIISNGSKPDLITFNTLMDGYCK 433



 Score = 42.0 bits (97), Expect(2) = 4e-24
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEML 100
           GP  +SR  SILID++C+SLN + GL+LI +ML
Sbjct: 171 GPCPNSRTFSILIDYVCKSLNSDIGLQLINQML 203


>ref|XP_017696777.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Phoenix dactylifera]
          Length = 531

 Score =  110 bits (274), Expect = 4e-23
 Identities = 84/249 (33%), Positives = 116/249 (46%), Gaps = 36/249 (14%)
 Frame = +1

Query: 61  ELGGRSTFDW*DAEWWPGSSVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN----- 225
           ELG R   +    +W+    V     V AGLC+EG+MKLA+ +Y R+VK GV  N     
Sbjct: 97  ELGMRLISEMLRLDWF---RVRLLTIVSAGLCSEGKMKLAMMLYTRIVKMGVKGNVVTYT 153

Query: 226 ---------------------WXXXXXXXXXXXXXXYFKGFVRMGRWKELCGL------- 321
                                                  G    G+ +E  G+       
Sbjct: 154 GFINGLCQERRLVEAKLLFDEMLETGFSPNVITYTALIHGLCEYGQLEEAMGMIEEMICR 213

Query: 322 -CS-NEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMDCA 495
            CS N VTYT ++GGLC +G V+EA  LLDVM +KG+  NEFT C      L +      
Sbjct: 214 GCSPNVVTYTGVMGGLCKEGMVEEALRLLDVMTQKGVDPNEFTYC-----TLLNGLCKRG 268

Query: 496 R-XXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITH 672
           R               FG ++VAYN +LI GFCKM  M++  K+ Q++ R  +KPD+IT+
Sbjct: 269 RIEEAIRFFSQMEERGFGDNVVAYN-ILICGFCKMGNMEEARKLLQDMKRKGTKPDVITY 327

Query: 673 NTLIEGRCQ 699
           NTL++G C+
Sbjct: 328 NTLMDGYCK 336


>gb|OAY68607.1| Pentatricopeptide repeat-containing protein, mitochondrial [Ananas
           comosus]
          Length = 391

 Score = 92.8 bits (229), Expect(2) = 8e-23
 Identities = 74/230 (32%), Positives = 101/230 (43%), Gaps = 35/230 (15%)
 Frame = +1

Query: 115 SSVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN----------------------- 225
           +SV AYNC+LAGLC EG+MKLA ++Y  MVK GV  N                       
Sbjct: 78  ASVPAYNCLLAGLCKEGKMKLAKSLYSMMVKLGVKGNVVSYTGFVSGLCREGGVIEAKLL 137

Query: 226 ---WXXXXXXXXXXXXXXYFKGFVRMGRWKE---------LCGLCSNEVTYTALIGGLCD 369
                                GF   G+  +         L GL  N VTYT ++ GLC 
Sbjct: 138 FDEMLEAGCSPNVVTYSALIHGFCMNGKVDDALEMMQRMVLKGLNPNVVTYTGVMLGLCK 197

Query: 370 KGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMDCARXXXXXXXXXXXXXXFGR 549
           +GRV +A  LL+ M  KG+  NEFT        L        R                R
Sbjct: 198 EGRVGKALELLEGMNLKGVKPNEFT-----FSILLDGLCKEGRLEEATQLFHQIEERGCR 252

Query: 550 SIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
           + V + +VL+SGFCKM  M++  ++ +E+      PD+IT NTL++G C+
Sbjct: 253 NKVVFYNVLVSGFCKMGKMEEARELIREMRDKSVLPDVITFNTLMDGFCK 302



 Score = 43.9 bits (102), Expect(2) = 8e-23
 Identities = 24/38 (63%), Positives = 26/38 (68%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGLV 115
           GP  +SR +SILIDF C S N E GLRLI EML   LV
Sbjct: 40  GPRPNSRTYSILIDFACGSSNSELGLRLIREMLQTCLV 77


>ref|XP_020102406.1| pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Ananas comosus]
          Length = 518

 Score = 92.8 bits (229), Expect(2) = 1e-22
 Identities = 74/229 (32%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN------------------------ 225
           SV AYNC+LAGLC EG+MKLA ++Y  MVK GV  N                        
Sbjct: 206 SVPAYNCLLAGLCKEGKMKLAKSLYSMMVKLGVKGNVVSYTGFVSGLCREGGVIEAKLLF 265

Query: 226 --WXXXXXXXXXXXXXXYFKGFVRMGRWKE---------LCGLCSNEVTYTALIGGLCDK 372
                               GF   G+  +         L GL  N VTYT ++ GLC +
Sbjct: 266 DEMLEAGCSPNVVTYSALIHGFCMNGKVDDALEMMQRMVLKGLNPNVVTYTGVMLGLCKE 325

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMDCARXXXXXXXXXXXXXXFGRS 552
           GRV +A  LL+ M  KG+  NEFT        L        R                R+
Sbjct: 326 GRVGKALELLEEMNLKGVKPNEFT-----FSILLDGLCKEGRLEEATQLFHQIEERGCRN 380

Query: 553 IVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
            V + +VL+SGFCKM  M++  ++ +E+      PD+IT NTL++G C+
Sbjct: 381 KVVFYNVLVSGFCKMGKMEEARELIREMRDKSVLPDVITFNTLMDGFCK 429



 Score = 43.5 bits (101), Expect(2) = 1e-22
 Identities = 24/38 (63%), Positives = 26/38 (68%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGLV 115
           GP  +SR +SILIDF C S N E GLRLI EML   LV
Sbjct: 167 GPRPNSRTYSILIDFACGSSNSELGLRLIREMLRTCLV 204


>gb|PKA54080.1| Pentatricopeptide repeat-containing protein [Apostasia shenzhenica]
          Length = 552

 Score = 91.3 bits (225), Expect(2) = 3e-21
 Identities = 71/234 (30%), Positives = 104/234 (44%), Gaps = 42/234 (17%)
 Frame = +1

Query: 124 VAYNCVLAGLCNEGRMKLALTIYVRMVKSGV--------------------------WAN 225
           ++YNCVLAGLC+EG+++ A  +Y RM+K G+                          ++ 
Sbjct: 204 ISYNCVLAGLCSEGKLESAQVLYSRMLKLGIMLNVVTYTGFINSFCRHKKLAEAKALFSE 263

Query: 226 WXXXXXXXXXXXXXXYFKGFVRMGRWKEL---------CGLCSNEVTYTALIGGLCDKGR 378
                             G    G+ +E          C L  N +TYT ++ G C   R
Sbjct: 264 MSENGLFPNVRTYSTLIHGLSLDGQLEEAMEKIQEMLRCRLSPNVITYTGIVLGFCKDER 323

Query: 379 VDEATSLLDVMREKGLGVNEFT*-------CK*QV*QLAS*WMDCARXXXXXXXXXXXXX 537
           V+EA  ++D+M  +GL  NEFT        CK    + A                     
Sbjct: 324 VEEAKRVVDLMIVQGLDPNEFTYSILIDGLCKGGRLEEA-----------VSTFRQMEAK 372

Query: 538 XFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
            F  +IVAYN  LISGFCK+  M++ +K+ +EITR    PD+IT NTL++G C+
Sbjct: 373 GFVTNIVAYN-TLISGFCKLGNMEEAIKLYEEITRKGFMPDVITFNTLMDGFCK 425



 Score = 40.0 bits (92), Expect(2) = 3e-21
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGLV 115
           GPS +SR  SI+ID+ C+S+N E  LRLI +M+   LV
Sbjct: 163 GPSPNSRTFSIVIDYACKSMNSEMCLRLITQMVKMDLV 200


>ref|XP_010271694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63400-like [Nelumbo nucifera]
 ref|XP_019055025.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g63400-like [Nelumbo nucifera]
          Length = 666

 Score = 79.0 bits (193), Expect(2) = 6e-19
 Identities = 70/236 (29%), Positives = 96/236 (40%), Gaps = 42/236 (17%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN------------------------ 225
           +V  YN VLAGLC EGR+K    ++ +M K G+  N                        
Sbjct: 282 TVDTYNNVLAGLCKEGRIKAGRILFSKMSKVGLRPNVRTYTALIDGLCQEKLIGEAKKLF 341

Query: 226 --WXXXXXXXXXXXXXXYFKGFVRMGRWKELC---------GLCSNEVTYTALIGGLCDK 372
                               G    G W E           G+  N  TYT ++  LC +
Sbjct: 342 YEMPEKGLSPNVHTYTVLILGLCGEGYWLEANEMILDMLSHGISPNVFTYTGVMKCLCKE 401

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*-------CK*QV*QLAS*WMDCARXXXXXXXXXXX 531
           G +  A  LLD+M ++G+  NEFT        CK +  + A                   
Sbjct: 402 GHLQAALRLLDLMTQQGVEPNEFTFNTLIDGLCKGERLEDA-----------LQIFHLME 450

Query: 532 XXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEGRCQ 699
              F  +IVAYN +LI  FCK+  M++  KI QEI     KPD+IT+NTLI+G C+
Sbjct: 451 ERGFQNNIVAYN-ILIDKFCKIGKMEEATKIYQEIKSKQYKPDVITYNTLIDGFCR 505



 Score = 44.7 bits (104), Expect(2) = 6e-19
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           GPS + R +SILI++LC SL   AGL+L+GEML  GL
Sbjct: 243 GPSPNDRTYSILINYLCSSLRSGAGLQLLGEMLQLGL 279


>ref|XP_008783963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Phoenix dactylifera]
          Length = 220

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 62/139 (44%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
 Frame = +1

Query: 292 MGRWKE-LC-GLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV* 465
           MG  +E LC GL  N VTYT +IG LC +GRVDEA  L D+M +KG G NEFT C     
Sbjct: 1   MGMIQEMLCRGLNPNVVTYTGVIGRLCKEGRVDEALRLFDMMIQKGAGPNEFTYC----- 55

Query: 466 QLAS*WMDCAR-XXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITR 642
            L +      R               F  ++VAYN +LI GFCKM  MD   K+ QEI R
Sbjct: 56  TLLNWLCKGGRLEEAIGLFCQMEERGFRNNLVAYN-ILICGFCKMGNMDKARKLLQEIRR 114

Query: 643 GVSKPDIITHNTLIEGRCQ 699
             +KP +IT+ TL++G C+
Sbjct: 115 KGTKPVVITYYTLMDGYCK 133


>ref|XP_020524426.1| pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Amborella trichopoda]
 gb|ERN08610.1| hypothetical protein AMTR_s00017p00176770 [Amborella trichopoda]
          Length = 658

 Score = 80.5 bits (197), Expect(2) = 5e-17
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 35/226 (15%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWAN------------------------ 225
           +VV YN +LAGLC +G+++ A  +Y  M   G+ +N                        
Sbjct: 216 TVVTYNTILAGLCKDGKIRAAKKLYKEMKNQGIRSNLLTYTALIDGLCKEGSLDEAKKLF 275

Query: 226 --WXXXXXXXXXXXXXXYFKGFVRMGRWKELC---------GLCSNEVTYTALIGGLCDK 372
                               G    G+W++           GL  N +TYT ++GGLC +
Sbjct: 276 YEMSEKNISPSVVTYSALVHGLCAKGQWRDATMILHEMLDRGLSPNVITYTGVLGGLCKE 335

Query: 373 GRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS*WMDCARXXXXXXXXXXXXXXFGRS 552
           GR+ +A  LLD M +KG+  N  T             +D A                G +
Sbjct: 336 GRLPQALRLLDSMFQKGIEPNAVTYTTLIDGLCKGGRLDDA----MRTFRLMEERGHGSN 391

Query: 553 IVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPDIITHNTLIEG 690
           +VAY+ VLI GFCK+  +++ M++ +E+    S+P +I +NTL++G
Sbjct: 392 LVAYS-VLIDGFCKIGKIEEAMELFRELVAKGSRPHVIIYNTLMDG 436



 Score = 36.6 bits (83), Expect(2) = 5e-17
 Identities = 20/37 (54%), Positives = 23/37 (62%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           GP  + R +SI+ID LC S   E  L LIGEML  GL
Sbjct: 177 GPFPNDRTYSIVIDGLCNSSRSELCLGLIGEMLQKGL 213


>ref|XP_020688297.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Dendrobium catenatum]
 ref|XP_020688298.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Dendrobium catenatum]
 ref|XP_020688299.1| pentatricopeptide repeat-containing protein At5g39710-like
           [Dendrobium catenatum]
 gb|PKU78141.1| Pentatricopeptide repeat-containing protein [Dendrobium catenatum]
          Length = 511

 Score = 69.3 bits (168), Expect(2) = 1e-13
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           +VV+Y   + GLC   ++  A  +   M ++GV  +                 +  + M 
Sbjct: 230 NVVSYTSFIDGLCRAKKLVEAKNMLYEMQENGVNPDILTFNSLIHGYCDNGQLEDVMEML 289

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT-------*CK* 456
            +    GL  N  T+T +IG LC  GR++E   +LDVM ++GL  ++F         CK 
Sbjct: 290 TFVASSGLHPNVNTFTIIIGALCKMGRMEEGLRVLDVMIQEGLSPDKFVYSTLVDGLCK- 348

Query: 457 QV*QLAS*WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEI 636
                     +                 F   +VAYN  LI G+CKM  M+   +I  EI
Sbjct: 349 ----------EGRLEDSLQFIHRMEESGFENDVVAYNS-LIDGYCKMGDMEGAKRIFDEI 397

Query: 637 TRGVSKPDIITHNTLIEGRCQ 699
            +   +P +IT+N  ++G C+
Sbjct: 398 RKKGFQPSVITYNAFMDGFCK 418



 Score = 36.2 bits (82), Expect(2) = 1e-13
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           GPS +S  + +LI  +C  L+ E GL LIGEML  GL
Sbjct: 156 GPSPNSFTYGVLIGCVCGCLDFEKGLGLIGEMLGFGL 192


>pdb|5I9D|A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U8a2 In Complex With Its Target Rna U8a2
          Length = 460

 Score = 80.9 bits (198), Expect(2) = 3e-13
 Identities = 54/193 (27%), Positives = 84/193 (43%)
 Frame = +1

Query: 121 VVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGR 300
           VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++  
Sbjct: 156 VVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSTLIDGLCKAGKLDEALKLFE 215

Query: 301 WKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS* 480
                G+  N VTY+ LI GLC  G++DEA  L + M EKG+  N               
Sbjct: 216 EMVEKGIKPNVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPN--------------- 260

Query: 481 WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPD 660
                                   +V YN  LI G CK   +D+ +K+ +E+     KPD
Sbjct: 261 ------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKPD 295

Query: 661 IITHNTLIEGRCQ 699
           ++T+NTLI+G C+
Sbjct: 296 VVTYNTLIDGLCK 308



 Score = 23.5 bits (49), Expect(2) = 3e-13
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           G   D   ++ LID LC++   +  L+L  EM+  G+
Sbjct: 81  GIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGI 117



 Score = 77.0 bits (188), Expect(2) = 2e-12
 Identities = 52/194 (26%), Positives = 84/194 (43%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           +VV Y+ ++ GLC  G++  AL ++  MV+ G+  N                    +++ 
Sbjct: 225 NVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYNTLIDGLCKAGKLDEALKLF 284

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS 477
                 G+  + VTY  LI GLC  G++DEA  L + M EKG+  +              
Sbjct: 285 EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD-------------- 330

Query: 478 *WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKP 657
                                    +V YN  LI G CK   +D+ +K+ +E+     KP
Sbjct: 331 -------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKP 364

Query: 658 DIITHNTLIEGRCQ 699
           D++T+NTLI+G C+
Sbjct: 365 DVVTYNTLIDGLCK 378



 Score = 24.6 bits (52), Expect(2) = 2e-12
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           G   D   +S LID LC++   +  L+L  EM+  G+
Sbjct: 186 GIKPDVVTYSTLIDGLCKAGKLDEALKLFEEMVEKGI 222



 Score = 75.1 bits (183), Expect = 3e-11
 Identities = 51/194 (26%), Positives = 84/194 (43%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           +VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++ 
Sbjct: 50  TVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLF 109

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS 477
                 G+  + VTY  LI GLC  G++DEA  L + M EKG+  +              
Sbjct: 110 EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD-------------- 155

Query: 478 *WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKP 657
                                    +V YN  LI G CK   +D+ +K+ +E+     KP
Sbjct: 156 -------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKP 189

Query: 658 DIITHNTLIEGRCQ 699
           D++T++TLI+G C+
Sbjct: 190 DVVTYSTLIDGLCK 203



 Score = 67.0 bits (162), Expect(2) = 3e-09
 Identities = 48/194 (24%), Positives = 80/194 (41%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           +VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++ 
Sbjct: 260 NVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLF 319

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS 477
                 G+  + VTY  LI GLC  G++DEA  L + M EKG+  +              
Sbjct: 320 EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD-------------- 365

Query: 478 *WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKP 657
                                    +V YN  LI G CK   +D+ +K+ +E+     KP
Sbjct: 366 -------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKP 399

Query: 658 DIITHNTLIEGRCQ 699
           D +T+  ++E  C+
Sbjct: 400 DELTYRRVVESYCR 413



 Score = 23.9 bits (50), Expect(2) = 3e-09
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 26  HSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           +S LID LC++   +  L+L  EM+  G+
Sbjct: 229 YSTLIDGLCKAGKLDEALKLFEEMVEKGI 257



 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 53/199 (26%), Positives = 75/199 (37%), Gaps = 2/199 (1%)
 Frame = +1

Query: 109 PGS--SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKG 282
           PGS   V AY  VL  L   GR + AL ++  + + GV                      
Sbjct: 10  PGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGV---------------------- 47

Query: 283 FVRMGRWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV 462
                            VTY  LI GLC  G++DEA  L + M EKG+  +         
Sbjct: 48  -------------APTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD--------- 85

Query: 463 *QLAS*WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITR 642
                                         +V YN  LI G CK   +D+ +K+ +E+  
Sbjct: 86  ------------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVE 114

Query: 643 GVSKPDIITHNTLIEGRCQ 699
              KPD++T+NTLI+G C+
Sbjct: 115 KGIKPDVVTYNTLIDGLCK 133


>gb|POE91079.1| pentatricopeptide repeat-containing protein [Quercus suber]
          Length = 716

 Score = 80.1 bits (196), Expect = 7e-13
 Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 9/203 (4%)
 Frame = +1

Query: 115 SSVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRM 294
           + VV Y+ +++GLCNEG       ++  M+  G++ N                     +M
Sbjct: 218 ADVVLYSAIISGLCNEGSFDRGKELFDEMLAKGIFPN---------VITYTCLMHCLCKM 268

Query: 295 GRWKELC---------GLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT* 447
           GRWKE           G+  + VTYT LI GLC  GR  +A  LLD+M +KG+  N    
Sbjct: 269 GRWKEATAMLNDMTEHGIRPDVVTYTGLIDGLCKDGRAKQAMDLLDLMLKKGVEPN---- 324

Query: 448 CK*QV*QLAS*WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKIS 627
                                               V YN V+I+G  K   + D  KI 
Sbjct: 325 -----------------------------------TVTYN-VIINGLSKEGGVGDAFKIL 348

Query: 628 QEITRGVSKPDIITHNTLIEGRC 696
           + +T+   KPD++T+NTL+ G C
Sbjct: 349 EMMTKKGKKPDVVTYNTLLVGLC 371


>ref|XP_023928169.1| pentatricopeptide repeat-containing protein At4g28010 [Quercus
           suber]
          Length = 759

 Score = 80.1 bits (196), Expect = 8e-13
 Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 9/203 (4%)
 Frame = +1

Query: 115 SSVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRM 294
           + VV Y+ +++GLCNEG       ++  M+  G++ N                     +M
Sbjct: 261 ADVVLYSAIISGLCNEGSFDRGKELFDEMLAKGIFPN---------VITYTCLMHCLCKM 311

Query: 295 GRWKELC---------GLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT* 447
           GRWKE           G+  + VTYT LI GLC  GR  +A  LLD+M +KG+  N    
Sbjct: 312 GRWKEATAMLNDMTEHGIRPDVVTYTGLIDGLCKDGRAKQAMDLLDLMLKKGVEPN---- 367

Query: 448 CK*QV*QLAS*WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKIS 627
                                               V YN V+I+G  K   + D  KI 
Sbjct: 368 -----------------------------------TVTYN-VIINGLSKEGGVGDAFKIL 391

Query: 628 QEITRGVSKPDIITHNTLIEGRC 696
           + +T+   KPD++T+NTL+ G C
Sbjct: 392 EMMTKKGKKPDVVTYNTLLVGLC 414


>pdb|5I9H|A Chain A, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U8g2 In Complex With Its Target Rna U8g2
          Length = 460

 Score = 78.6 bits (192), Expect(2) = 1e-12
 Identities = 56/193 (29%), Positives = 89/193 (46%)
 Frame = +1

Query: 121 VVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGR 300
           VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++  
Sbjct: 121 VVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFE 180

Query: 301 WKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS* 480
                G+  + VTYT LI GLC  G++DEA  L + M EKG+  +  T          + 
Sbjct: 181 EMVEKGIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAG 240

Query: 481 WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPD 660
            +D A                   +V YN  LI G CK   +D+ +K+ +E+     KPD
Sbjct: 241 KLDEA----LKLFEEMVEKGIKPDVVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKPD 295

Query: 661 IITHNTLIEGRCQ 699
           ++T+NTLI+G C+
Sbjct: 296 VVTYNTLIDGLCK 308



 Score = 23.5 bits (49), Expect(2) = 1e-12
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           G   D   ++ LID LC++   +  L+L  EM+  G+
Sbjct: 81  GIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGI 117



 Score = 74.3 bits (181), Expect(2) = 3e-11
 Identities = 51/193 (26%), Positives = 82/193 (42%)
 Frame = +1

Query: 121 VVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGR 300
           VV Y  ++ GLC  G++  AL ++  MV+ G+  +                    +++  
Sbjct: 226 VVTYTTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFE 285

Query: 301 WKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS* 480
                G+  + VTY  LI GLC  G++DEA  L + M EKG+  +               
Sbjct: 286 EMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD--------------- 330

Query: 481 WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPD 660
                                   +V YN  LI G CK   +D+ +K+ +E+     KPD
Sbjct: 331 ------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKPD 365

Query: 661 IITHNTLIEGRCQ 699
           ++T+NTLI+G C+
Sbjct: 366 VVTYNTLIDGLCK 378



 Score = 23.5 bits (49), Expect(2) = 3e-11
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           G   D   ++ LID LC++   +  L+L  EM+  G+
Sbjct: 151 GIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGI 187



 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 51/194 (26%), Positives = 83/194 (42%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           +VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++ 
Sbjct: 50  TVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLF 109

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS 477
                 G+  + VTY  LI GLC  G++DEA  L + M EKG+  +              
Sbjct: 110 EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD-------------- 155

Query: 478 *WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKP 657
                                    +V YN  LI G CK   +D+ +K+ +E+     KP
Sbjct: 156 -------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKP 189

Query: 658 DIITHNTLIEGRCQ 699
           D++T+ TLI+G C+
Sbjct: 190 DVVTYTTLIDGLCK 203



 Score = 66.6 bits (161), Expect(2) = 5e-09
 Identities = 48/193 (24%), Positives = 79/193 (40%)
 Frame = +1

Query: 121 VVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGR 300
           VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++  
Sbjct: 261 VVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFE 320

Query: 301 WKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS* 480
                G+  + VTY  LI GLC  G++DEA  L + M EKG+  +               
Sbjct: 321 EMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD--------------- 365

Query: 481 WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPD 660
                                   +V YN  LI G CK   +D+ +K+ +E+     KPD
Sbjct: 366 ------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKPD 400

Query: 661 IITHNTLIEGRCQ 699
            +T+  ++E  C+
Sbjct: 401 ELTYRRVVESYCR 413



 Score = 23.5 bits (49), Expect(2) = 5e-09
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           G   D   ++ LID LC++   +  L+L  EM+  G+
Sbjct: 186 GIKPDVVTYTTLIDGLCKAGKLDEALKLFEEMVEKGI 222



 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 53/199 (26%), Positives = 75/199 (37%), Gaps = 2/199 (1%)
 Frame = +1

Query: 109 PGS--SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKG 282
           PGS   V AY  VL  L   GR + AL ++  + + GV                      
Sbjct: 10  PGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGV---------------------- 47

Query: 283 FVRMGRWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV 462
                            VTY  LI GLC  G++DEA  L + M EKG+  +         
Sbjct: 48  -------------APTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD--------- 85

Query: 463 *QLAS*WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITR 642
                                         +V YN  LI G CK   +D+ +K+ +E+  
Sbjct: 86  ------------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVE 114

Query: 643 GVSKPDIITHNTLIEGRCQ 699
              KPD++T+NTLI+G C+
Sbjct: 115 KGIKPDVVTYNTLIDGLCK 133


>pdb|5I9G|C Chain C, Crystal Structure Of Designed Pentatricopeptide Repeat
           Protein Dppr- U8c2 In Complex With Its Target Rna U8c2
          Length = 460

 Score = 78.2 bits (191), Expect(2) = 2e-12
 Identities = 53/194 (27%), Positives = 84/194 (43%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           SVV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++ 
Sbjct: 225 SVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAGKLDEALKLF 284

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS 477
                 G+  + VTY  LI GLC  G++DEA  L + M EKG+  +              
Sbjct: 285 EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD-------------- 330

Query: 478 *WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKP 657
                                    +V YN  LI G CK   +D+ +K+ +E+     KP
Sbjct: 331 -------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKP 364

Query: 658 DIITHNTLIEGRCQ 699
           D++T+NTLI+G C+
Sbjct: 365 DVVTYNTLIDGLCK 378



 Score = 23.5 bits (49), Expect(2) = 2e-12
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           G   D   ++ LID LC++   +  L+L  EM+  G+
Sbjct: 151 GIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGI 187



 Score = 77.4 bits (189), Expect(2) = 3e-12
 Identities = 56/193 (29%), Positives = 89/193 (46%)
 Frame = +1

Query: 121 VVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMGR 300
           VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++  
Sbjct: 121 VVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFE 180

Query: 301 WKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS* 480
                G+  + VTY  LI GLC  G++DEA  L + M EKG+  +  T          + 
Sbjct: 181 EMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPSVVTYNTLIDGLCKAG 240

Query: 481 WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKPD 660
            +D A                  S+V YN  LI G CK   +D+ +K+ +E+     KPD
Sbjct: 241 KLDEA----LKLFEEMVEKGIKPSVVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKPD 295

Query: 661 IITHNTLIEGRCQ 699
           ++T+NTLI+G C+
Sbjct: 296 VVTYNTLIDGLCK 308



 Score = 23.5 bits (49), Expect(2) = 3e-12
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GPSSDSRRHSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           G   D   ++ LID LC++   +  L+L  EM+  G+
Sbjct: 81  GIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGI 117



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 52/194 (26%), Positives = 84/194 (43%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           +VV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++ 
Sbjct: 50  TVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLF 109

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS 477
                 G+  + VTY  LI GLC  G++DEA  L + M EKG+  +              
Sbjct: 110 EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD-------------- 155

Query: 478 *WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKP 657
                                    +V YN  LI G CK   +D+ +K+ +E+     KP
Sbjct: 156 -------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKP 189

Query: 658 DIITHNTLIEGRCQ 699
           D++T+NTLI+G C+
Sbjct: 190 DVVTYNTLIDGLCK 203



 Score = 68.2 bits (165), Expect(2) = 3e-09
 Identities = 49/194 (25%), Positives = 80/194 (41%)
 Frame = +1

Query: 118 SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKGFVRMG 297
           SVV YN ++ GLC  G++  AL ++  MV+ G+  +                    +++ 
Sbjct: 260 SVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLF 319

Query: 298 RWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV*QLAS 477
                 G+  + VTY  LI GLC  G++DEA  L + M EKG+  +              
Sbjct: 320 EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD-------------- 365

Query: 478 *WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITRGVSKP 657
                                    +V YN  LI G CK   +D+ +K+ +E+     KP
Sbjct: 366 -------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVEKGIKP 399

Query: 658 DIITHNTLIEGRCQ 699
           D +T+  ++E  C+
Sbjct: 400 DELTYRRVVESYCR 413



 Score = 22.7 bits (47), Expect(2) = 3e-09
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 26  HSILIDFLCRSLN*EAGLRLIGEMLSGGL 112
           ++ LID LC++   +  L+L  EM+  G+
Sbjct: 229 YNTLIDGLCKAGKLDEALKLFEEMVEKGI 257



 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 53/199 (26%), Positives = 75/199 (37%), Gaps = 2/199 (1%)
 Frame = +1

Query: 109 PGS--SVVAYNCVLAGLCNEGRMKLALTIYVRMVKSGVWANWXXXXXXXXXXXXXXYFKG 282
           PGS   V AY  VL  L   GR + AL ++  + + GV                      
Sbjct: 10  PGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGV---------------------- 47

Query: 283 FVRMGRWKELCGLCSNEVTYTALIGGLCDKGRVDEATSLLDVMREKGLGVNEFT*CK*QV 462
                            VTY  LI GLC  G++DEA  L + M EKG+  +         
Sbjct: 48  -------------APTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPD--------- 85

Query: 463 *QLAS*WMDCARXXXXXXXXXXXXXXFGRSIVAYNDVLISGFCKME*MDDTMKISQEITR 642
                                         +V YN  LI G CK   +D+ +K+ +E+  
Sbjct: 86  ------------------------------VVTYN-TLIDGLCKAGKLDEALKLFEEMVE 114

Query: 643 GVSKPDIITHNTLIEGRCQ 699
              KPD++T+NTLI+G C+
Sbjct: 115 KGIKPDVVTYNTLIDGLCK 133