BLASTX nr result
ID: Ophiopogon26_contig00034428
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00034428
(648 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009242020.1| NADH dehydrogenase subunit 4 (mitochondrion)... 84 3e-28
ref|YP_009242008.1| NADH dehydrogenase subunit 4 (mitochondrion)... 84 3e-28
gb|PNX83419.1| NADH-ubiquinone oxidoreductase chain [Trifolium p... 72 5e-13
emb|CAN71465.1| hypothetical protein VITISV_038986 [Vitis vinifera] 74 1e-11
gb|PKU59067.1| hypothetical protein MA16_Dca028078 [Dendrobium c... 53 2e-11
gb|EEF44034.1| conserved hypothetical protein [Ricinus communis] 64 2e-08
gb|PRQ15629.1| putative NADH:ubiquinone reductase (H(+)-transloc... 58 3e-06
>ref|YP_009242020.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
gb|AMQ23374.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
Length = 2992
Score = 84.0 bits (206), Expect(2) = 3e-28
Identities = 47/57 (82%), Positives = 49/57 (85%), Gaps = 1/57 (1%)
Frame = +2
Query: 224 KGSS*EVP-AKPKGRTSVRDRSMSRRLVLAASKSTDALCSGSLIRKIELGWGSTM*Y 391
+GSS EVP A+PKGRTSVR R MS RLVLAASKST ALCSGSLIRKIELGW STM Y
Sbjct: 1760 RGSSSEVPYAEPKGRTSVRHRCMSPRLVLAASKSTYALCSGSLIRKIELGWRSTMRY 1816
Score = 69.7 bits (169), Expect(2) = 3e-28
Identities = 40/66 (60%), Positives = 46/66 (69%)
Frame = +1
Query: 397 LVLPGEKDAQLKTEAGTVLYKISGVTDL*DYHRSDRAERPEKEVELESRMIGDNYLVRFG 576
+V PG KDAQLKTEAG+VL K+S VT ++ KEVELESRMIG YLVRFG
Sbjct: 1819 IVCPGGKDAQLKTEAGSVLLKMSEVTRSLRLPSIRQSGTTRKEVELESRMIGGYYLVRFG 1878
Query: 577 G*SAYS 594
G +AYS
Sbjct: 1879 GLAAYS 1884
>ref|YP_009242008.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
gb|AMQ23370.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
Length = 2992
Score = 84.0 bits (206), Expect(2) = 3e-28
Identities = 47/57 (82%), Positives = 49/57 (85%), Gaps = 1/57 (1%)
Frame = +2
Query: 224 KGSS*EVP-AKPKGRTSVRDRSMSRRLVLAASKSTDALCSGSLIRKIELGWGSTM*Y 391
+GSS EVP A+PKGRTSVR R MS RLVLAASKST ALCSGSLIRKIELGW STM Y
Sbjct: 1760 RGSSSEVPYAEPKGRTSVRHRCMSPRLVLAASKSTYALCSGSLIRKIELGWRSTMSY 1816
Score = 69.7 bits (169), Expect(2) = 3e-28
Identities = 40/66 (60%), Positives = 46/66 (69%)
Frame = +1
Query: 397 LVLPGEKDAQLKTEAGTVLYKISGVTDL*DYHRSDRAERPEKEVELESRMIGDNYLVRFG 576
+V PG KDAQLKTEAG+VL K+S VT ++ KEVELESRMIG YLVRFG
Sbjct: 1819 IVCPGGKDAQLKTEAGSVLLKMSEVTRSLRLPSIRQSGTTRKEVELESRMIGGYYLVRFG 1878
Query: 577 G*SAYS 594
G +AYS
Sbjct: 1879 GLAAYS 1884
>gb|PNX83419.1| NADH-ubiquinone oxidoreductase chain [Trifolium pratense]
gb|PNX85347.1| NADH-ubiquinone oxidoreductase chain [Trifolium pratense]
Length = 73
Score = 71.6 bits (174), Expect = 5e-13
Identities = 44/74 (59%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Frame = +2
Query: 173 EAGGGESLGLPIPIGPHKGSS*EVP---AKPKGRTSVRDRSMSRRLVLAASKSTDALCSG 343
E GG LGLPIPIGPHKG+ A+PKG TSVRDRSMS R + SG
Sbjct: 2 EGGGRLGLGLPIPIGPHKGTGAVERFHIAEPKGSTSVRDRSMSSR--PRCIEKYLCTISG 59
Query: 344 SLIRKIELGWGSTM 385
S IRKIELGWGSTM
Sbjct: 60 SPIRKIELGWGSTM 73
>emb|CAN71465.1| hypothetical protein VITISV_038986 [Vitis vinifera]
Length = 564
Score = 73.9 bits (180), Expect = 1e-11
Identities = 34/42 (80%), Positives = 34/42 (80%)
Frame = -1
Query: 129 FRPSKGTGPHFPPLGFCFPYLRAHCVSTGEKEVGFTE*EGGG 4
F KGTGPH PPLGF FPYLRAHCVSTGEKEV FTE EG G
Sbjct: 384 FLYEKGTGPHSPPLGFFFPYLRAHCVSTGEKEVDFTEEEGAG 425
Score = 63.9 bits (154), Expect = 3e-08
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -2
Query: 347 VNRNIVHRYSSMLRGRDGVTYYDHVQKFCPSA 252
VNRNIVHRYSSM RGRD VTYYDHVQK CPSA
Sbjct: 342 VNRNIVHRYSSMQRGRDDVTYYDHVQKCCPSA 373
Score = 60.8 bits (146), Expect = 3e-07
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = -3
Query: 619 EPNIPPTDRSTPITPRTVQDSYHLSYGFLT 530
+P IPPTDRSTPITPRTVQDSYHLSYG+L+
Sbjct: 298 QPKIPPTDRSTPITPRTVQDSYHLSYGWLS 327
>gb|PKU59067.1| hypothetical protein MA16_Dca028078 [Dendrobium catenatum]
Length = 67
Score = 52.8 bits (125), Expect(3) = 2e-11
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +2
Query: 452 CTKFRGLQISETTIDPTERNDQKKKLS 532
C KFRGLQIS+TTIDPTERNDQKKK S
Sbjct: 41 CKKFRGLQISDTTIDPTERNDQKKKWS 67
Score = 33.1 bits (74), Expect(3) = 2e-11
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1
Query: 334 MFRFTDKEDRVGVGVYDVI 390
MFRFT KED VGV VYDVI
Sbjct: 1 MFRFTYKEDIVGVEVYDVI 19
Score = 30.8 bits (68), Expect(3) = 2e-11
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 396 SRITGGERCATQNGSRN 446
S +T GERCATQNGSR+
Sbjct: 23 SSMTRGERCATQNGSRH 39
>gb|EEF44034.1| conserved hypothetical protein [Ricinus communis]
Length = 431
Score = 63.5 bits (153), Expect(2) = 2e-08
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +1
Query: 286 YVTPSRPRSIEEYRCTMFRFTDKEDRVGVGVYDVI 390
Y+T SRPR IEEY CTMFRFTDKEDRV VGVY+VI
Sbjct: 376 YITSSRPRCIEEYLCTMFRFTDKEDRVRVGVYNVI 410
Score = 23.1 bits (48), Expect(2) = 2e-08
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 395 ISYYRGRKMRNSKRKQEPCC 454
+ Y GR M RKQEP C
Sbjct: 411 LKYDPGRYMLTMGRKQEPLC 430
>gb|PRQ15629.1| putative NADH:ubiquinone reductase (H(+)-translocating)
(mitochondrion) [Rosa chinensis]
Length = 369
Score = 57.8 bits (138), Expect = 3e-06
Identities = 30/48 (62%), Positives = 35/48 (72%), Gaps = 3/48 (6%)
Frame = +2
Query: 182 GGESLGLPIPIGPHKGSS*EVP---AKPKGRTSVRDRSMSRRLVLAAS 316
GG+ LGLPIPIGPHKG+ A+PKG TS+RDRSMSRRL + S
Sbjct: 50 GGKGLGLPIPIGPHKGTGAVERFHIAEPKGSTSIRDRSMSRRLGIGGS 97