BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00033469
         (1103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKU77483.1| Retrovirus-related Pol polyprotein from transposo...   239   2e-67
gb|PKU65158.1| Retrovirus-related Pol polyprotein from transposo...   223   6e-63
gb|PKU59623.1| Retrovirus-related Pol polyprotein from transposo...   217   2e-62
gb|OMO99308.1| Integrase, catalytic core [Corchorus capsularis]       225   5e-62
gb|PKU72052.1| Retrovirus-related Pol polyprotein from transposo...   219   2e-60
gb|PKU64191.1| Retrovirus-related Pol polyprotein from transposo...   219   3e-60
gb|PKU81790.1| Retrovirus-related Pol polyprotein from transposo...   220   3e-60
gb|PKU66194.1| Retrovirus-related Pol polyprotein from transposo...   219   5e-60
gb|PKU59058.1| Retrovirus-related Pol polyprotein from transposo...   218   6e-60
gb|PKU83090.1| Retrovirus-related Pol polyprotein from transposo...   217   3e-59
gb|OMO61427.1| Zinc finger, CCCH-type [Corchorus capsularis]          217   3e-59
gb|PKU70861.1| Retrovirus-related Pol polyprotein from transposo...   216   3e-59
gb|PKU87026.1| Retrovirus-related Pol polyprotein from transposo...   216   5e-59
gb|PKU70959.1| Retrovirus-related Pol polyprotein from transposo...   214   7e-59
gb|PKU72406.1| Retrovirus-related Pol polyprotein from transposo...   216   7e-59
gb|AAC35532.1| contains similarity to proteases [Arabidopsis tha...   216   7e-59
emb|CAB40035.1| retrotransposon like protein [Arabidopsis thalia...   216   8e-59
gb|PKU73682.1| Retrovirus-related Pol polyprotein from transposo...   216   9e-59
gb|PKU66732.1| Retrovirus-related Pol polyprotein from transposo...   215   1e-58
gb|PKU68986.1| Retrovirus-related Pol polyprotein from transposo...   215   1e-58

>gb|PKU77483.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 994

 Score =  239 bits (609), Expect = 2e-67
 Identities = 135/344 (39%), Positives = 186/344 (54%), Gaps = 4/344 (1%)
 Frame = +2

Query: 80   SGVYCFRCGYPYHKANNC-FAPDSVIADTAQAFTAMHLTDQND*A-WYPDTGATNHMTAD 253
            + V C  CG P H A +C +  DS      QA+ A   TD +  A W+ D+GAT H+TA+
Sbjct: 296  AAVECQICGKPGHSAIHCWYRNDSSYNTPPQAYVA---TDSHQNADWFLDSGATEHLTAN 352

Query: 254  PTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVS 427
            PTQ++    Y+G   V VGNG  L I+H G   L  P  KL LSN+L VP L  NLLS+ 
Sbjct: 353  PTQLQNIQPYNGNSQVQVGNGQQLSIAHTGQGLLPTPSRKLQLSNILHVPHLSHNLLSIH 412

Query: 428  QYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXN 607
            + T DN C  L    GF IKD ++ ++LL G  H GLYPI ++                 
Sbjct: 413  KLTNDNSCFVLLDANGFAIKDSRTNKLLLHGPHHHGLYPIKISNPSSSDNFNTALLAAST 472

Query: 608  KMDYMTWHARLGHPSLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXXLPFTRRTNYTDQF 787
                 TWH RLGHPS S++  LS VL+                    LPF   T  T+Q 
Sbjct: 473  SS--ATWHQRLGHPSTSTLRLLSPVLSTSISSVSSHCNACSKAKCTRLPFPLSTTSTNQC 530

Query: 788  LHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQF 967
            L  +H+DVWGP+PS + + +RFY++ +D+ S++SW +PL  KS+V S FI F  ++  QF
Sbjct: 531  LELIHNDVWGPSPSLSMQSYRFYVVFIDDFSRYSWVYPLHHKSDVFSKFIHFQRMVEKQF 590

Query: 968  NRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
               +K ++TD G EYV++  +      GI    +CP TP+QNG+
Sbjct: 591  QTSIKILRTDGGGEYVNNHFKSHLTHHGIQHQITCPYTPQQNGV 634


>gb|PKU65158.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 692

 Score =  223 bits (567), Expect = 6e-63
 Identities = 128/357 (35%), Positives = 186/357 (52%), Gaps = 10/357 (2%)
 Frame = +2

Query: 56   NASPVGDSSGVYCFRCGYPYHKANNCFAPDS--VIADTAQAFTAMHLTDQND*AWYPDTG 229
            N S  G  S + C  C    H A+ C+   +   +  TA +   M  +D     WY D+G
Sbjct: 262  NNSKTGSKSSIICQICTKRGHSADVCWHRHNSKYVPPTANSQALMAASDITSTDWYLDSG 321

Query: 230  ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDL 403
            A++HMT +   +   + Y+G D V+VG+G  +PI+H G   L  P  KL LSN+L +PD+
Sbjct: 322  ASSHMTNNQDNMTQSSNYNGSDQVIVGDGRAIPIAHSGAGILPTPERKLQLSNLLHLPDI 381

Query: 404  KKNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXX 583
              NL+S+S   KDN     F   G+ +KDL++ ++LL+G    GLYPI +          
Sbjct: 382  SHNLISISNLVKDNNISISFDPNGYHVKDLQTHRVLLRGPCRAGLYPIKIKKFEQSKTAL 441

Query: 584  XXXXXXXNKMDYMTWHARLGHP------SLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXX 745
                   +      WH RLGHP      ++S  N    +++  N CN             
Sbjct: 442  NT-----SSRHLPNWHQRLGHPHQRILATISKQNPSLCIVDKNNICNSCNACKSHK---- 492

Query: 746  XLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVP 925
             L F R  N  +  L  LHSDVWGP+P  + +GF +YL+I+D+ S+++W FP   K+EV 
Sbjct: 493  -LEFPRSINRKNSPLALLHSDVWGPSPVQSQQGFLYYLLILDDYSRYAWVFPFSHKTEVS 551

Query: 926  SIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNG 1096
             IFI FIT +      +V+ V+TD G E+V+HK + F  ++GI    SCP TPEQNG
Sbjct: 552  QIFINFITFIEKYTKHQVQAVRTDGGTEFVNHKFQSFLTSKGIQHQRSCPYTPEQNG 608


>gb|PKU59623.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 519

 Score =  217 bits (553), Expect = 2e-62
 Identities = 123/351 (35%), Positives = 190/351 (54%), Gaps = 11/351 (3%)
 Frame = +2

Query: 80   SGVYCFRCGYPYHKANNCF---------APDSVIADTAQAFTAMHLTDQND*AWYPDTGA 232
            + V C  C    H A +C+         +P ++IA   ++ +           W+ DTGA
Sbjct: 111  NSVVCQICAKQGHSAVSCWYRAYLSYQQSPRALIAQEEKSTSG---------DWFLDTGA 161

Query: 233  TNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLK 406
            ++H+TAD TQ++    Y    +V VG+GS LPI++ G   L  P   L LS++L VP L 
Sbjct: 162  SSHLTADTTQLQSAQPYTSTSNVQVGDGSQLPIANSGKGILPTPSRVLQLSHILHVPKLT 221

Query: 407  KNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXX 586
             NL+SVS+  KDN C  +F   GF++KD ++ QILL+G  H GLYPI +           
Sbjct: 222  HNLISVSRLLKDNLCYIIFNKSGFLLKDSQTHQILLQGPSHHGLYPINLP---------- 271

Query: 587  XXXXXXNKMDYMTWHARLGHPSLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXXLPFTRR 766
                      ++ WH RLGHPS ++  +LS++L  F+  +               PF+  
Sbjct: 272  -LSVFTTPSTFIHWHMRLGHPSPTTQRRLSALLK-FSSPSKHHCDSCVRAKSHRFPFSLS 329

Query: 767  TNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFI 946
             + T Q L  LHSD+WGP+   +++ +++YL++VD+ ++F W FPL+ KS+V  +F  F 
Sbjct: 330  KSTTKQCLELLHSDIWGPSSILSSQCYKYYLLLVDDFTRFYWVFPLKSKSDVLPVFQNFK 389

Query: 947  TLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
             L+  QF  ++K  QTD+G E+++   ++F    GI    SCP TP+QNGL
Sbjct: 390  ILVETQFQTKIKQFQTDNGGEFINQSFKEFLANSGITHRLSCPYTPQQNGL 440


>gb|OMO99308.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1335

 Score =  225 bits (574), Expect = 5e-62
 Identities = 129/363 (35%), Positives = 188/363 (51%), Gaps = 30/363 (8%)
 Frame = +2

Query: 101  CGYPYHKANNCFAPDSVIADTAQAFTAMHLTD-----------------QND*AWYPDTG 229
            CGY Y+KA+          + + +F  +HL+                    +  W  D+G
Sbjct: 289  CGYRYNKADQ---------NLSTSFAGLHLSSATSHDGFPSTSSTSIGANGEPIWLADSG 339

Query: 230  ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDL 403
            AT+HMT++P+ ++  T Y G D V +G+G +L ISH G   L I  +K  L+N+L VP+L
Sbjct: 340  ATSHMTSNPSLLQQSTLYSGNDGVYIGDGKSLRISHIGDSSLCIGFSKFSLTNILFVPEL 399

Query: 404  KKNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXX 583
            K+NLLS++Q+TKDN C F  + WGFVIKDL++G++LL G   G LY I V          
Sbjct: 400  KENLLSIAQFTKDNNCGFFLFPWGFVIKDLRTGKVLLDGPVKGNLYMIPVKAAEKVVTKQ 459

Query: 584  XXXXXXX-----NKMDY--MTWHARLGHPSLSSMNQLSSVL----NYFNQCNXXXXXXXX 730
                        N  D   +TWH RLGHP+   ++QL S         + CN        
Sbjct: 460  LEQKQKQALFGGNNSDVSGVTWHRRLGHPAGKIISQLHSSKLISPKDVSFCNLVCEACQT 519

Query: 731  XXXXXXLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRR 910
                  LPF   T  T   L  +H D+WGP+P+    G+R+Y++ VD+ S++SW +PL++
Sbjct: 520  GKSKR-LPFGYSTRVTSNVLDLIHCDIWGPSPTATVSGYRYYILFVDDYSRYSWIYPLKQ 578

Query: 911  KSEVPSIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQ 1090
            +S+    F  F +++ NQF  ++KF Q D  +E V    + F    GI    SCP T EQ
Sbjct: 579  RSDSLVCFQTFKSMVENQFGHKIKFFQCDGAKELVEGVFKQFLDGHGISLRISCPHTHEQ 638

Query: 1091 NGL 1099
            NGL
Sbjct: 639  NGL 641


>gb|PKU72052.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 956

 Score =  219 bits (558), Expect = 2e-60
 Identities = 121/343 (35%), Positives = 179/343 (52%), Gaps = 3/343 (0%)
 Frame = +2

Query: 80   SGVYCFRCGYPYHKANNC-FAPDSVIADTAQAFTAMHLTDQND*AWYPDTGATNHMTADP 256
            S V C  C    H A  C +  D       QAF +      +D  W+ DTGAT+H+T++ 
Sbjct: 93   SSVQCQICNRVGHSAFQCWYRTDLNYQPVQQAFLSADAPSSDD--WFLDTGATSHLTSNL 150

Query: 257  TQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQ 430
              ++    Y G   + VGNG  LPI++ G   L  P  KL LS +L VP L  NLLSV++
Sbjct: 151  QHLQTPQTYTGSSQIQVGNGQLLPIANSGQGLLPTPSRKLQLSQILHVPHLSHNLLSVNK 210

Query: 431  YTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNK 610
             T +N C  +F+  GF IKD ++ QILL+G    GLYPI + P                 
Sbjct: 211  LTNENSCFIVFHANGFFIKDARTNQILLQGPCRQGLYPIELRPAASYSSTTHSTALHTKM 270

Query: 611  MDYMTWHARLGHPSLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXXLPFTRRTNYTDQFL 790
            +D +  H RLGHPS S++  LS+        +              LPF+   + T   L
Sbjct: 271  IDPVLLHQRLGHPSPSTLQLLSAYFPTKRLVSSFHCSACLRAKSHRLPFSLSASKTKNVL 330

Query: 791  HTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFN 970
              +H DVWGP+P  +  G+++YL+ VD+ + +SW +PL+ KSE  + F+ F + + NQFN
Sbjct: 331  ELIHCDVWGPSPIVSNNGYKYYLLFVDDFTHYSWVYPLQLKSEAFTQFLHFKSTVENQFN 390

Query: 971  RRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
            + +K ++TD G E+V+     +    GI+   +CP TP+QNG+
Sbjct: 391  KHIKTLRTDGGGEFVNKIFNAYLSRAGIVHQLTCPYTPQQNGV 433


>gb|PKU64191.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 962

 Score =  219 bits (557), Expect = 3e-60
 Identities = 125/339 (36%), Positives = 174/339 (51%), Gaps = 3/339 (0%)
 Frame = +2

Query: 92   CFRCGYPYHKANNC-FAPDSVIADTAQAFTAMHLTDQND*AWYPDTGATNHMTADPTQVE 268
            C  CG P H A +C +  D+      QA+         D  WY D+GAT H+T+ P  + 
Sbjct: 273  CKICGKPRHSAIHCWYRHDTSYTTLPQAYITTDSAPAVD--WYLDSGATEHLTSTPAHLN 330

Query: 269  GKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKD 442
                Y G   V VGNG  LPI++ G   L  P+ KLHL +VL  P L  NLLSV + T D
Sbjct: 331  NIQHYTGSSQVQVGNGQQLPIANTGQGLLPTPYRKLHLPHVLHFPHLFHNLLSVHKLTND 390

Query: 443  NKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNKMDYM 622
            N C  L    GF IKD ++ + LL G    GLYPI +                 +     
Sbjct: 391  NSCFVLLDAHGFAIKDSRTNKTLLHGPTQHGLYPIKLPQSSASSITALASSTAPS----F 446

Query: 623  TWHARLGHPSLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXXLPFTRRTNYTDQFLHTLH 802
             WH RLGHPS S    LSS+L +                   LPF+   + T + L  +H
Sbjct: 447  IWHQRLGHPSSSIQQGLSSLLLFSPSFVNLHCNACSQAKCTRLPFSLSQSTTTKCLELVH 506

Query: 803  SDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVK 982
            SDVWG +P+P+ + + +Y++ +D+ S+++W +PL  KSEV +IF+QF  L+  QF   +K
Sbjct: 507  SDVWGSSPTPSMQAYLYYVVFIDDYSRYTWIYPLCHKSEVYTIFLQFQALVEKQFQHPIK 566

Query: 983  FVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
             ++TD G EYV+   ++     GII   SCP TP+QNG+
Sbjct: 567  ILRTDGGGEYVNIIFKNHLTKSGIIYQISCPYTPQQNGV 605


>gb|PKU81790.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1372

 Score =  220 bits (560), Expect = 3e-60
 Identities = 127/357 (35%), Positives = 188/357 (52%), Gaps = 10/357 (2%)
 Frame = +2

Query: 56   NASPVGDSSGVYCFRCGYPYHKANNCFAPDS--VIADTAQAFTAMHLTDQND*AWYPDTG 229
            N S  G  S + C  C    H A+ C+   +   +  TA +   M  +D     WY D+G
Sbjct: 262  NNSKPGSKSSIICQICTKRGHSADICWHRHNSKYVPPTANSQALMAASDITSTDWYLDSG 321

Query: 230  ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDL 403
            A++HMT +   +   + Y+G D V+VG+G  +PI+H G   L  P  KL LSN+L +P++
Sbjct: 322  ASSHMTNNQDNMTQSSNYNGSDQVIVGDGRAIPIAHSGAGILPTPERKLQLSNLLHLPNI 381

Query: 404  KKNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXX 583
              NL+S+S   KDN     F   G+ +KDL++ ++LL+G    GLYPI +          
Sbjct: 382  SHNLISISNLVKDNNISISFDPNGYHVKDLQTHRVLLQGPCRAGLYPIKIKKSELSKTAL 441

Query: 584  XXXXXXXNKMDYMTWHARLGHP------SLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXX 745
                          WH RLGHP      ++S  N    +++  N CN             
Sbjct: 442  NTSLRHSPN-----WHQRLGHPHQRILATISKQNPSLCIVDRNNICNSCNACKSHK---- 492

Query: 746  XLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVP 925
             L F+R  N  +  L  LHSDVWGP+P  + +GF++YL+I+D+ S+++W FP   K+EVP
Sbjct: 493  -LEFSRSINRKNSPLALLHSDVWGPSPVQSQQGFQYYLLILDDYSRYAWVFPFSYKTEVP 551

Query: 926  SIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNG 1096
             IFI FIT +      +V+ V+TD G E+V++K + F  ++GI    SCP TPEQNG
Sbjct: 552  QIFINFITFIEKYTKHQVQAVRTDGGTEFVNYKFQTFLTSKGIQHQRSCPYTPEQNG 608


>gb|PKU66194.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1353

 Score =  219 bits (559), Expect = 5e-60
 Identities = 134/360 (37%), Positives = 187/360 (51%), Gaps = 12/360 (3%)
 Frame = +2

Query: 56   NASPVG---DSSGVYCFRCGYPYHKANNCF--APDSVIADTAQAFTAMHLTDQND*A--- 211
            NA+P      S  V C  C    H+A+ C+     + + +  Q+ +   L   ND +   
Sbjct: 254  NANPAAKAPQSMSVQCQICKKKGHEADTCWHRLNANYVPNQQQSKSTNALIASNDVSSGV 313

Query: 212  -WYPDTGATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSN 382
             WY D+GA++HMT     +     Y+G D+V +G+G ++PI+H G   L  P +KL LS 
Sbjct: 314  DWYIDSGASSHMTNSTDHLTTYNPYYGNDTVTIGDGRSVPIAHTGSGILPTPASKLLLSQ 373

Query: 383  VLVVPDLKKNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPX 562
            +L +P L  NLLS+S   KDN     F   GFV KD K+ QI+L G  H GLY I  A  
Sbjct: 374  LLHIPSLSYNLLSISNLVKDNNISITFDANGFVFKDPKTDQIILSGPCHKGLYKINSAKS 433

Query: 563  XXXXXXXXXXXXXXNKMDYMTWHARLGHPSLSSMNQLSSVLNYFNQC-NXXXXXXXXXXX 739
                          +      WH RLGHP    + Q+S      +   N           
Sbjct: 434  QVNPAALSATTFSVD------WHKRLGHPHRRILQQISRHHPSIHLSPNVSTCTSCLSCK 487

Query: 740  XXXLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSE 919
               LPF R ++ T+  L  +HSDVWGP+P P+  G+ +Y+I VD+ S+F W FPL+ K E
Sbjct: 488  GHKLPFERSSSSTNFPLELVHSDVWGPSPVPSHLGYNYYVIFVDDFSRFVWLFPLQSKHE 547

Query: 920  VPSIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
            V  IFI F   +  Q NR++K ++TD G E+V+HK ++F  T GI+   SCP TPEQNGL
Sbjct: 548  VTDIFINFTHFIERQTNRKLKIIRTDGGGEFVNHKFQNFTRTAGILHQTSCPYTPEQNGL 607


>gb|PKU59058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 969

 Score =  218 bits (555), Expect = 6e-60
 Identities = 123/332 (37%), Positives = 177/332 (53%), Gaps = 3/332 (0%)
 Frame = +2

Query: 113  YHKANNCFAPDSVIADTAQAFTAMHLTDQND*AWYPDTGATNHMTADPTQVEGKTFYHGQ 292
            +H+ N  + P S  +D  +   A   T+ +   W+ D+GA+ HMT     +   + Y G 
Sbjct: 292  WHRLNVNYIPQSTSSDPVKGLAAT-TTNSHPQEWFLDSGASAHMTNASDNLSNPSIYRGS 350

Query: 293  DSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNKCCFLFY 466
            +SV +G+G  L I+  G+  L  P+ KL LSN+L +P++  NLLS+S   +DNK    F 
Sbjct: 351  ESVTIGDGRNLSIAQSGNGILPTPNRKLILSNLLHIPNISYNLLSISTLVRDNKISITFT 410

Query: 467  LWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNKMDYMTWHARLGH 646
              GFV+KDL +   LL G    GLYPI  +                NK    TWH RLGH
Sbjct: 411  PNGFVMKDLMTDNTLLHGPCKEGLYPIASSQPIISALSA-------NKAPSATWHNRLGH 463

Query: 647  PSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXXXLPFTRRTNYTDQFLHTLHSDVWGPA 823
            P+  ++  L+S+  + +                   PF R +N     L  LHSDVWGP+
Sbjct: 464  PNNQTLRLLASMQPHLHISVKDLECISCKSCKDHKFPFARSSNRKFNPLELLHSDVWGPS 523

Query: 824  PSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSG 1003
            P  + + FR+Y+  VD+ SQF+W FPL+ KSEV   F++   L+ NQFN ++K ++TD G
Sbjct: 524  PIASNQEFRYYVSFVDDYSQFTWLFPLKNKSEVFETFVKLKQLIENQFNSKIKILRTDGG 583

Query: 1004 EEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
             EY+++  R F  T GI    SCP TPEQNG+
Sbjct: 584  AEYINNMFRKFLETNGIEHQRSCPYTPEQNGV 615


>gb|PKU83090.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1360

 Score =  217 bits (553), Expect = 3e-59
 Identities = 121/332 (36%), Positives = 176/332 (53%), Gaps = 3/332 (0%)
 Frame = +2

Query: 113  YHKANNCFAPDSVIADTAQAFTAMHLTDQND*AWYPDTGATNHMTADPTQVEGKTFYHGQ 292
            +H+ N  + P S   +TA A T    T      W+ D+GA++H+T     +     Y+G 
Sbjct: 291  WHRLNENYVPRS--RNTALAATQERPTSN----WFLDSGASSHLTNSLDNLSVNDPYNGS 344

Query: 293  DSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNKCCFLFY 466
            DSV +G+G ++ I+H G   L   H KL+L+ +L +P+LK NLLS+S+ T+DN  C +F 
Sbjct: 345  DSVTLGDGRSMSIAHSGSGLLNTTHRKLNLAKILHIPELKYNLLSISKLTRDNNICIVFE 404

Query: 467  LWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNKMDYMTWHARLGH 646
              GFV KD+++ Q LL+G  H GLYPI + P                K   M WH RLGH
Sbjct: 405  PNGFVFKDIQTQQTLLRGPCHDGLYPIQLHPAKTTTSALTAI-----KKPMMPWHNRLGH 459

Query: 647  PSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXXXLPFTRRTNYTDQFLHTLHSDVWGPA 823
            P    +N +S      N   N              LPF    N     L  +HSDVWGPA
Sbjct: 460  PHFKILNLVSKCNPCLNIDFNKFSCSSCILAKGHKLPFESSENRRHIPLEVVHSDVWGPA 519

Query: 824  PSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSG 1003
            P  + +G+RFY++ +D+ ++F+W +P++ K+EV SIF  F   +    + ++K +++D G
Sbjct: 520  PVESLQGYRFYVLFIDDCTRFTWLYPMKHKNEVTSIFTNFKNYVEKLTSYQIKCLRSDGG 579

Query: 1004 EEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
             EY +H    F    GI    SCP TPEQNGL
Sbjct: 580  TEYTNHGFTQFLTANGITHQISCPYTPEQNGL 611


>gb|OMO61427.1| Zinc finger, CCCH-type [Corchorus capsularis]
          Length = 1996

 Score =  217 bits (553), Expect = 3e-59
 Identities = 128/363 (35%), Positives = 183/363 (50%), Gaps = 15/363 (4%)
 Frame = +2

Query: 56   NASPVGDSSGVYCFRCGYPYHKANNCFAP--DSVIADTAQAFTAMHLTDQND*AWYPDTG 229
            N+      + + C  C  P H A +C+     +  ++ A+   AM L    D +W+PDT 
Sbjct: 244  NSQDDSGKTNIVCQICKLPKHTALDCYNRFNHAYQSEKARQAMAMKLDGPIDNSWFPDTA 303

Query: 230  ATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGHLTIP--HTKLHLSNVLVVPDL 403
            A+ HMTADP  +   + YHG D +L+G+GS L ISH G + IP     L L+NVLVVP++
Sbjct: 304  ASAHMTADPGILSSLSQYHGCDKILIGDGSLLDISHTGTMDIPVLDGNLQLNNVLVVPEI 363

Query: 404  KKNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXX 583
            KKNLLS  Q T D      F   G VIKD ++G+++ KGSK  G+Y +G           
Sbjct: 364  KKNLLSAGQLTDDYPYTCEFSSAGVVIKDRETGKMIAKGSKQDGVYALGTKEKAAFFSTR 423

Query: 584  XXXXXXXNKMDYMTWHARLGHPS-----LSSMNQL------SSVLNYFNQCNXXXXXXXX 730
                          WH RLGHP      L   N+L      + V ++ + C         
Sbjct: 424  FKTASDE------VWHQRLGHPQPKVVELLKKNKLITSTSGNKVEHFCDSCQMAKACR-- 475

Query: 731  XXXXXXLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRR 910
                  LPF     + D  +  +H D+WG AP  + + F++Y+I VDE S+F+WYFPL+ 
Sbjct: 476  ------LPFILSNEFCDTPMDVIHCDLWGAAPVASFQKFKYYVIFVDEYSRFTWYFPLKH 529

Query: 911  KSEVPSIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQ 1090
            KS+    F+ F   + NQF +++K  Q D G E+   +   F    GI   ++CP TPEQ
Sbjct: 530  KSDFFQCFLNFHAYVENQFGKKIKVFQCDEGGEFTDGRFVQFLQNNGIKLQYACPKTPEQ 589

Query: 1091 NGL 1099
            NGL
Sbjct: 590  NGL 592


>gb|PKU70861.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1047

 Score =  216 bits (551), Expect = 3e-59
 Identities = 121/333 (36%), Positives = 178/333 (53%), Gaps = 4/333 (1%)
 Frame = +2

Query: 113  YHKANNCFAPDSVIADTAQAFTAMHLTD-QND*AWYPDTGATNHMTADPTQVEGKTFYHG 289
            +H+ N  + P        +AF+A   TD +N   WY D+GA+ HMT +   +   T Y G
Sbjct: 286  WHRLNINYVPSQPHDKQPKAFSAT--TDSKNPNEWYLDSGASAHMTNNTDNLTTSTSYQG 343

Query: 290  QDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNKCCFLF 463
             DS+ +G+GS +PI+H G   L  P  KL LSN+L +P++  NL+S+S   KDN     F
Sbjct: 344  SDSITIGDGSHIPIAHSGTGILPTPFRKLKLSNLLHIPNISYNLVSISNLVKDNNISITF 403

Query: 464  YLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNKMDYMTWHARLG 643
               GF +KD+ +G I+L+G    GLYPI  +                ++     WH RLG
Sbjct: 404  NPNGFTMKDMTTGCIILRGPYKDGLYPIATS-------HTSQTALQASRSSSAVWHNRLG 456

Query: 644  HPSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXXXLPFTRRTNYTDQFLHTLHSDVWGP 820
            HP+  +M  ++S     +   +              +PF++  N     L  LHSDVWGP
Sbjct: 457  HPNQRTMRLIASAYPQLHISISSFQCVACSSCKGHKMPFSKSCNRMKTPLALLHSDVWGP 516

Query: 821  APSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDS 1000
            +P  + +GFR+Y+  +D+ S+++W FP   KS+VP IFI F T + NQ N ++K ++TD 
Sbjct: 517  SPVTSNQGFRYYVTFIDDFSRYTWIFPCSNKSDVPHIFINFKTFIENQTNYKIKILRTDG 576

Query: 1001 GEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
            G EY +  L  F  + GI    SCP TPEQNG+
Sbjct: 577  GTEYRNITLSKFLSSNGIQHQLSCPYTPEQNGV 609


>gb|PKU87026.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1273

 Score =  216 bits (551), Expect = 5e-59
 Identities = 123/358 (34%), Positives = 183/358 (51%), Gaps = 17/358 (4%)
 Frame = +2

Query: 77   SSGVYCFRCGYPYHKANNCF--------------APDSVIADTAQAFTAMHLTDQND*AW 214
            +S + C  C    H   NC+              +P +++A + QA T           W
Sbjct: 250  TSSIICQICNKKGHTTANCWHRMNSQYVPKSGNSSPKAMVAQSEQATTD----------W 299

Query: 215  YPDTGATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVL 388
            Y D+GA++H+T     ++    Y   D + VG+G ++PI+H G   L  P  KL+LS +L
Sbjct: 300  YLDSGASSHLTNSLNNLQISAPYTRNDGITVGDGRSVPIAHSGAGILPTPSRKLYLSQLL 359

Query: 389  VVPDLKKNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXX 568
             +P L  NLLS+SQ T+DN    +F   GF +KDLK+ Q+LLKG  H GLYPI       
Sbjct: 360  HIPKLHYNLLSISQLTRDNNISIVFDPLGFTLKDLKTNQVLLKGPCHKGLYPINSLSSGA 419

Query: 569  XXXXXXXXXXXXNKMDYMTWHARLGHPSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXX 745
                        N      WH RLGHP   ++  ++      N   +             
Sbjct: 420  TSTALSATANGSN-----IWHQRLGHPHKRALETIAKSNPSLNISVSDSICNSCRANKGH 474

Query: 746  XLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVP 925
             L F +  N +++ L  +HSDVWGP+P  + + F++Y++ VD+ S+F+W FP+  KSEV 
Sbjct: 475  KLLFEKSENRSNKILELIHSDVWGPSPVTSNQSFQYYVLFVDDFSRFTWLFPMIHKSEVT 534

Query: 926  SIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
            +IFI F   + N  + ++K ++TD G EYV+H L+ F +  GI    SCP TPEQNG+
Sbjct: 535  NIFINFKAKIENLTSHKIKCLRTDGGTEYVNHHLKQFLIQHGIRHQISCPYTPEQNGM 592


>gb|PKU70959.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 863

 Score =  214 bits (545), Expect = 7e-59
 Identities = 124/348 (35%), Positives = 186/348 (53%), Gaps = 13/348 (3%)
 Frame = +2

Query: 92   CFRCGYPYHKANNCFAP--DSVIADTAQAFTAMHLTDQND*A-WYPDTGATNHMTADPTQ 262
            C  C    H ANNC+    ++ +    +  TA+++T+ N    WY D+GAT H+T D + 
Sbjct: 273  CQICNKKGHSANNCWHRYNNNYVPPPPKNNTALNVTNDNQNPDWYLDSGATAHLTNDISN 332

Query: 263  VE-GKTF-YHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQ 430
            +  G    Y+G D++ +G+GST+PI+H G   L  P  KL LS +L +P +   LLS+  
Sbjct: 333  LTLGDAIPYNGDDNIQIGDGSTIPIAHKGSGLLPTPTRKLILSQLLHIPQISHKLLSIYH 392

Query: 431  YTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNK 610
             TKDNK    F  +GF+IKD K+ Q LL+G    GLYPI                     
Sbjct: 393  LTKDNKIAITFDEFGFLIKDTKTNQTLLQGPSRKGLYPIPTTSHKLKPTLIAIH------ 446

Query: 611  MDYMTWHARLGHPSLSSMNQLSS------VLNYFNQCNXXXXXXXXXXXXXXLPFTRRTN 772
                TWH RLGHP++ +M  +S+      +    + C               L F    +
Sbjct: 447  QSSTTWHNRLGHPNIRTMTMISNQNHTLQIPKPIDNCTACKMAKSHR-----LQFPVSNS 501

Query: 773  YTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITL 952
             +   L  LHSDVWGPAP  + +G+++YL+++D+ S+F+W FP++ K EV   FI F T+
Sbjct: 502  RSHVLLELLHSDVWGPAPITSYQGYKYYLLLLDDYSRFTWVFPIKSKCEVADTFIMFHTM 561

Query: 953  MHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNG 1096
            +  QF  +VK +++D G EY++  L+++    GI+   SCP TPEQNG
Sbjct: 562  IEKQFPYKVKQLRSDGGSEYINKTLQNYLQKHGIVHQISCPYTPEQNG 609


>gb|PKU72406.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1246

 Score =  216 bits (550), Expect = 7e-59
 Identities = 124/336 (36%), Positives = 178/336 (52%), Gaps = 8/336 (2%)
 Frame = +2

Query: 116  HKANNCFAPDSVIADTAQAFTAMHLTDQND*AWYPDTGATNHMTADPTQVEGKTFYHGQD 295
            H AN      S    TA   TA    D +   WY D+GA+ HMT     ++  T Y+G D
Sbjct: 292  HNANYITPKPSSEQPTAMLATA----DTSSTDWYLDSGASTHMTNRFENLDQATTYNGSD 347

Query: 296  SVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNKCCFLFYL 469
             V+VG+G T+PI+H G   L  P  KL L+N++  P++  NL+S+S     N+    F  
Sbjct: 348  HVIVGDGRTIPIAHSGSGILPTPDRKLFLTNLIHTPEISHNLISISNLVSTNQISITFSP 407

Query: 470  WGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNKMDYMTWHARLGHP 649
             G+V KDL+S +I+L+G    GLYP+ +                  + + + WH RL HP
Sbjct: 408  NGYVFKDLQSNKIILQGPCKNGLYPLTIR-----NDPAQHSAMTATQREGINWHQRLVHP 462

Query: 650  SL------SSMNQLSSVLNYFNQCNXXXXXXXXXXXXXXLPFTRRTNYTDQFLHTLHSDV 811
             L      +S N L  +  +FN C               LPF R  + T + L  +HSDV
Sbjct: 463  HLRITQTIASTNPLLHIPKFFNSC-----VHCNVCKSHKLPFERSVHRTMKPLDLIHSDV 517

Query: 812  WGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQ 991
            WGP+P  +   FR+YL+ VD+ S+F W FPL  KS+   IFI FIT +  Q +R++K ++
Sbjct: 518  WGPSPVSSRNAFRYYLLCVDDFSRFCWLFPLAYKSDATRIFIDFITFIERQTDRKIKALR 577

Query: 992  TDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
            TD G E+++H  + F  +QGI+   SCP TPEQNG+
Sbjct: 578  TDGGGEFINHTFKIFLQSQGILHQTSCPYTPEQNGV 613


>gb|AAC35532.1| contains similarity to proteases [Arabidopsis thaliana]
          Length = 1392

 Score =  216 bits (550), Expect = 7e-59
 Identities = 127/352 (36%), Positives = 181/352 (51%), Gaps = 9/352 (2%)
 Frame = +2

Query: 71   GDSSGVYCFRCGYPYHKANNC---FAPDSVIADTAQAFTAMHLTDQND*A---WYPDTGA 232
            G+ S   C  C    H A  C   F  + +  D   AF AM ++DQN  +   W PD+ A
Sbjct: 274  GNGSKPTCQICRKYGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQNQASSHEWLPDSAA 333

Query: 233  TNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLK 406
            T H+T     ++    Y G DSV+VGNG  LPI+H G   L I    L L +VLV P + 
Sbjct: 334  TAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVCPGIT 393

Query: 407  KNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXX 586
            K+LLSVS+ T D  C F F     VIKD ++ Q+L +G+KH GLY +   P         
Sbjct: 394  KSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDVPFQTYYSTRQ 453

Query: 587  XXXXXXNKMDYMTWHARLGHPSLSSMNQL-SSVLNYFNQCNXXXXXXXXXXXXXXLPFTR 763
                     D   WH RLGHP+   +  L  +     N+ +              LPF  
Sbjct: 454  ------QSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVA 507

Query: 764  RTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQF 943
                + + L  +H D+WGPAP  + +GF++Y+I +D  S+F+W++PL+ KS+  S+F+ F
Sbjct: 508  SEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLF 567

Query: 944  ITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
              L+ NQ+  ++   Q D G E+VS+K      + GI QL SCP TP+QNG+
Sbjct: 568  QQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGI 619


>emb|CAB40035.1| retrotransposon like protein [Arabidopsis thaliana]
 emb|CAB81170.1| retrotransposon like protein [Arabidopsis thaliana]
          Length = 1515

 Score =  216 bits (550), Expect = 8e-59
 Identities = 127/352 (36%), Positives = 181/352 (51%), Gaps = 9/352 (2%)
 Frame = +2

Query: 71   GDSSGVYCFRCGYPYHKANNC---FAPDSVIADTAQAFTAMHLTDQND*A---WYPDTGA 232
            G+ S   C  C    H A  C   F  + +  D   AF AM ++DQN  +   W PD+ A
Sbjct: 271  GNGSKPTCQICRKYGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQNQASSHEWLPDSAA 330

Query: 233  TNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLK 406
            T H+T     ++    Y G DSV+VGNG  LPI+H G   L I    L L +VLV P + 
Sbjct: 331  TAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVCPGIT 390

Query: 407  KNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXX 586
            K+LLSVS+ T D  C F F     VIKD ++ Q+L +G+KH GLY +   P         
Sbjct: 391  KSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDVPFQTYYSTRQ 450

Query: 587  XXXXXXNKMDYMTWHARLGHPSLSSMNQL-SSVLNYFNQCNXXXXXXXXXXXXXXLPFTR 763
                     D   WH RLGHP+   +  L  +     N+ +              LPF  
Sbjct: 451  ------QSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRLPFVA 504

Query: 764  RTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQF 943
                + + L  +H D+WGPAP  + +GF++Y+I +D  S+F+W++PL+ KS+  S+F+ F
Sbjct: 505  SEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLF 564

Query: 944  ITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
              L+ NQ+  ++   Q D G E+VS+K      + GI QL SCP TP+QNG+
Sbjct: 565  QQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGI 616


>gb|PKU73682.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1211

 Score =  216 bits (549), Expect = 9e-59
 Identities = 135/362 (37%), Positives = 177/362 (48%), Gaps = 21/362 (5%)
 Frame = +2

Query: 77   SSGVYCFRCGYPYHKANNC-------FAPDSVIADTAQAFTAMHLTDQND*AWYPDTGAT 235
            SSGV C  C    H A  C       + P       +QA  A   T+ N   WY D+GA+
Sbjct: 118  SSGVICQICKKNGHSAEACWHHLNPNYIPSQPSNKNSQALLANTDTN-NSTDWYLDSGAS 176

Query: 236  NHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKK 409
             HMT     +     Y G D V +G+G ++PI+H G   L  P  KL LS +L  P +  
Sbjct: 177  THMTNSTNNLATSNVYTGTDKVTLGDGRSVPIAHSGTGLLPTPSRKLFLSQLLHTPSISH 236

Query: 410  NLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXX 589
            NLLSVS   KDN    +F   GF+ KDL + +ILL+G    GLY I              
Sbjct: 237  NLLSVSNLVKDNNISIIFDSSGFIFKDLTTNRILLRGPCRDGLYRIAKPVHQTQHTGLSV 296

Query: 590  XXXXXNKMDYMTWHARLGHPSLSSMNQLSS------------VLNYFNQCNXXXXXXXXX 733
                 ++     WH RLGHPSLS +  +S               N  NQC          
Sbjct: 297  ARTSSSQ-----WHNRLGHPSLSILQHISKNNPDLHISSTSISCNPCNQCKGHK------ 345

Query: 734  XXXXXLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRK 913
                 L F    N     L  LHSDVWGP+P P+ +GFR+Y+I VD+ S+F W FP+  K
Sbjct: 346  -----LQFPISENLKQAPLELLHSDVWGPSPVPSHQGFRYYVIFVDDYSRFIWLFPIMFK 400

Query: 914  SEVPSIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPEQN 1093
            S+V +IFI F+T +  Q +R++K ++TD G EYV+   + F    GI+   SCP TPEQN
Sbjct: 401  SDVTNIFINFVTFIERQTSRKIKAIRTDGGGEYVNQHFQKFTRDNGILHQTSCPYTPEQN 460

Query: 1094 GL 1099
            GL
Sbjct: 461  GL 462


>gb|PKU66732.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1298

 Score =  215 bits (548), Expect = 1e-58
 Identities = 118/332 (35%), Positives = 177/332 (53%), Gaps = 3/332 (0%)
 Frame = +2

Query: 113  YHKANNCFAPDSVIADTAQAFTAMHLTDQND*AWYPDTGATNHMTADPTQVEGKTFYHGQ 292
            +H+ N  + P     +  +A  A   T +N   WY D+GA++HMT +   +     Y G 
Sbjct: 286  WHRLNVNYVPQQHTENQPKALAATSDT-KNHNEWYLDSGASSHMTNNTENLISSASYQGS 344

Query: 293  DSVLVGNGSTLPISHFGH--LTIPHTKLHLSNVLVVPDLKKNLLSVSQYTKDNKCCFLFY 466
            DS+ +G+GS + I++ G   L  P  KL L+N+L +P +  NLLS+S   KDN     F 
Sbjct: 345  DSITIGDGSHIQIANTGSGILPTPSRKLKLANLLHIPKISYNLLSISNLVKDNDISITFN 404

Query: 467  LWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXXXXXXXXXXXXXXXNKMDYMTWHARLGH 646
              GF +KD+ + +I+L+G    GLYPI  +                 +     WH RLGH
Sbjct: 405  PNGFTMKDMTTDRIILRGPCKDGLYPIAESSSSSTALQA-------TRSSSDVWHNRLGH 457

Query: 647  PSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXXXLPFTRRTNYTDQFLHTLHSDVWGPA 823
            P+  +M  ++      N  C+              +PFT+  N     L  LHSDVWGP+
Sbjct: 458  PNQRTMRYIAIANPQLNISCSISKCVSCSSCKGHKIPFTKSCNRMKTPLALLHSDVWGPS 517

Query: 824  PSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSG 1003
            P  + +GFR+Y+  +D+ S+++W FP+R KS+VP IFI F   + NQ + ++K ++TD G
Sbjct: 518  PVMSNQGFRYYVTFIDDFSRYTWIFPIRNKSDVPHIFINFKIFIENQTDYKIKMLRTDGG 577

Query: 1004 EEYVSHKLRDFFVTQGIIQLFSCPGTPEQNGL 1099
             EY ++ L  FF + GI   FSCP TPEQNG+
Sbjct: 578  TEYRNNTLNHFFESNGIQHQFSCPYTPEQNGV 609


>gb|PKU68986.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 1136

 Score =  215 bits (547), Expect = 1e-58
 Identities = 132/364 (36%), Positives = 188/364 (51%), Gaps = 15/364 (4%)
 Frame = +2

Query: 53   PNASPVGDSSGVYCFRCGYPYHKANNC-------FAPDSVIADTAQAFTAMHLTDQND*A 211
            PN      ++ V C  C    H A +C       + P   + + A A  A   +D ++ A
Sbjct: 43   PNIPRTNSNAAVSCQICSKKGHTAQSCWHRLDLNYTPQ--VKNPATALMAS--SDSSEAA 98

Query: 212  WYPDTGATNHMTADPTQVEGKTFYHGQDSVLVGNGSTLPISHFGH--LTIPHTKLHLSNV 385
            W+ D+GA+ H+T     +     Y+G D+V +G+G+++ I+H G   L  P  KL LS +
Sbjct: 99   WFLDSGASTHLTNSLDNLSLSKPYNGPDNVTIGDGTSVGIAHAGAGILPTPSRKLKLSQI 158

Query: 386  LVVPDLKKNLLSVSQYTKDNKCCFLFYLWGFVIKDLKSGQILLKGSKHGGLYPIGVAPXX 565
            L  P LK NLLS+SQ TKDN     F   GFV+KDL + + LL+G    GLY + +A   
Sbjct: 159  LHTPTLKYNLLSISQLTKDNFISITFDPRGFVLKDLATQETLLQGPVKDGLYAVPLASKI 218

Query: 566  XXXXXXXXXXXXXNKMDYMTWHARLGHP------SLSSMNQLSSVLNYFNQCNXXXXXXX 727
                          K     WH RLGHP      SLSS NQL  +    N C        
Sbjct: 219  RQHTALTT-----QKATDTVWHQRLGHPHNRVFNSLSSCNQLLKMNKTHNTCESCTAAKC 273

Query: 728  XXXXXXXLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLR 907
                   L F    N     L  +HSDVWGPAP+ + +GFRFY+I VD+ ++++W +PL+
Sbjct: 274  HK-----LVFQHSVNRQLHPLDLIHSDVWGPAPTTSNQGFRFYVIFVDDHTRYTWIYPLK 328

Query: 908  RKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGEEYVSHKLRDFFVTQGIIQLFSCPGTPE 1087
             KS+V S+F+ F T + N   RR+K ++TD G E+V+   +++ +  GI    SCP TPE
Sbjct: 329  FKSDVFSVFVNFKTQIENFTERRIKTLRTDGGTEFVNSSFQNYLLKHGISHQLSCPYTPE 388

Query: 1088 QNGL 1099
            QNGL
Sbjct: 389  QNGL 392