BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00032878
         (1131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]          96   7e-31
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo...    98   4e-30
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    93   7e-30
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    93   2e-29
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      93   2e-29
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...    90   2e-29
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      94   3e-29
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   100   6e-28
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]   100   6e-28
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]      89   2e-27
gb|ASR75372.1| retrotransposon protein [Oryza nivara]                  82   2e-27
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...    82   2e-27
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...    81   4e-27
gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposo...    94   1e-26
dbj|GAU47849.1| hypothetical protein TSUD_404260 [Trifolium subt...    85   1e-26
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...    79   1e-26
gb|KFK32108.1| hypothetical protein AALP_AA6G199700 [Arabis alpina]    84   2e-26
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      95   6e-26
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    96   9e-26
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...    93   3e-25

>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score = 95.9 bits (237), Expect(3) = 7e-31
 Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP + K I CK +F +       D   YKARLV KGY+Q  GI++N++FS VVKH+SI
Sbjct: 633  VKLPKEKKPIRCKWIFKRKKGISPSDEAMYKARLVAKGYSQIPGIDFNDVFSPVVKHSSI 692

Query: 791  *MLLVIVSQFDLELELMV*N*HCC--RVKEDLH-EATERLCSAR*KNKVCLFKKSLYGLK 961
              LL IV+  D ELE M          ++ED++ E +E       +N VC  KKSLYGLK
Sbjct: 693  RTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQSEGFVVPGKENLVCRLKKSLYGLK 752

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 753  QSSRQWYKR 761



 Score = 54.7 bits (130), Expect(3) = 7e-31
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
 Frame = +3

Query: 177 KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
           KG++L  P+TK V   +N +F E+ +L DK  T V       +S   + V+         
Sbjct: 474 KGYKLWCPKTKKVVISRNVVFHESVMLHDKPSTNV-----PVESQEKASVQVEHLISSGH 528

Query: 357 WPDGSN----EDFSTTGGDEQETTQMQSGPLTLR-RSNKIPVPPTRYGW*DHVLFALVTE 521
            P+  N    +D       +  T Q        + +  +   PP RY    +++   ++ 
Sbjct: 529 APEKENVAINQDVPVIEDSDSSTVQQSPKRFIAKDKPKRNTKPPQRYIEEANIVAYALSV 588

Query: 522 AWYL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
           A  +       +Y + I  DD N+WIT M  E++SL++N T EL+
Sbjct: 589 AEDIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELV 633



 Score = 33.9 bits (76), Expect(3) = 7e-31
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 46  VDYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           V+YS LR+FGC+ Y+ VD             CIF+ +  G+K  K+
Sbjct: 436 VNYSDLRVFGCTAYAHVD---NGKLEPRAIKCIFLGYPSGMKGYKL 478


>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 530

 Score = 97.8 bits (242), Expect(3) = 4e-30
 Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 12/131 (9%)
 Frame = +2

Query: 632 VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
           V LP   K +GCK V  +       +  ++KARLV KG++QKEGI+Y+E+FS VVKH +I
Sbjct: 228 VPLPRGVKPVGCKWVLKRKEGIPGVEPSRFKARLVAKGFSQKEGIDYHEVFSPVVKHKTI 287

Query: 791 *MLLVIVSQFDLELELMV*N*HCCRVKEDLHEAT-----ERLCSAR*KNKVCLFKKSLYG 955
            +LL +VS  D++LE +  N     +  +L E       +       KN VCL KKSLYG
Sbjct: 288 RVLLAMVSALDMKLEQL--NVKIAFLHGNLEEQVYMSQPDGFLEVGKKNHVCLLKKSLYG 345

Query: 956 LKQSLRQWYKR 988
           LKQS RQWYKR
Sbjct: 346 LKQSPRQWYKR 356



 Score = 50.8 bits (120), Expect(3) = 4e-30
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
 Frame = +3

Query: 177 KGFRL---RNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQV-KKVEFT 344
           KG+RL    N  TK +   ++  F+E+ +   K + E      A + S N  V +KVEF 
Sbjct: 71  KGYRLWCTENNRTKKIVISRDVTFNESAMFGQKEEVE----NLAGNKSTNKGVHQKVEFE 126

Query: 345 EDPKWPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTRYGW*DHVL------F 506
            +    D + E+ +    ++    Q +   +  RR+ +    PTRY    +V+      +
Sbjct: 127 VE----DSNKENLNPV--EQSSNVQEEPQSIATRRTRREIRKPTRYADVTNVVDTNSVAY 180

Query: 507 ALVT----EAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
           AL+     ++    SYK+ I+  + +KW+  M+ E+ SL +NQT EL+
Sbjct: 181 ALLVGENLDSDEPKSYKEAIQSKEASKWLIAMDEEMQSLKKNQTWELV 228



 Score = 33.1 bits (74), Expect(3) = 4e-30
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = +1

Query: 1   AIDL*ILEKI**G*LVDYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVK 171
           AIDL   +++  G   DYS LRIFGC  Y+ V+             CIF+ +  GVK
Sbjct: 18  AIDLKTPQEVWSGKPSDYSGLRIFGCPAYAHVN---DGKLEPRAMKCIFLGYPTGVK 71


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score = 93.2 bits (230), Expect(3) = 7e-30
 Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP + K I CK +F +       D  +YKARL+ KGY+Q  GI++N++FS VVKH+SI
Sbjct: 1058 VKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSI 1117

Query: 791  *MLLVIVSQFDLELELMV*N*HCC--RVKEDLH-EATERLCSAR*KNKVCLFKKSLYGLK 961
              LL IV+  D ELE M          ++ED++ E  +       +N VC  KKSLYGLK
Sbjct: 1118 RTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLK 1177

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 1178 QSPRQWYKR 1186



 Score = 54.3 bits (129), Expect(3) = 7e-30
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKK-VEFTEDP 353
            KG++L  PETK V   +N +F E+ +L DK  T V          A+ QV+  +     P
Sbjct: 899  KGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPV---ESQEKASVQVEHLISSGHAP 955

Query: 354  KWPDGSNEDFSTTGGDEQETTQMQSGPLTLR--RSNKIPVPPTRYGW*DHVLFALVTEAW 527
            +  D +         D   +   QS   ++   R  +   PP RY    +++   ++ A 
Sbjct: 956  EKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAE 1015

Query: 528  YL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
             +       +Y + I  DD N+WIT M  E++SL++N T EL+
Sbjct: 1016 EIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELV 1058



 Score = 33.5 bits (75), Expect(3) = 7e-30
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           +YS LR+FGC+ Y+ VD             CIF+ +  GVK  K+
Sbjct: 862 NYSDLRVFGCTAYAHVD---NGKLEPRAIKCIFLGYPSGVKGYKL 903


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 93.2 bits (230), Expect(3) = 2e-29
 Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP + K I CK +F +       D  +YKARLV KGY+Q  GI++N++FS ++KH+SI
Sbjct: 886  VKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSI 945

Query: 791  *MLLVIVSQFDLELELMV*N*HCC--RVKEDLH-EATERLCSAR*KNKVCLFKKSLYGLK 961
              LL IV+  D ELE M          ++ED++ E  E       +N VC  KKSLYGLK
Sbjct: 946  RTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLK 1005

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 1006 QSPRQWYKR 1014



 Score = 53.1 bits (126), Expect(3) = 2e-29
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
            KG++L  PETK V   +N +F E+ +L DK  T V       +S   + V+         
Sbjct: 727  KGYKLWCPETKKVVISRNVVFHESVILHDKPSTNV-----PVESQEKASVQVEHLISSGH 781

Query: 357  WPD----GSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPV-PPTRYGW*DHVLFALVTE 521
             P+      N+D       +    Q  S     +   K  + PP RY    +++   ++ 
Sbjct: 782  APEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSV 841

Query: 522  AWYL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
            A  +       +Y + I  DD N+WIT M  E++SL +N T E +
Sbjct: 842  AEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFV 886



 Score = 33.5 bits (75), Expect(3) = 2e-29
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           +YS LR+FGC+ Y+ VD             CIF+ +  GVK  K+
Sbjct: 690 NYSDLRVFGCTAYAHVD---NGKLEPRAIKCIFLGYPSGVKGYKL 731


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 93.2 bits (230), Expect(3) = 2e-29
 Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP + K I CK +F +       D  +YKARLV KGY+Q  GI++N++FS ++KH+SI
Sbjct: 886  VKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSI 945

Query: 791  *MLLVIVSQFDLELELMV*N*HCC--RVKEDLH-EATERLCSAR*KNKVCLFKKSLYGLK 961
              LL IV+  D ELE M          ++ED++ E  E       +N VC  KKSLYGLK
Sbjct: 946  RTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLK 1005

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 1006 QSPRQWYKR 1014



 Score = 53.1 bits (126), Expect(3) = 2e-29
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
            KG++L  PETK V   +N +F E+ +L DK  T V       +S   + V+         
Sbjct: 727  KGYKLWCPETKKVVISRNVVFHESVILHDKPSTNV-----PVESQEKASVQVEHLISSGH 781

Query: 357  WPD----GSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPV-PPTRYGW*DHVLFALVTE 521
             P+      N+D       +    Q  S     +   K  + PP RY    +++   ++ 
Sbjct: 782  APEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSV 841

Query: 522  AWYL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
            A  +       +Y + I  DD N+WIT M  E++SL +N T E +
Sbjct: 842  AEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFV 886



 Score = 33.5 bits (75), Expect(3) = 2e-29
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           +YS LR+FGC+ Y+ VD             CIF+ +  GVK  K+
Sbjct: 690 NYSDLRVFGCTAYAHVD---NGKLEPRAIKCIFLGYPSGVKGYKL 731


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 89.7 bits (221), Expect(2) = 2e-29
 Identities = 62/133 (46%), Positives = 79/133 (59%), Gaps = 17/133 (12%)
 Frame = +2

Query: 641  PND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI*ML 799
            P+  K I CK VF K       +  +YKAR+V +G+ Q+EG++YNEIFS VV+HTSI +L
Sbjct: 829  PSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVL 888

Query: 800  LVIVSQFDLELELMV*N*HCCRVKED-LH-EATERLCSAR*--------KNKVCLFKKSL 949
            L IV+  +LELE +        VK   LH E  E +   +         +N VC  KKSL
Sbjct: 889  LAIVAHQNLELEQL-------DVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSL 941

Query: 950  YGLKQSLRQWYKR 988
            YGLKQS RQWYKR
Sbjct: 942  YGLKQSPRQWYKR 954



 Score = 69.7 bits (169), Expect(2) = 2e-29
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
            KGFR+ +P  K V   +N +FDE+ LL+   K    +  G+ D     QV  ++   D K
Sbjct: 670  KGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQV--IQNESDLK 727

Query: 357  WPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPV-PPTRYGW*DHVLFALVT----E 521
             P+  +++  T     +         +   R  ++ V PPTRYG+ D V +AL      +
Sbjct: 728  EPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVD 787

Query: 522  AWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELIFQMIKRRLV 665
                 +YK+ I   D+ KW   M  E++SL +NQT +L+ Q   R+++
Sbjct: 788  TSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKII 835


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 94.0 bits (232), Expect(3) = 3e-29
 Identities = 61/127 (48%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
 Frame = +2

Query: 638  LPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI*M 796
            LP + K I CK +F +       D  +YKARLV KGY+Q  GI++N++FS VVKH+SI  
Sbjct: 762  LPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRT 821

Query: 797  LLVIVSQFDLELELMV*N*HCC--RVKEDLH-EATERLCSAR*KNKVCLFKKSLYGLKQS 967
            LL IV+  D ELE M          ++ED++ E  E       +N VC  KKSLYGLKQS
Sbjct: 822  LLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQS 881

Query: 968  LRQWYKR 988
             RQWYKR
Sbjct: 882  PRQWYKR 888



 Score = 51.6 bits (122), Expect(3) = 3e-29
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFT---- 344
            KG++L  PETK V   +N +F E+ +L DK  T V      P  S      +VE      
Sbjct: 601  KGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNV------PVESQEKVSVQVEHLISSG 654

Query: 345  EDPKWPD-GSNEDFSTTGGDEQETTQMQSGP---LTLRRSNKIPVPPTRYGW*DHVLFAL 512
              P+  D   N+D      ++ +++ +Q  P   +   R  +   PP RY    +++   
Sbjct: 655  HAPEKEDVAINQDAPVI--EDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYA 712

Query: 513  VTEAWYL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCEL 635
            ++ A  +       +Y   I  DD N+WIT M  E++SL++N + EL
Sbjct: 713  LSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWEL 759



 Score = 33.5 bits (75), Expect(3) = 3e-29
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           +YS LR+FGC+ Y+ VD             CIF+ +  GVK  K+
Sbjct: 564 NYSDLRVFGCTAYAHVD---NGKLEPRVIKCIFLGYLSGVKGYKL 605


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 1032

 Score =  100 bits (250), Expect(3) = 6e-28
 Identities = 64/130 (49%), Positives = 78/130 (60%), Gaps = 12/130 (9%)
 Frame = +2

Query: 635 DLPND*KTIGCK*VFCKDCE-------QYKARLVVKGYTQKEGINYNEIFSHVVKHTSI* 793
           +LP   K IGCK V+ K          +YKARLV KGY QKEGI+YNE+FS VVKH+SI 
Sbjct: 615 NLPKGKKAIGCKWVYAKKDGFSDKSEVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIR 674

Query: 794 MLLVIVSQFDLELELMV*N*HCCRVKEDLHE-----ATERLCSAR*KNKVCLFKKSLYGL 958
           +LL +V+Q D+EL  M  +     +  DL E       E    A  +N  C  +KSLYGL
Sbjct: 675 VLLALVAQLDMELVQM--DVKTAFLHGDLEEEIYMTQPEGFKVAGKENMFCKLEKSLYGL 732

Query: 959 KQSLRQWYKR 988
           KQS RQWYKR
Sbjct: 733 KQSPRQWYKR 742



 Score = 49.7 bits (117), Expect(3) = 6e-28
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 9/162 (5%)
 Frame = +3

Query: 177 KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
           KG+RL   ETK     ++  FDE+ +L  K  TE            N   K+VEF     
Sbjct: 466 KGYRLWCLETKKTIISRDVTFDESTML-GKVTTE---------QKKNGTPKQVEFERKIV 515

Query: 357 WPDGSNEDFSTTGGDEQ---ETTQMQSGP-----LTLRRSNKIPVPPTRYGW*DHVLFAL 512
           +P  +N++  T   DE+   E   +Q  P     + LR+  +  + P RY   D V +A 
Sbjct: 516 FP--ANDEEKTPMVDEESDEEEVHIQEPPQQLESIALRKPKRTTIMPARYV--DMVSYAS 571

Query: 513 -VTEAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCEL 635
            V       +Y + ++  + +KW + M  E++SL RNQT +L
Sbjct: 572 PVASDDIPTTYIEAVKGSEEDKWRSAMSEEMESLRRNQTWKL 613



 Score = 23.9 bits (50), Expect(3) = 6e-28
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 49  DYSTLRIFGCSVY 87
           DY +L +FGC+ Y
Sbjct: 429 DYDSLHVFGCTAY 441


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score =  100 bits (250), Expect(3) = 6e-28
 Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632 VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
           VD P   K +GCK VF K       + E++KA LV K YTQ+EG+++NEIFS +VKHTSI
Sbjct: 493 VDKPKGCKVVGCKWVFKKKLGIPHVEPERFKATLVAKAYTQREGMDFNEIFSPMVKHTSI 552

Query: 791 *MLLVIVSQFDLELELMV*N---*HCCRVKEDLHEATERLCSAR*KNKVCLFKKSLYGLK 961
            +LL +VS ++LEL  M  N    H    +E   +  +       +N+VCL K+SLYGLK
Sbjct: 553 RVLLALVSLWNLELXQMDVNRAFLHGELEEEIFMQQPKGFIVKGKENQVCLLKRSLYGLK 612

Query: 962 QSLRQWYKR 988
           QS RQWYKR
Sbjct: 613 QSPRQWYKR 621



 Score = 44.7 bits (104), Expect(3) = 6e-28
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 4/162 (2%)
 Frame = +3

Query: 165 SQNSKGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFT 344
           S   KG +L  P TK  F  ++  F E + L++  +  +        +  N +VK  +F 
Sbjct: 357 SDGVKGCKLWCPTTKKCFISRDVDFRECEFLKNDREVFI--------NKENGEVKD-KFE 407

Query: 345 EDPKWPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTRYGW*DHVLFALVTEA 524
             P+  D   E++  T    + + +                PP R+G+ D V ++L    
Sbjct: 408 TKPQQYDIPLENYQLTRDGARRSIR----------------PPQRFGYNDMVAYSLSIGE 451

Query: 525 WYLC----SYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
              C    +Y + I   D+ KW+T M+ E +SL +N T +L+
Sbjct: 452 ELSCAEPKNYLEAISCKDSPKWMTAMQEEFESLLKNGTWQLV 493



 Score = 28.9 bits (63), Expect(3) = 6e-28
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           DYS LR FGC  Y+                CIF+ ++ GVK  K+
Sbjct: 324 DYSKLRTFGCIAYA---HQNEGKLEPRARKCIFVGYSDGVKGCKL 365


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score = 89.0 bits (219), Expect(3) = 2e-27
 Identities = 60/129 (46%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP + K I CK +F +       D  +YKARLV KGY+Q  GI++N++FS V+KH+SI
Sbjct: 730  VKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSI 789

Query: 791  *MLLVIVSQFDLELELMV*N*HCC--RVKEDLH-EATERLCSAR*KNKVCLFKKSLYGLK 961
              LL IV+  D ELE M          ++ED++ E  E       +N V   KKSLYGLK
Sbjct: 790  RTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLK 849

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 850  QSPRQWYKR 858



 Score = 50.1 bits (118), Expect(3) = 2e-27
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKK-VEFTEDP 353
            K ++L  P+TK V   +N +F E+ +L DK  T V          A+ QV+  +     P
Sbjct: 571  KDYKLWCPKTKKVVISRNVVFHESVMLHDKPSTNVPV---ESQEKASVQVEHLISSGHAP 627

Query: 354  KWPDGS-NEDFSTTGGDEQETTQMQSGP---LTLRRSNKIPVPPTRYGW*DHVLFALVTE 521
            +  D + N+D S    ++ +++ +Q  P   +   +  +   PP RY    +++   ++ 
Sbjct: 628  EKEDVAINQDASVI--EDSDSSAVQQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSV 685

Query: 522  AWYL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
            A  +       +Y + I  D  N+WIT M  E++SL++N T EL+
Sbjct: 686  AEEIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELV 730



 Score = 33.9 bits (76), Expect(3) = 2e-27
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           +YS LR+FGC+ Y+ VD             CIF+ +  GVK  K+
Sbjct: 534 NYSDLRVFGCTAYAHVD---NGKLEPRAIKCIFLGYPSGVKDYKL 575


>gb|ASR75372.1| retrotransposon protein [Oryza nivara]
          Length = 1170

 Score = 82.0 bits (201), Expect(3) = 2e-27
 Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 11/130 (8%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK--------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTS 787
            V LP   K + CK +F +        +  ++KARLV KG++Q  G++YN++FS VVKH+S
Sbjct: 760  VHLPKQKKPVRCKWIFKEKGGFISPSEPPRFKARLVAKGFSQIAGVDYNDVFSPVVKHSS 819

Query: 788  I*MLLVIVSQFDLELE---LMV*N*HCCRVKEDLHEATERLCSAR*KNKVCLFKKSLYGL 958
            I     IV+  DLELE   +     H    +E   +  E       ++ VC  K+SLYGL
Sbjct: 820  IRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGL 879

Query: 959  KQSLRQWYKR 988
            KQS RQWYKR
Sbjct: 880  KQSPRQWYKR 889



 Score = 56.6 bits (135), Expect(3) = 2e-27
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
            KG++L NPET   F  ++ +F+E+ +  D   T+V    G  D        +VE  +D +
Sbjct: 604  KGYKLWNPETNKTFMSRSVVFNESVMFNDSLPTDVIP--GGSDEEQQYVSVQVEHVDDQE 661

Query: 357  WPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTRY-GW*DHVLFAL-----VT 518
                 N D + T        Q Q  P+  RR+ +    P R     D V +A      V 
Sbjct: 662  TEIVGN-DVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVE 720

Query: 519  EAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
                  +Y + +   D  KWI+ M+ E+ SL++N T EL+
Sbjct: 721  NTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELV 760



 Score = 34.3 bits (77), Expect(3) = 2e-27
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           DYS LR+FGC+ Y+ VD             C+F+ +  GVK  K+
Sbjct: 567 DYSQLRVFGCTAYAHVD---NGKLEPRAIKCLFLGYGSGVKGYKL 608


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score = 82.4 bits (202), Expect(3) = 2e-27
 Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP   K + CK +F +       +  ++KARLV KG++Q  G++YN++FS VVKH+SI
Sbjct: 841  VHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSI 900

Query: 791  *MLLVIVSQFDLELE---LMV*N*HCCRVKEDLHEATERLCSAR*KNKVCLFKKSLYGLK 961
                 IV+  DLELE   +     H    +E   +  E       ++ VC  K+SLYGLK
Sbjct: 901  RTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLK 960

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 961  QSPRQWYKR 969



 Score = 56.6 bits (135), Expect(3) = 2e-27
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
            KG++L NPET   F  ++ +F+E+ +  D   T+V    G  D        +VE  +D +
Sbjct: 685  KGYKLWNPETNKTFMSRSVVFNESVMFNDSLPTDVIP--GGSDEEQQYVSVQVEHVDDQE 742

Query: 357  WPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTRY-GW*DHVLFAL-----VT 518
                 N D + T        Q Q  P+  RR+ +    P R     D V +A      V 
Sbjct: 743  TEIVGN-DVNDTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVE 801

Query: 519  EAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
                  +Y + +   D  KWI+ M+ E+ SL++N T EL+
Sbjct: 802  NTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELV 841



 Score = 33.5 bits (75), Expect(3) = 2e-27
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           DYS LR+FGC+ Y+ VD             C+F+ +  GVK  K+
Sbjct: 648 DYSQLRVFGCTAYAHVD---NEKLEPRAIKCLFLGYGLGVKGYKL 689


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score = 81.3 bits (199), Expect(3) = 4e-27
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP   K + CK +F +       +  ++K RLV KG++Q  G++YN++FS VVKH+SI
Sbjct: 841  VHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSI 900

Query: 791  *MLLVIVSQFDLELE---LMV*N*HCCRVKEDLHEATERLCSAR*KNKVCLFKKSLYGLK 961
                 IV+  DLELE   +     H    +E   +  E       ++ VC  K+SLYGLK
Sbjct: 901  RTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLK 960

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 961  QSPRQWYKR 969



 Score = 56.2 bits (134), Expect(3) = 4e-27
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
            KG++L NPET   F  +N +F+E  +  D   T+V    G  D        +VE  +D +
Sbjct: 685  KGYKLWNPETNKTFMSRNVIFNEFVMFNDSLPTDVIP--GGSDEEQQYVSVQVEHVDDQE 742

Query: 357  WPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTR-YGW*DHVLFAL-----VT 518
                 N D + T        Q Q  P+  RR+ +    P R     D V +A      V 
Sbjct: 743  TEIVGN-DVNDTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVE 801

Query: 519  EAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
                  +Y + +   D  KWI+ ++ E+ SL++N T EL+
Sbjct: 802  NTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELV 841



 Score = 34.3 bits (77), Expect(3) = 4e-27
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           DYS LR+FGC+ Y+ VD             C+F+ +  GVK  K+
Sbjct: 648 DYSQLRVFGCTAYAHVD---NGKLEPRAIKCLFLGYGSGVKGYKL 689


>gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 993

 Score = 94.4 bits (233), Expect(2) = 1e-26
 Identities = 62/129 (48%), Positives = 79/129 (61%), Gaps = 17/129 (13%)
 Frame = +2

Query: 653  KTIGCK*VFC-------KDCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI*MLLVIV 811
            K + CK ++         +  +YKARLV +GYTQKEGI+Y+EIFS VVKHTSI +L+ +V
Sbjct: 787  KVVSCKWIYKIKEGNTKNEPNRYKARLVARGYTQKEGIDYSEIFSPVVKHTSIRILMGLV 846

Query: 812  SQFDLELELMV*N*HCCRVKED-LH-EATERLCSAR--------*KNKVCLFKKSLYGLK 961
            + FD ELE +        VK   LH E  E +  A+         +N VCL KKS+YGLK
Sbjct: 847  AFFDWELEQL-------DVKTAFLHGELDENIMMAQPEGFVLKGKENLVCLLKKSIYGLK 899

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 900  QSPRQWYKR 908



 Score = 55.8 bits (133), Expect(2) = 1e-26
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 8/172 (4%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTY--KNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTED 350
            KG+RL +  + GV T   ++ +F+EN+L   +S+ +        +S +N    + E    
Sbjct: 619  KGYRLWDLSSPGVKTIISRDVIFNENRLYISESENKDTTISSIENSDSNKDYYEFEVEPP 678

Query: 351  PKWPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIP--VPPTRYGW*DHVLFALVTEA 524
                   N   ST   +E E     +    L R  +     PP++YG+ + + +AL++  
Sbjct: 679  SNTLSFENPQQSTEPENEPEPVSENNHDYLLSRDRERRNIKPPSKYGYAELIEYALLSAL 738

Query: 525  WYL----CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELIFQMIKRRLVA 668
             Y      SYK+ +   D+  W+  M+ E DSL +N T  L+ +   +++V+
Sbjct: 739  EYEDSEPISYKEAVSCKDSENWVKAMQDEYDSLIKNNTWILVNKKENQKVVS 790


>dbj|GAU47849.1| hypothetical protein TSUD_404260 [Trifolium subterraneum]
          Length = 887

 Score = 85.1 bits (209), Expect(2) = 1e-26
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632 VDLPND*KTIGCK*VFC-------KDCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
           V LP   + IGCK V+        K+ E++KARLV KGY+Q++ I+Y+EIF  VV+HTSI
Sbjct: 506 VQLPKGKRVIGCKWVYKRKPAVTEKEGEKFKARLVAKGYSQQKRIDYDEIFFPVVRHTSI 565

Query: 791 *MLLVIVSQFDLELELM---V*N*HCCRVKEDLHEATERLCSAR*KNKVCLFKKSLYGLK 961
             +L +V+  D+ LE M       H    ++   E  E          VC  K+SLYGLK
Sbjct: 566 RAVLALVASRDMHLEQMDVKTTFLHDNLDEQIYMEQAEGFSDTGKGRLVCKLKRSLYGLK 625

Query: 962 QSLRQWYKR 988
           +S RQWYKR
Sbjct: 626 RSPRQWYKR 634



 Score = 65.1 bits (157), Expect(2) = 1e-26
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
 Frame = +3

Query: 177 KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSA---------NSQVK 329
           KGF+L +P +K +   ++ +FDE  +L+    TE  + GG+P   A          + + 
Sbjct: 348 KGFKLWDPVSKKMVLSRDVVFDEQFMLKQPEVTE--SAGGSPHKEAIQVEIEPTPTNNIP 405

Query: 330 KVEFTEDPKWPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTRYGW*DHVLFA 509
           +V   + P     +N D    GG   E        L   R  +   PP RYG+ D   +A
Sbjct: 406 QVH--QQPPETIITNNDTEVLGGATGELAGEHDYQLVRDRERRSVKPPERYGYEDLAAYA 463

Query: 510 LVTEAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
           L+T +    ++++ +   +  +W+  M  E++SL +NQT EL+
Sbjct: 464 LLTSSGDPSTFREAMASQEKERWMGAMMEEMESLQKNQTWELV 506



 Score = 72.4 bits (176), Expect = 6e-10
 Identities = 55/136 (40%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
 Frame = +2

Query: 632 VDLPND*KTIGCK*VFCKD------CEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI* 793
           VD P   K +GC+ V+          E++KARLV KGYTQ  G++Y EIF+ V K  +I 
Sbjct: 17  VDCPPGKKIVGCRWVYTVKYKVDGTIERFKARLVAKGYTQTYGVDYTEIFAPVAKVNTIR 76

Query: 794 MLLVIVSQFDLELELMV*N*HCCRVKED-LH-EATERL-------CSA--R*KNKVCLFK 940
           +LL + + FD  L+          VK   LH E TE +       C+     + KVC  K
Sbjct: 77  VLLSLAANFDWLLQQF-------DVKNAFLHGELTEEVYMELPLGCNIPEACEKKVCRLK 129

Query: 941 KSLYGLKQSLRQWYKR 988
           KSLYGLKQS R W+ R
Sbjct: 130 KSLYGLKQSPRAWFGR 145


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 595

 Score = 78.6 bits (192), Expect(3) = 1e-26
 Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 10/124 (8%)
 Frame = +2

Query: 632 VDLPND*KTIGCK*VFCKDCE-------QYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
           V+LP     +GCK ++ K          +YKARLV KG++QKEG+++NEIFS VV+HTSI
Sbjct: 472 VELPKGRHVVGCKWIYKKKSIFSEKEEIRYKARLVAKGFSQKEGVDFNEIFSPVVRHTSI 531

Query: 791 *MLLVIVSQFDLELELMV*N*HCC--RVKED-LHEATERLCSAR*KNKVCLFKKSLYGLK 961
            +LL IV+  D+ELE +         R++E+ L +  E       +  VC  ++SLYGLK
Sbjct: 532 RVLLAIVANQDMELEQLDVKTAFLHGRLEENILMKQPEGFEVQGKEGYVCQLQRSLYGLK 591

Query: 962 QSLR 973
           QS R
Sbjct: 592 QSPR 595



 Score = 63.2 bits (152), Expect(3) = 1e-26
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
 Frame = +3

Query: 177 KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEF----T 344
           KG+R+ +P  K V   ++ +FDE+ L   K +  +     A  +S   QV KVE     T
Sbjct: 305 KGYRIWSPSEKKVILSRDVIFDESHLFHPKLEVPI----TATHNSHPPQVGKVESISEKT 360

Query: 345 EDP----KWPDGSNEDFSTTGGDEQETTQ------MQSGPLTLRRSNKIPVPPTRYGW*D 494
           ED     K+ + S E+  +      E+ Q      +Q  P   ++  ++  PP RYG+ D
Sbjct: 361 EDKDLLDKFSEASQEEEQSENSSANESHQNAEPDSIQLNPGISQKPKRVIKPPERYGFED 420

Query: 495 HVLFALVT----EAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
              +AL      ++    +YK+ I   +  KWI  M  E++SL +NQT +L+
Sbjct: 421 MATYALHAAEEIDSDEPTTYKEAISHPEAEKWILAMREEMESLYKNQTWKLV 472



 Score = 28.5 bits (62), Expect(3) = 1e-26
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 49  DYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVKTQKV 183
           +YS LR+FGC+ Y  V+             C+F+ +  GVK  ++
Sbjct: 268 NYSNLRVFGCNAYYHVN---EGKLLPRSRKCLFMGYGDGVKGYRI 309


>gb|KFK32108.1| hypothetical protein AALP_AA6G199700 [Arabis alpina]
          Length = 1415

 Score = 83.6 bits (205), Expect(3) = 2e-26
 Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 5/103 (4%)
 Frame = +2

Query: 695 QYKARLVVKGYTQKEGINYNEIFSHVVKHTSI*MLLVIVSQFDLELELMV*N*HCCRVKE 874
           +YKARLVVKG++QK+GINY+EIFS VVK +SI ++L + +  DLE+E M  N     +  
Sbjct: 628 RYKARLVVKGFSQKKGINYDEIFSPVVKMSSIRVVLGLAASLDLEVEQM--NVKTAFLHG 685

Query: 875 DLHE-----ATERLCSAR*KNKVCLFKKSLYGLKQSLRQWYKR 988
           DL E       E       K+ VC  KKSLYGLKQ+ RQWY +
Sbjct: 686 DLEEEIYMVQPEGFEKKGKKDLVCRLKKSLYGLKQAPRQWYMK 728



 Score = 62.4 bits (150), Expect(3) = 2e-26
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 13/190 (6%)
 Frame = +3

Query: 180 GFRLRNPETKGVFTYKNTLFDENKLLQDKSKT-------------EV*A*GGAPDSSANS 320
           G+R  +P TK +   ++ +F E++ ++D  K+             EV      P +S + 
Sbjct: 444 GYRFYDPVTKKLIRSRDVVFMEDQTIKDIDKSGKPAQRYECLIDSEV-----VPSTSVHG 498

Query: 321 QVKKVEFTEDPKWPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTRYGW*DHV 500
           QV+     + P     ++++     GD+   T     P  +RRS +  +P TRY   D  
Sbjct: 499 QVESEVHVDTPSADAPAHDESIGDHGDDHGETPTTENPPIVRRSQRGLIPSTRY---DPS 555

Query: 501 LFALVTEAWYLCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELIFQMIKRRLVANESF 680
            + L+T+     S+ + +E +  +KW+  M  E++S D N T EL+     ++++ N   
Sbjct: 556 EYMLLTDGGEPESFGEALECEHKDKWLNAMGDEMESFDENDTFELVKLPKGKKVLLN--- 612

Query: 681 VRTVSNIKHD 710
            + V  IKH+
Sbjct: 613 -KWVYKIKHE 621



 Score = 23.5 bits (49), Expect(3) = 2e-26
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 16  ILEKI**G*LVDYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEF 156
           I E++  G  V YS LR+ GC  +  +              C+FI +
Sbjct: 392 IPERVWTGKDVSYSHLRVCGCKAFVHIPKDERSKLEMKSRQCVFIGY 438


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 95.1 bits (235), Expect(2) = 6e-26
 Identities = 63/131 (48%), Positives = 79/131 (60%), Gaps = 12/131 (9%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP + K I CK +F +       D  +YKARLV KGY+Q  GI++N++FS VVKH+SI
Sbjct: 823  VKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSI 882

Query: 791  *MLLVIVSQFDLELELMV*N*HCC----RVKEDLH-EATERLCSAR*KNKVCLFKKSLYG 955
              LL IV+  D ELE M  N         ++ED++ E  E       +N VC  KKSLYG
Sbjct: 883  RTLLGIVAMHDYELEQM--NVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYG 940

Query: 956  LKQSLRQWYKR 988
            LKQS RQWYKR
Sbjct: 941  LKQSPRQWYKR 951



 Score = 52.4 bits (124), Expect(2) = 6e-26
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
 Frame = +3

Query: 177  KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKK-VEFTEDP 353
            KG++L  PETK V   +N +F E+ +L DK  T V          A+ QV+  +     P
Sbjct: 664  KGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPV---ESQEKASVQVEHLISSGHAP 720

Query: 354  KWPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSN--KIPVPPTRYGW*DHVLFALVTEAW 527
            +  D +    +    D   +   QS   ++ +    +   PP RY     ++   ++ A 
Sbjct: 721  EKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAE 780

Query: 528  YL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
             +       +Y + I  DD N+WIT M  E++SL++N T EL+
Sbjct: 781  KIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELV 823


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 95.9 bits (237), Expect(3) = 9e-26
 Identities = 59/129 (45%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632  VDLPND*KTIGCK*VF-------CKDCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
            V LP   K + CK +F         +  +YK+RLV KG++QKEGI+YNE+FS VVKH SI
Sbjct: 949  VPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSI 1008

Query: 791  *MLLVIVSQFDLE---LELMV*N*HCCRVKEDLHEATERLCSAR*KNKVCLFKKSLYGLK 961
             +LL +VS F+LE   L++     H    +E   +  E    +   + VC  KKSLYGLK
Sbjct: 1009 RVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLK 1068

Query: 962  QSLRQWYKR 988
            QS RQWYKR
Sbjct: 1069 QSPRQWYKR 1077



 Score = 42.7 bits (99), Expect(3) = 9e-26
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
 Frame = +3

Query: 177  KGFRLRNPE--TKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTED 350
            KG+RL   E  T      ++  FDE+ +   + +    A     D  AN   +KVEF  D
Sbjct: 791  KGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGAN---QKVEFEVD 847

Query: 351  PKWPDGSNEDFSTTGGDEQETTQMQSGPLTLRRSNKIPVPPTRY------GW*DHVLFAL 512
                +G ++    T  ++    Q  S  +   R  +    P RY         + V FAL
Sbjct: 848  APMENGVDD----TSEEQPVIDQNDSQSIAAHRPRREIRRPMRYVDCVSANITNPVAFAL 903

Query: 513  VTEAWY----LCSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
                        SYK+ +E  D+ KW++ M+ E+ SL +NQT EL+
Sbjct: 904  AVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELV 949



 Score = 28.5 bits (62), Expect(3) = 9e-26
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 1   AIDL*ILEKI**G*LVDYSTLRIFGCSVYSLVDXXXXXXXXXXXXXCIFIEFTKGVK 171
           AID    +++  G   +YS L+IFGC  Y+ V              CIF+ +  GVK
Sbjct: 738 AIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVS---DGKLEPRAMKCIFLGYATGVK 791


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 983

 Score = 93.2 bits (230), Expect(2) = 3e-25
 Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
 Frame = +2

Query: 632 VDLPND*KTIGCK*VFCK-------DCEQYKARLVVKGYTQKEGINYNEIFSHVVKHTSI 790
           V LP + K+I CK +F +       D  +YKARLV KGY+Q   I++N++FS +VKH+SI
Sbjct: 593 VKLPKEKKSIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPSIDFNDVFSPIVKHSSI 652

Query: 791 *MLLVIVSQFDLELELMV*N*HCC--RVKEDLH-EATERLCSAR*KNKVCLFKKSLYGLK 961
             LL IV+  D ELE M          ++ED++ E  E       +N VC  KKSLYGLK
Sbjct: 653 RTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLK 712

Query: 962 QSLRQWYKR 988
           QS RQWYKR
Sbjct: 713 QSPRQWYKR 721



 Score = 52.0 bits (123), Expect(2) = 3e-25
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
 Frame = +3

Query: 177 KGFRLRNPETKGVFTYKNTLFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPK 356
           KG++L  PETK V   +N +F E+ +L DK  T V       +S   + V+         
Sbjct: 434 KGYKLWCPETKKVVISRNVVFHESVILHDKPSTNV-----PVESQEKTSVQVEHLISSGH 488

Query: 357 WPDGS----NEDFSTT-GGDEQETTQMQSGPLTLRRSNKIPVPPTRYGW*DHVLFALVTE 521
            P+      N+D       D     Q     +   +  +   PP RY    +++   ++ 
Sbjct: 489 APEKEDVAINQDAPVIQDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSV 548

Query: 522 AWYL------CSYKKVIEVDDNNKWITIMEHEIDSLDRNQTCELI 638
           A  +        Y + I  DD N+WIT M  E++SL++N T EL+
Sbjct: 549 AEEIEGNAEPSIYSEAIVSDDCNRWITTMHDEMESLEKNHTWELV 593