BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00030721
         (393 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020251790.1| pentatricopeptide repeat-containing protein ...   229   1e-68
ref|XP_010906580.1| PREDICTED: pentatricopeptide repeat-containi...   199   3e-57
ref|XP_009392128.1| PREDICTED: pentatricopeptide repeat-containi...   196   4e-56
ref|XP_020699418.1| pentatricopeptide repeat-containing protein ...   188   3e-53
ref|XP_020108984.1| pentatricopeptide repeat-containing protein ...   186   1e-52
ref|XP_020080456.1| pentatricopeptide repeat-containing protein ...   185   3e-52
ref|XP_010234581.1| PREDICTED: pentatricopeptide repeat-containi...   169   9e-47
gb|OVA03451.1| Pentatricopeptide repeat [Macleaya cordata]            169   2e-46
gb|PKA54108.1| Pentatricopeptide repeat-containing protein [Apos...   169   3e-46
gb|PIA42397.1| hypothetical protein AQUCO_02000090v1 [Aquilegia ...   164   2e-44
ref|XP_002458168.1| pentatricopeptide repeat-containing protein ...   159   8e-43
gb|ONM40418.1| Pentatricopeptide (PPR) repeat-containing protein...   153   3e-41
ref|XP_008675350.1| pentatricopeptide repeat-containing protein ...   153   1e-40
ref|XP_006660042.1| PREDICTED: pentatricopeptide repeat-containi...   151   4e-40
gb|KMZ69418.1| hypothetical protein ZOSMA_214G00060 [Zostera mar...   150   8e-40
ref|XP_020529674.1| pentatricopeptide repeat-containing protein ...   130   6e-33
gb|ERN16632.1| hypothetical protein AMTR_s00051p00085060 [Ambore...   130   9e-33
pdb|5IWW|D Chain D, Crystal structure of RNA editing factor of d...   119   8e-30
ref|XP_023641802.1| putative pentatricopeptide repeat-containing...   112   3e-26
ref|XP_006297059.1| putative pentatricopeptide repeat-containing...   112   3e-26

>ref|XP_020251790.1| pentatricopeptide repeat-containing protein At4g21065-like
           [Asparagus officinalis]
 gb|ONK78948.1| uncharacterized protein A4U43_C01F1320 [Asparagus officinalis]
          Length = 728

 Score =  229 bits (583), Expect = 1e-68
 Identities = 105/130 (80%), Positives = 121/130 (93%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           ++EFDRAFELFQ++ A  LKPDEYSFSS+LNGCG SSYL+QGMALHGHM+KSGFS+SYPV
Sbjct: 415 TNEFDRAFELFQRISAEGLKPDEYSFSSILNGCGLSSYLQQGMALHGHMMKSGFSRSYPV 474

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQNSL+DAYGKCGCV++AR+VFDEMEWSDSISWNTIISCYGF+  P + ISLFE M++QG
Sbjct: 475 VQNSLMDAYGKCGCVEEARRVFDEMEWSDSISWNTIISCYGFNDSPYETISLFEKMIEQG 534

Query: 363 WKPNRITFIA 392
           WKPNRITFIA
Sbjct: 535 WKPNRITFIA 544



 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 35/116 (30%), Positives = 62/116 (53%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLI 200
           +  LF  +L+ +L+PDE++F  VL    + + L  G  LH H++KS    +     ++L+
Sbjct: 75  SLSLFLSLLSSNLQPDEFTFPFVLKSSTHLNSLSLGQQLHTHLVKSNLLFTNVFCDSALL 134

Query: 201 DAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWK 368
             Y K G  DDA KVFD M      +WN++IS +  +   ++ + + + M   G++
Sbjct: 135 GLYVKIGSFDDAVKVFDRMHERSVATWNSMISGFVRNGRLEKGLEMLDLMESLGFE 190



 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
 Frame = +3

Query: 15  DRAFELFQQMLAVDLKP----DEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           D AF +F++M A  +       + S + +L  CG ++  + G+ +H + I+ G  +S   
Sbjct: 316 DEAFSVFREMAAECIHEAKILSKVSLTLLLPECGVNT--KTGLEIHAYAIRRGL-ESDTS 372

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           V N+L+  Y K    +   KVF      D +SWNTII+ Y  +   D+A  LF+ +  +G
Sbjct: 373 VGNALMAMYSKREDKESVEKVFVRTIDKDVVSWNTIIASYVMTNEFDRAFELFQRISAEG 432

Query: 363 WKPNRITF 386
            KP+  +F
Sbjct: 433 LKPDEYSF 440


>ref|XP_010906580.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Elaeis guineensis]
          Length = 822

 Score =  199 bits (506), Expect = 3e-57
 Identities = 93/130 (71%), Positives = 112/130 (86%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           +H+FD AFELFQQMLA D++PDEY+FSSVLNGCG+SSYLRQGM +HGH+IKSG  QSY V
Sbjct: 494 THDFDGAFELFQQMLAEDVRPDEYTFSSVLNGCGSSSYLRQGMVVHGHLIKSGLCQSYLV 553

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQN+L+DAYGKCG ++DA KVF+E+++ D ISWNTIISC GF A P +A SLF +M +QG
Sbjct: 554 VQNALMDAYGKCGSLEDAWKVFEEIDFKDRISWNTIISCCGFGACPHEAFSLFHSMQEQG 613

Query: 363 WKPNRITFIA 392
            KPNRITFIA
Sbjct: 614 CKPNRITFIA 623



 Score = 72.0 bits (175), Expect = 5e-12
 Identities = 35/114 (30%), Positives = 64/114 (56%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLI 200
           A  LF +MLA  L+P+E++F  VL       +L  G  LH  ++K+G   +     ++L+
Sbjct: 152 ALHLFLEMLASGLRPNEFTFPFVLKSSALLGFLDLGRQLHAMLLKTGLFLANVFCASALL 211

Query: 201 DAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           D Y K   + +A ++FD +   ++++WN++IS Y  + F ++ + L   MV+ G
Sbjct: 212 DLYVKLAPLGEACRMFDRIPHRNAVTWNSMISAYAQNGFLEKGLELLHTMVESG 265



 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 33/104 (31%), Positives = 55/104 (52%)
 Frame = +3

Query: 75  SFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLIDAYGKCGCVDDARKVFDE 254
           S +SVL  CG    L+ G+ +H +  ++G  +S+  V N+L+  Y +      A +VF  
Sbjct: 419 SLTSVLPECGQ--ILKSGLEIHAYAYRNGM-ESHLSVSNALMAMYARKRDRRSAERVFQR 475

Query: 255 MEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKPNRITF 386
               D +SWNT+I+ Y  +   D A  LF+ M+ +  +P+  TF
Sbjct: 476 APEKDVVSWNTMIASYAMTHDFDGAFELFQQMLAEDVRPDEYTF 519


>ref|XP_009392128.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16610-like [Musa acuminata subsp. malaccensis]
          Length = 796

 Score =  196 bits (498), Expect = 4e-56
 Identities = 90/130 (69%), Positives = 108/130 (83%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           +H+ D AFELF+QM+A  ++PDE+SFSS LN C  SSYLRQGMALHGHM+KSGF  SY V
Sbjct: 480 THDTDGAFELFRQMIAEGVRPDEFSFSSALNACACSSYLRQGMALHGHMVKSGFYCSYQV 539

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQNSL+DAYGKCGCV++AR VF+E+   D ISWNT+ISC GFSA P +AISLF  M ++G
Sbjct: 540 VQNSLMDAYGKCGCVEEARNVFEEISLKDVISWNTVISCCGFSAHPQEAISLFSRMKEEG 599

Query: 363 WKPNRITFIA 392
           WKPNR+TFIA
Sbjct: 600 WKPNRVTFIA 609



 Score = 69.7 bits (169), Expect = 3e-11
 Identities = 33/114 (28%), Positives = 62/114 (54%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLI 200
           A +LF +ML   L P+E++F  VL  C     L  G  +H  ++K+G   +     ++L+
Sbjct: 138 ALDLFLEMLDSGLSPNEFTFPFVLKSCALLGLLDLGRQIHAALVKTGLFVANVFCASALL 197

Query: 201 DAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           D Y K     DA ++FD +   + ++WN++++ Y  + F  +++ + + MVD G
Sbjct: 198 DLYVKHAPFGDACQLFDRIHHRNEVTWNSMMTAYAQNGFLGRSLEMLDRMVDSG 251


>ref|XP_020699418.1| pentatricopeptide repeat-containing protein At4g21065-like
           [Dendrobium catenatum]
 ref|XP_020699419.1| pentatricopeptide repeat-containing protein At4g21065-like
           [Dendrobium catenatum]
 gb|PKU73788.1| Pentatricopeptide repeat-containing protein [Dendrobium catenatum]
          Length = 815

 Score =  188 bits (478), Expect = 3e-53
 Identities = 89/130 (68%), Positives = 108/130 (83%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           +H+FD+  ELFQ MLA ++KPDEYSFSSVL+GCG+S++LRQ  ALHG MIKSGFSQS+ V
Sbjct: 491 AHDFDKEIELFQCMLAQEIKPDEYSFSSVLSGCGHSTHLRQATALHGRMIKSGFSQSFMV 550

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQN+L+DAYGKCGC  D RKVF+EM++ D ISWNTIIS YGFS  P +A+ LFE M  +G
Sbjct: 551 VQNALMDAYGKCGCTVDVRKVFEEMDFCDIISWNTIISSYGFSDRPQEALLLFEEMKAEG 610

Query: 363 WKPNRITFIA 392
            KPNR+TFIA
Sbjct: 611 LKPNRVTFIA 620



 Score = 60.5 bits (145), Expect = 5e-08
 Identities = 33/118 (27%), Positives = 55/118 (46%)
 Frame = +3

Query: 15  DRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNS 194
           + A +LF  ML   L+P+E++F  VL           G  LH  M+K G          +
Sbjct: 147 EHAVDLFLDMLVAGLRPNEFTFPFVLRSSSLLGLFFLGRQLHSQMLKYGLHPQNVFCATA 206

Query: 195 LIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWK 368
           L+D Y K   + DA K+FD +   +  +WN++I     +   +  + + E M D G++
Sbjct: 207 LLDMYAKLAPLCDALKLFDRIPNRNEATWNSMILALVENELLESGLKMLEMMEDDGFQ 264



 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEY----SFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQ 188
           AF++F++M A+ L   +     S S +L  C   S  + G+ +HG+ I+     S  V  
Sbjct: 394 AFDVFRKMTALCLHDAQTLSRTSLSLILPECFPMS--KTGLEVHGYAIRKCLESSTSV-G 450

Query: 189 NSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWK 368
           N+L+  Y K G ++    +F+ +   D +SWNT+ + Y  +   D+ I LF+ M+ Q  K
Sbjct: 451 NALMAMYAKKGDMESTLNIFERLLEKDIVSWNTMAASYSAAHDFDKEIELFQCMLAQEIK 510

Query: 369 PNRITF 386
           P+  +F
Sbjct: 511 PDEYSF 516


>ref|XP_020108984.1| pentatricopeptide repeat-containing protein At2g13600-like [Ananas
           comosus]
          Length = 762

 Score =  186 bits (472), Expect = 1e-52
 Identities = 85/130 (65%), Positives = 110/130 (84%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           +++FD AF+LFQ++LA  ++PDEYS+SSVLNGCG S++LRQGMALHG ++KSG   SYPV
Sbjct: 470 TNDFDSAFDLFQELLADGIRPDEYSYSSVLNGCGISAHLRQGMALHGQIVKSGLYHSYPV 529

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQN+L+DAYGKCGC + A+KVFDE++  D+ISWNTIIS YGF+  P +AISLF  M + G
Sbjct: 530 VQNALMDAYGKCGCTEYAQKVFDEVDAKDTISWNTIISSYGFNTRPHEAISLFHEMQELG 589

Query: 363 WKPNRITFIA 392
           +KPNR+TFIA
Sbjct: 590 FKPNRVTFIA 599



 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 36/114 (31%), Positives = 61/114 (53%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLI 200
           A +LF  ML   L+P+E++F   L        L  G  +H  ++KSG   S     ++L+
Sbjct: 128 ALDLFLLMLRSHLRPNEFTFPFALKSAAALDLLPLGHQIHSSLLKSGLFPSNVFCASALL 187

Query: 201 DAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           D Y K   + DAR VFD +    +++WN++I  Y  + F ++A+ L ++M + G
Sbjct: 188 DLYVKLATLGDARLVFDRIPHRTAVTWNSMICAYAQNGFLEEALRLMDSMAESG 241



 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
 Frame = +3

Query: 3   SHEFDRAFELFQQML------AVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGF 164
           S +   AF++F++M       A  L P   S + +L  C + S  + G+ +H +  + G 
Sbjct: 367 SGQTHEAFDVFREMAFQCCREAQSLSP--VSLTMILPACDSLS--KSGLEIHAYAYRRGM 422

Query: 165 SQSYPVVQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFE 344
            QS+  V N+L+  Y K G  + A KVF E    D +SWNT+IS    +   D A  LF+
Sbjct: 423 -QSHTSVSNALMAMYAKRGDRERADKVFQESPEKDVVSWNTMISSCAMTNDFDSAFDLFQ 481

Query: 345 NMVDQGWKPNRITF 386
            ++  G +P+  ++
Sbjct: 482 ELLADGIRPDEYSY 495


>ref|XP_020080456.1| pentatricopeptide repeat-containing protein At4g21065-like [Ananas
           comosus]
          Length = 796

 Score =  185 bits (470), Expect = 3e-52
 Identities = 85/130 (65%), Positives = 110/130 (84%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           +++FD AF+LFQ++LA  ++PDEYS+SSVLNGCG S++LRQGMALHG ++KSG   SYPV
Sbjct: 468 TNDFDSAFDLFQELLADCIRPDEYSYSSVLNGCGISAHLRQGMALHGQIVKSGLYHSYPV 527

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQN+L+DAYGKCGC + A+KVFDE++  D+ISWNTIIS YGF+  P +AISLF  M + G
Sbjct: 528 VQNALMDAYGKCGCTEYAQKVFDEVDAKDTISWNTIISSYGFNTRPHEAISLFHEMQELG 587

Query: 363 WKPNRITFIA 392
           +KPNR+TFIA
Sbjct: 588 FKPNRVTFIA 597



 Score = 72.0 bits (175), Expect = 5e-12
 Identities = 36/114 (31%), Positives = 60/114 (52%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLI 200
           A +LF  ML   L+P+E++F   L        L  G  +H  ++KSG   S     ++L+
Sbjct: 126 ALDLFLLMLRSHLRPNEFTFPFALKSAAALDLLPLGHQIHSSLLKSGLFPSNVFCASALL 185

Query: 201 DAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           D Y K   + DAR VFD +     ++WN++I  Y  + F ++A+ L ++M + G
Sbjct: 186 DLYVKLATLGDARLVFDRIPHRTDVTWNSMICAYAQNGFLEEALRLMDSMAESG 239



 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
 Frame = +3

Query: 3   SHEFDRAFELFQQML------AVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGF 164
           S +  +AF++F++M       A  L P   S + +L  C + S    G+ +H +  + G 
Sbjct: 365 SGQTHKAFDVFREMAFQCCREAQSLSP--VSLTMILPACDSLSI--SGLEIHAYAYRGGM 420

Query: 165 SQSYPVVQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFE 344
            QS+  V N+L+  Y + G  + A KVF E    D +SWNT+IS    +   D A  LF+
Sbjct: 421 -QSHTSVSNALMAMYARRGDRERAHKVFQESPEKDVVSWNTMISSCAMTNDFDSAFDLFQ 479

Query: 345 NMVDQGWKPNRITF 386
            ++    +P+  ++
Sbjct: 480 ELLADCIRPDEYSY 493


>ref|XP_010234581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Brachypodium distachyon]
 gb|KQJ96025.1| hypothetical protein BRADI_3g20480v3 [Brachypodium distachyon]
          Length = 698

 Score =  169 bits (429), Expect = 9e-47
 Identities = 79/129 (61%), Positives = 98/129 (75%)
 Frame = +3

Query: 6   HEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVV 185
           H+FD AF+LF++M    +KPDEY+F+SVLN C  + YLRQ MALHG M+K G   SY   
Sbjct: 390 HDFDLAFKLFREMQHNYIKPDEYTFTSVLNACSFACYLRQAMALHGQMLKMGLCHSYLDD 449

Query: 186 QNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGW 365
            NSL+DAYGKCG ++DA+KVFDE +  D+ISWN IISCYG+SA P QAI  F  M DQG+
Sbjct: 450 MNSLMDAYGKCGSIEDAQKVFDETDRKDTISWNVIISCYGYSASPQQAIQRFHQMQDQGY 509

Query: 366 KPNRITFIA 392
           +PNR+TFIA
Sbjct: 510 RPNRVTFIA 518


>gb|OVA03451.1| Pentatricopeptide repeat [Macleaya cordata]
          Length = 681

 Score =  169 bits (427), Expect = 2e-46
 Identities = 78/130 (60%), Positives = 101/130 (77%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           +++FD+A +LF QM + D KPD+++FSSVLNGCG     RQG   HG++I+SGF + Y V
Sbjct: 356 NNDFDQAIKLFHQMHSEDTKPDKFTFSSVLNGCGELGAHRQGTVAHGYIIRSGFFEGYCV 415

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQN+L+D YGKCGC+++ARKVFDEME  D +SWNTII  YG +A P +AISLF  M +QG
Sbjct: 416 VQNALMDMYGKCGCIEEARKVFDEMEDRDDVSWNTIIKSYGLNAHPHEAISLFYEMQEQG 475

Query: 363 WKPNRITFIA 392
            +PNRITFIA
Sbjct: 476 RRPNRITFIA 485



 Score = 69.3 bits (168), Expect = 4e-11
 Identities = 37/120 (30%), Positives = 62/120 (51%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           S  +  A ELF +ML +   P+++++   L  C        G  +HG M+ +GF      
Sbjct: 8   SARYADAIELFSKMLVMGFLPNQFTYPFALKSCSILGLDEFGRQIHGVMVVNGFGYDVFA 67

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           V ++L+D Y K GC  DA K+FD +   + ++WN+++S Y  + + D A+   E M   G
Sbjct: 68  V-SALLDFYVKIGCFWDACKLFDRIPQRNEVTWNSMVSGYAQNGYWDHALEALELMGKSG 126



 Score = 63.9 bits (154), Expect = 3e-09
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
 Frame = +3

Query: 21  AFELFQQMLAV---DLKP-DEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQ 188
           AF++F+ M+     DLK   +   + +L  C  SS    G+ +HGH  + GF +S   V 
Sbjct: 259 AFQVFRDMVIQCGGDLKNLSKVPLTLLLPECSPSSLT--GLEIHGHAYRVGF-ESNTSVN 315

Query: 189 NSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWK 368
           N+LI  Y + G ++ + +VF      D +SWN+++  +  +   DQAI LF  M  +  K
Sbjct: 316 NALIAMYARRGDIESSERVFSRTPDKDVVSWNSMLYSFTINNDFDQAIKLFHQMHSEDTK 375

Query: 369 PNRITF 386
           P++ TF
Sbjct: 376 PDKFTF 381


>gb|PKA54108.1| Pentatricopeptide repeat-containing protein [Apostasia shenzhenica]
          Length = 805

 Score =  169 bits (428), Expect = 3e-46
 Identities = 80/130 (61%), Positives = 98/130 (75%)
 Frame = +3

Query: 3   SHEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           +H+ D+AFELFQQMLA   +PDE+SFSSVLN CG SS+     +LHG M+KSGF  S+ V
Sbjct: 487 AHDCDQAFELFQQMLAEGFEPDEFSFSSVLNACGLSSHFLHVTSLHGRMVKSGFFPSFVV 546

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           VQN+L+DAYGKCGC+ DA+K FDE +  D ISWNTIISCYGFS  P  A  LF+ M   G
Sbjct: 547 VQNALMDAYGKCGCICDAKKTFDETDLVDIISWNTIISCYGFSDAPKAAFLLFQKMKASG 606

Query: 363 WKPNRITFIA 392
            KPNR+TF++
Sbjct: 607 LKPNRVTFVS 616



 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 33/114 (28%), Positives = 54/114 (47%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLI 200
           A  LF  ML   L+P+E++F  VL           G  LH  ++KSGFS        +L+
Sbjct: 150 ALHLFLDMLVAGLRPNEFTFPVVLRCAALLGLFSFGQQLHTQLLKSGFSPDNVFCATALL 209

Query: 201 DAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           + Y K   + DA K+FD +      +WN++I+      F +  + + + M + G
Sbjct: 210 NLYAKVAPMADACKLFDRIPNRSEATWNSMITALVEKGFLENGMKMLQMMEEDG 263



 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
 Frame = +3

Query: 15  DRAFELFQQMLA---VDLKP-DEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPV 182
           + AF LF++M A    ++K       +S+L  C  SS  + G+ +H ++I+ G   S  +
Sbjct: 392 NEAFRLFREMAARCGFEVKTISRACLTSILPEC--SSMSKHGLEIHAYVIRKGLDSSTSI 449

Query: 183 VQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
             N+L+  Y K    +   K+F  +   D +SWNT+ + +      DQA  LF+ M+ +G
Sbjct: 450 -GNALMAMYAKRDDRESICKIFQRIIEKDLVSWNTMAAAHDC----DQAFELFQQMLAEG 504

Query: 363 WKPNRITF 386
           ++P+  +F
Sbjct: 505 FEPDEFSF 512


>gb|PIA42397.1| hypothetical protein AQUCO_02000090v1 [Aquilegia coerulea]
          Length = 813

 Score =  164 bits (415), Expect = 2e-44
 Identities = 71/125 (56%), Positives = 93/125 (74%)
 Frame = +3

Query: 18  RAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSL 197
           +A   F +M +  + PDE+++SSVL+ CG     RQG+ +HGH+IK GFS+   VVQNSL
Sbjct: 508 KALTYFDRMRSEGIHPDEFTYSSVLSACGEMGAHRQGLGMHGHIIKGGFSEGCLVVQNSL 567

Query: 198 IDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKPNR 377
           +D Y KCGCVDDAR +FDE++W D ISWNT+ISCYG + FP +A +LF+ M  QGW PNR
Sbjct: 568 VDMYAKCGCVDDARNLFDEIKWKDDISWNTMISCYGINDFPHEAFALFDEMRGQGWTPNR 627

Query: 378 ITFIA 392
           +TFIA
Sbjct: 628 VTFIA 632



 Score = 68.9 bits (167), Expect = 6e-11
 Identities = 35/117 (29%), Positives = 63/117 (53%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           ++ A ELF +M  +   P+E+++  VL  C     +     +HG MI +G+ Q      +
Sbjct: 158 YNDAVELFVEMWGLGFCPNEFTYPFVLKSCSVLGLVELAREIHGLMIVNGYQQDV-FAGS 216

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQG 362
           +L+D Y KCGC  DA K+FD +   + ++WN+++S Y  +   ++A+   + M   G
Sbjct: 217 ALLDLYLKCGCFGDACKLFDRIPQRNEVTWNSMVSGYAQNGNWEKAMEALKIMGKSG 273



 Score = 54.3 bits (129), Expect = 8e-06
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
 Frame = +3

Query: 9   EFDRAFELFQQMLAV---DLKP-DEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSY 176
           + + AF +F+ M+     + K   +   + +L  C  SS    G+ +H H  + GF +S 
Sbjct: 402 KINEAFRVFRDMIIQCGGEFKTLSKVPLTLLLPECSASSLT--GLEIHAHAYRVGF-ESN 458

Query: 177 PVVQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVD 356
             V N+LI  YG+   ++ + +VF      D ISWNT+IS Y  +    +A++ F+ M  
Sbjct: 459 TSVSNALIAMYGRRDKIEWSERVFTRAPEKDVISWNTMISGYVNNNDSVKALTYFDRMRS 518

Query: 357 QGWKPNRITF 386
           +G  P+  T+
Sbjct: 519 EGIHPDEFTY 528


>ref|XP_002458168.1| pentatricopeptide repeat-containing protein At4g21065 [Sorghum
           bicolor]
 gb|EES03288.1| hypothetical protein SORBI_3003G223000 [Sorghum bicolor]
          Length = 694

 Score =  159 bits (401), Expect = 8e-43
 Identities = 73/129 (56%), Positives = 94/129 (72%)
 Frame = +3

Query: 6   HEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVV 185
           H+FD +FELF++M   D +PD+Y+F+SVLN C  +   R  MALHG MI+ G   SY   
Sbjct: 378 HDFDLSFELFREMQRNDTRPDDYTFTSVLNACSFTCNHRTVMALHGQMIRMGLCHSYVDD 437

Query: 186 QNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGW 365
            NSL+DAYGKCG +D+A+ +FDE +  D+ISWN IISCYG+S FP QAI LF  M DQG+
Sbjct: 438 MNSLMDAYGKCGFIDEAQNIFDETDRKDTISWNIIISCYGYSGFPQQAIRLFHQMQDQGY 497

Query: 366 KPNRITFIA 392
           KP R+TFI+
Sbjct: 498 KPTRVTFIS 506


>gb|ONM40418.1| Pentatricopeptide (PPR) repeat-containing protein-like [Zea mays]
          Length = 552

 Score =  153 bits (386), Expect = 3e-41
 Identities = 71/129 (55%), Positives = 92/129 (71%)
 Frame = +3

Query: 6   HEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVV 185
           H+FD +FELF++M     +PD+Y+F+SVLN C  +   R  MALHG MI+ G   SY   
Sbjct: 238 HDFDLSFELFREMQRNGTRPDDYTFTSVLNACSFACNHRTVMALHGQMIRMGLCHSYVDD 297

Query: 186 QNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGW 365
            NSL+DAYGKCG + +A+K+FDE E  D++SWN IISCYG+S FP +AI LF  M DQ +
Sbjct: 298 MNSLMDAYGKCGFIAEAQKIFDETERKDTVSWNIIISCYGYSGFPQRAIRLFHQMQDQSY 357

Query: 366 KPNRITFIA 392
           KP R+TFIA
Sbjct: 358 KPTRVTFIA 366


>ref|XP_008675350.1| pentatricopeptide repeat-containing protein At4g16470 [Zea mays]
 gb|ONM40419.1| Pentatricopeptide (PPR) repeat-containing protein-like [Zea mays]
          Length = 696

 Score =  153 bits (386), Expect = 1e-40
 Identities = 71/129 (55%), Positives = 92/129 (71%)
 Frame = +3

Query: 6   HEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVV 185
           H+FD +FELF++M     +PD+Y+F+SVLN C  +   R  MALHG MI+ G   SY   
Sbjct: 382 HDFDLSFELFREMQRNGTRPDDYTFTSVLNACSFACNHRTVMALHGQMIRMGLCHSYVDD 441

Query: 186 QNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGW 365
            NSL+DAYGKCG + +A+K+FDE E  D++SWN IISCYG+S FP +AI LF  M DQ +
Sbjct: 442 MNSLMDAYGKCGFIAEAQKIFDETERKDTVSWNIIISCYGYSGFPQRAIRLFHQMQDQSY 501

Query: 366 KPNRITFIA 392
           KP R+TFIA
Sbjct: 502 KPTRVTFIA 510


>ref|XP_006660042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Oryza brachyantha]
          Length = 700

 Score =  151 bits (382), Expect = 4e-40
 Identities = 72/129 (55%), Positives = 92/129 (71%)
 Frame = +3

Query: 6   HEFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVV 185
           H++D +F+LF++M    ++PDEY+F+ VLN C  + YL Q MALHG M+K G   SY   
Sbjct: 394 HDYDVSFKLFREMQRNAVRPDEYTFTMVLNACSFACYLGQSMALHGQMMKMGLCDSYVDD 453

Query: 186 QNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGW 365
            NSL+ AYGKCG ++ A+KVFDE    D ISWN IISCYG+SA P QAI LF  M D+G+
Sbjct: 454 MNSLMSAYGKCGLLEAAQKVFDETNPKDVISWNIIISCYGYSALPWQAIPLFHQMQDEGY 513

Query: 366 KPNRITFIA 392
           KP R+TFIA
Sbjct: 514 KPTRVTFIA 522


>gb|KMZ69418.1| hypothetical protein ZOSMA_214G00060 [Zostera marina]
          Length = 726

 Score =  150 bits (380), Expect = 8e-40
 Identities = 73/130 (56%), Positives = 95/130 (73%), Gaps = 3/130 (2%)
 Frame = +3

Query: 9   EFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYP--- 179
           +FDRA  LF+QM++ +++PD YSF SVLN CG+SS L QGM+LH  +IK+G   S P   
Sbjct: 420 DFDRALSLFRQMISEEVRPDVYSFGSVLNACGHSSSLLQGMSLHCRIIKTGLFSSEPGCP 479

Query: 180 VVQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQ 359
           VV N+++D Y KCG  + ARK FDE+E  D ISWNT+IS Y ++A PD+A SLF  M DQ
Sbjct: 480 VVDNAVVDMYAKCGSTECARKAFDEIEEKDIISWNTVISMYAYNACPDKAFSLFSQMKDQ 539

Query: 360 GWKPNRITFI 389
           G+ P+RITFI
Sbjct: 540 GFTPDRITFI 549



 Score = 70.9 bits (172), Expect = 1e-11
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
 Frame = +3

Query: 21  AFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQNSLI 200
           A  LF QML  D+ P+ Y+F  +L        LR G  +H H++K G          +++
Sbjct: 67  AVALFLQMLHSDIPPNHYTFPFLLKSVSALGSLRLGHQIHTHILKFGCFPDNIYSSTAVL 126

Query: 201 DAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENM-VDQG 362
           D Y K G + DARK+FD +   ++  WN++I+CY      D+ + +F  M VD G
Sbjct: 127 DFYAKWGALGDARKLFDRIPDRNTAVWNSMITCYVQHGLLDETLDMFTAMEVDVG 181


>ref|XP_020529674.1| pentatricopeptide repeat-containing protein At4g21300 [Amborella
           trichopoda]
 ref|XP_011627322.2| pentatricopeptide repeat-containing protein At4g21300 [Amborella
           trichopoda]
          Length = 570

 Score =  130 bits (328), Expect = 6e-33
 Identities = 60/127 (47%), Positives = 86/127 (67%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           F++AF LF +M   D +PDE++  SVL  CG+ + ++ G ++H +  K GF      V+N
Sbjct: 259 FNQAFHLFSRMHTEDARPDEFTIPSVLQSCGHFASVQGGSSVHAYAFKGGFIDDL-CVEN 317

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKP 371
           SLID YGKCG V+ A KVF EM   D +SWN +ISCY  +  P++ +SLFE+M +QGW+P
Sbjct: 318 SLIDMYGKCGFVEFAEKVFREMRQRDFVSWNAMISCYAANKHPNETLSLFESMQNQGWRP 377

Query: 372 NRITFIA 392
           N +TF+A
Sbjct: 378 NGVTFVA 384



 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
 Frame = +3

Query: 6   HEFDRAFELFQQMLAVDL-KPDEYSFSSVLNGCGN--SSYLRQGMALHGHMIKSGFSQSY 176
           +  D+AFE+ ++M  +   +PD  + + +L       +   + G  +H +  ++G     
Sbjct: 153 NRLDQAFEMVREMKRLSSERPDRSTLTLLLPELHRLGTQASKLGDCIHAYTYRNGLELDT 212

Query: 177 PVVQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVD 356
            V  N+L+  YG+   ++ +RKVF+  +  D +SWNT++S Y  S + +QA  LF  M  
Sbjct: 213 SVF-NALVAMYGRSRRIEISRKVFERTQGKDIVSWNTMLSNYVNSGYFNQAFHLFSRMHT 271

Query: 357 QGWKPNRIT 383
           +  +P+  T
Sbjct: 272 EDARPDEFT 280


>gb|ERN16632.1| hypothetical protein AMTR_s00051p00085060 [Amborella trichopoda]
          Length = 654

 Score =  130 bits (328), Expect = 9e-33
 Identities = 60/127 (47%), Positives = 86/127 (67%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           F++AF LF +M   D +PDE++  SVL  CG+ + ++ G ++H +  K GF      V+N
Sbjct: 447 FNQAFHLFSRMHTEDARPDEFTIPSVLQSCGHFASVQGGSSVHAYAFKGGFIDDL-CVEN 505

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKP 371
           SLID YGKCG V+ A KVF EM   D +SWN +ISCY  +  P++ +SLFE+M +QGW+P
Sbjct: 506 SLIDMYGKCGFVEFAEKVFREMRQRDFVSWNAMISCYAANKHPNETLSLFESMQNQGWRP 565

Query: 372 NRITFIA 392
           N +TF+A
Sbjct: 566 NGVTFVA 572



 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 35/113 (30%), Positives = 58/113 (51%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           +     +F +ML  +  P+ ++   V   C     L     +H  + K+   Q    V +
Sbjct: 109 YSDVLNIFVEMLESNSLPNRFTLPFVFKSCAVLQCLGPVRDIHTLVFKAD-CQFDVYVCS 167

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENM 350
           SLIDAY KCG V +AR+VFD M   + ++WN++I+ Y  + F ++A+ L   M
Sbjct: 168 SLIDAYAKCGRVCEARRVFDRMGERNIVTWNSMIASYARNGFLEEAMCLLYEM 220



 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
 Frame = +3

Query: 6   HEFDRAFELFQQMLAVDL-KPDEYSFSSVLNGCGN--SSYLRQGMALHGHMIKSGFSQSY 176
           +  D+AFE+ ++M  +   +PD  + + +L       +   + G  +H +  ++G     
Sbjct: 341 NRLDQAFEMVREMKRLSSERPDRSTLTLLLPELHRLGTQASKLGDCIHAYTYRNGLELDT 400

Query: 177 PVVQNSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVD 356
            V  N+L+  YG+   ++ +RKVF+  +  D +SWNT++S Y  S + +QA  LF  M  
Sbjct: 401 SVF-NALVAMYGRSRRIEISRKVFERTQGKDIVSWNTMLSNYVNSGYFNQAFHLFSRMHT 459

Query: 357 QGWKPNRIT 383
           +  +P+  T
Sbjct: 460 EDARPDEFT 468


>pdb|5IWW|D Chain D, Crystal structure of RNA editing factor of designer
           PLS-type PPR/9R protein in complex with MORF9/RIP9
          Length = 347

 Score =  119 bits (298), Expect = 8e-30
 Identities = 59/126 (46%), Positives = 85/126 (67%)
 Frame = +3

Query: 9   EFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQ 188
           + D A +LF++M+   +KPDE++FSSVL  C     L  G  +HG++IKSGF +S  VV 
Sbjct: 133 KLDEALKLFEEMVEKGIKPDEFTFSSVLKACARLGALELGKQIHGYVIKSGF-ESNVVVY 191

Query: 189 NSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWK 368
           N+LID Y KCG +++ARKVFDEM   D +++NT+I     +   D+A+ LFE MV++G K
Sbjct: 192 NALIDMYSKCGLLEEARKVFDEMPEKDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK 251

Query: 369 PNRITF 386
           P+  TF
Sbjct: 252 PDEFTF 257



 Score =  117 bits (294), Expect = 3e-29
 Identities = 58/126 (46%), Positives = 84/126 (66%)
 Frame = +3

Query: 9   EFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQ 188
           + D A +LF++M+   +KPDE++FSSVL  C     L  G  +HG++IKSGF  +  VV 
Sbjct: 32  KLDEALKLFEEMVEKGIKPDEFTFSSVLKACARLGALELGKQIHGYVIKSGFEGNV-VVY 90

Query: 189 NSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWK 368
           N+LID Y KCG +++ARKVFDEM   D +++NT+I     +   D+A+ LFE MV++G K
Sbjct: 91  NALIDMYSKCGLLEEARKVFDEMPEKDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIK 150

Query: 369 PNRITF 386
           P+  TF
Sbjct: 151 PDEFTF 156



 Score = 97.1 bits (240), Expect = 2e-21
 Identities = 45/98 (45%), Positives = 66/98 (67%)
 Frame = +3

Query: 9   EFDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQ 188
           + D A +LF++M+   +KPDE++FSSVL  C     L  G  +HG++IKSGF +S  VV 
Sbjct: 234 KLDEALKLFEEMVEKGIKPDEFTFSSVLKACARLGALELGKQIHGYVIKSGF-ESNVVVY 292

Query: 189 NSLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCY 302
           N+LID Y KCG +++ARKVFDEM   D +++  ++  Y
Sbjct: 293 NALIDMYSKCGLLEEARKVFDEMPEKDELTYRRVVESY 330


>ref|XP_023641802.1| putative pentatricopeptide repeat-containing protein At3g23330
           isoform X2 [Capsella rubella]
          Length = 621

 Score =  112 bits (280), Expect = 3e-26
 Identities = 51/127 (40%), Positives = 79/127 (62%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           ++ A  LF+QM+   ++P   +FSSV+  C + + LR G  LHG++++ GF  +   + +
Sbjct: 230 YNEALRLFRQMVTTKVRPGPVAFSSVIPACAHLATLRLGKQLHGYVLRGGFGSNI-FISS 288

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKP 371
           SL+D Y KCG ++ ARK+FD M   D +SW  II  Y       +A+SLFE M +QG KP
Sbjct: 289 SLVDMYSKCGNINAARKIFDRMNVHDEVSWTAIIMGYALHGHGHEAVSLFEEMKEQGVKP 348

Query: 372 NRITFIA 392
           N++ F+A
Sbjct: 349 NKVAFVA 355



 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 38/125 (30%), Positives = 68/125 (54%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           ++ A  L ++M   D+KPD ++ SSVL        + +G  +HG+ I+ G       + +
Sbjct: 129 YEDALRLVREMGTTDIKPDAFTLSSVLPIFSEYVDVIKGKEIHGYAIRKGIDADV-YIGS 187

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKP 371
           SL+D Y K   ++D+ +VF  +   DSISWN++++ Y  +   ++A+ LF  MV    +P
Sbjct: 188 SLVDMYAKSARIEDSERVFSHLARRDSISWNSLVAGYVQNGRYNEALRLFRQMVTTKVRP 247

Query: 372 NRITF 386
             + F
Sbjct: 248 GPVAF 252


>ref|XP_006297059.1| putative pentatricopeptide repeat-containing protein At3g23330
           isoform X1 [Capsella rubella]
 gb|EOA29957.1| hypothetical protein CARUB_v10013060mg [Capsella rubella]
          Length = 730

 Score =  112 bits (280), Expect = 3e-26
 Identities = 51/127 (40%), Positives = 79/127 (62%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           ++ A  LF+QM+   ++P   +FSSV+  C + + LR G  LHG++++ GF  +   + +
Sbjct: 339 YNEALRLFRQMVTTKVRPGPVAFSSVIPACAHLATLRLGKQLHGYVLRGGFGSNI-FISS 397

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKP 371
           SL+D Y KCG ++ ARK+FD M   D +SW  II  Y       +A+SLFE M +QG KP
Sbjct: 398 SLVDMYSKCGNINAARKIFDRMNVHDEVSWTAIIMGYALHGHGHEAVSLFEEMKEQGVKP 457

Query: 372 NRITFIA 392
           N++ F+A
Sbjct: 458 NKVAFVA 464



 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 38/125 (30%), Positives = 68/125 (54%)
 Frame = +3

Query: 12  FDRAFELFQQMLAVDLKPDEYSFSSVLNGCGNSSYLRQGMALHGHMIKSGFSQSYPVVQN 191
           ++ A  L ++M   D+KPD ++ SSVL        + +G  +HG+ I+ G       + +
Sbjct: 238 YEDALRLVREMGTTDIKPDAFTLSSVLPIFSEYVDVIKGKEIHGYAIRKGIDADV-YIGS 296

Query: 192 SLIDAYGKCGCVDDARKVFDEMEWSDSISWNTIISCYGFSAFPDQAISLFENMVDQGWKP 371
           SL+D Y K   ++D+ +VF  +   DSISWN++++ Y  +   ++A+ LF  MV    +P
Sbjct: 297 SLVDMYAKSARIEDSERVFSHLARRDSISWNSLVAGYVQNGRYNEALRLFRQMVTTKVRP 356

Query: 372 NRITF 386
             + F
Sbjct: 357 GPVAF 361