BLASTX nr result
ID: Ophiopogon26_contig00030634
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00030634
(551 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009242020.1| NADH dehydrogenase subunit 4 (mitochondrion)... 83 5e-25
gb|OMP02494.1| hypothetical protein CCACVL1_02786 [Corchorus cap... 84 5e-17
gb|OMO71560.1| hypothetical protein COLO4_28184 [Corchorus olito... 60 2e-16
ref|YP_009242008.1| NADH dehydrogenase subunit 4 (mitochondrion)... 86 3e-16
gb|AFK38641.1| unknown [Medicago truncatula] 69 2e-12
gb|EEF27697.1| conserved hypothetical protein [Ricinus communis] 55 4e-07
gb|PKI40735.1| hypothetical protein CRG98_038873 [Punica granatum] 55 6e-06
>ref|YP_009242020.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
gb|AMQ23374.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
Length = 2992
Score = 83.2 bits (204), Expect(2) = 5e-25
Identities = 51/81 (62%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -3
Query: 240 LNKIKGATIPPFPHFCISFSIWPAS*KMRG-LVDSK*LRKGRSIA*LFLSRVSFRRKGLR 64
LNKIKGATIPP P F ISFSIWPAS KM G L+ S R G+ F SFRRKGLR
Sbjct: 2709 LNKIKGATIPPSPIFFISFSIWPASSKMIGLLIRSYYERVGQLHCYFFF---SFRRKGLR 2765
Query: 63 IPNPVGPDGFVCPSLANRIPA 1
I VGPDGFVCP L N P+
Sbjct: 2766 ILYLVGPDGFVCPCLVNPRPS 2786
Score = 58.9 bits (141), Expect(2) = 5e-25
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = -2
Query: 550 GTGEGVSIDPF*DSNXXXXXXXXXXXXXXXXXXXXSKVRLLP-ASTE*VYFVPPGGHIDR 374
GTGEGVSID F DSN ++ ASTE VYFV GGHIDR
Sbjct: 2607 GTGEGVSIDLFSDSNSRHARRFFYSLSLGLGSPDSLRLGYYQLASTEEVYFVLSGGHIDR 2666
Query: 373 NPERVERKXXXXXXXXXXXXXXXXXXXLGCKPRKPLVLK*GLHRLKQNK 227
NPERV+RK LG KP KPLVL G L + K
Sbjct: 2667 NPERVQRK--PYPQLQLLALQRALILRLGWKPTKPLVLLSGEQPLNKIK 2713
>gb|OMP02494.1| hypothetical protein CCACVL1_02786 [Corchorus capsularis]
Length = 159
Score = 83.6 bits (205), Expect = 5e-17
Identities = 50/86 (58%), Positives = 51/86 (59%)
Frame = +1
Query: 292 VAPFESKPFEAPVVVAVGRAFVQLAPGSDLYDLRAVQSTPIP*RQVVT*PLMSRGSRALH 471
VAP ESKPFEAPVVVAVGRAFV +APG DLYDLRA
Sbjct: 12 VAPLESKPFEAPVVVAVGRAFVLIAPGFDLYDLRA------------------------- 46
Query: 472 SINGKISVRGVSWNPRKDRLRLPPRS 549
ISVRGV NPRKDRLRLPPRS
Sbjct: 47 -----ISVRGVIRNPRKDRLRLPPRS 67
>gb|OMO71560.1| hypothetical protein COLO4_28184 [Corchorus olitorius]
Length = 128
Score = 59.7 bits (143), Expect(2) = 2e-16
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = -3
Query: 549 GPGRESQSILSRIPTHATHGDLSIDRVEGSAPPTHQRL 436
GPGRESQSI SRIP HATHGDLSIDR+ APP ++ L
Sbjct: 64 GPGRESQSIFSRIPYHATHGDLSIDRLRERAPPLNRLL 101
Score = 53.5 bits (127), Expect(2) = 2e-16
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = -2
Query: 442 KVRLLPASTE*VYFVPPGGHIDRNPER 362
KVRLLPASTE VYFVP GGHIDRNPER
Sbjct: 102 KVRLLPASTEEVYFVPHGGHIDRNPER 128
>ref|YP_009242008.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
gb|AMQ23370.1| NADH dehydrogenase subunit 4 (mitochondrion) [Oryza minuta]
Length = 2992
Score = 86.3 bits (212), Expect = 3e-16
Identities = 68/159 (42%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Frame = -3
Query: 465 GSAPPTHQRLGYYLPLRNRCTLYRPEVI*IGTRSELNESPTHSYNYRRFKGLRFEGRY-- 292
G P RLGYY L + +Y + G + N Y + + L + Y
Sbjct: 2635 GLGSPDSLRLGYY-QLASTEEVY---FVLSGGHIDRNPERVQRKPYPQLQLLALQRAYIL 2690
Query: 291 -WGVSPESLWYLSRDYIALNKIKGATIPPFPHFCISFSIWPAS*KMRG-LVDSK*LRKGR 118
+G P L LNKIKGATIPP P F ISFSIWPAS KM G L+ S R G+
Sbjct: 2691 RYGWKPSKPLVLYSGEQPLNKIKGATIPPSPIFFISFSIWPASSKMIGLLIRSLYERVGQ 2750
Query: 117 SIA*LFLSRVSFRRKGLRIPNPVGPDGFVCPSLANRIPA 1
F SFRRKGLRI VGPDGFVCP L N P+
Sbjct: 2751 YHCYFFF---SFRRKGLRILYLVGPDGFVCPCLVNPRPS 2786
Score = 58.9 bits (141), Expect = 9e-07
Identities = 45/109 (41%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = -2
Query: 550 GTGEGVSIDPF*DSNXXXXXXXXXXXXXXXXXXXXSKVRLLP-ASTE*VYFVPPGGHIDR 374
GTGEGVSID F DSN ++ ASTE VYFV GGHIDR
Sbjct: 2607 GTGEGVSIDLFYDSNSRHARRFFYRYSLGLGSPDSLRLGYYQLASTEEVYFVLSGGHIDR 2666
Query: 373 NPERVERKXXXXXXXXXXXXXXXXXXXLGCKPRKPLVLK*GLHRLKQNK 227
NPERV+RK G KP KPLVL G L + K
Sbjct: 2667 NPERVQRK--PYPQLQLLALQRAYILRYGWKPSKPLVLYSGEQPLNKIK 2713
>gb|AFK38641.1| unknown [Medicago truncatula]
Length = 57
Score = 68.9 bits (167), Expect = 2e-12
Identities = 38/52 (73%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Frame = +2
Query: 62 MRRPFLRKETRERKSYAIDRPFRSYFESTRPLIF---HEAGQIENEMQKWGK 208
MRRPFLRKET E KSYAIDRPFRS FES F EAG+IENEMQK+GK
Sbjct: 1 MRRPFLRKETGEIKSYAIDRPFRSDFESIVLSFFSILFEAGRIENEMQKYGK 52
>gb|EEF27697.1| conserved hypothetical protein [Ricinus communis]
Length = 52
Score = 54.7 bits (130), Expect = 4e-07
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +3
Query: 66 EGLSFERRPGKERAMLLTDPFVVTSNR 146
EGLSFE+RPGKERAMLLTDPFVVTSN+
Sbjct: 26 EGLSFEKRPGKERAMLLTDPFVVTSNQ 52
>gb|PKI40735.1| hypothetical protein CRG98_038873 [Punica granatum]
Length = 245
Score = 55.5 bits (132), Expect = 6e-06
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = -3
Query: 549 GPGRESQSILSRIPTHATHGDLSIDRVEGSAPP 451
GPGRES+SI SRIPTHATHGDLSIDR A P
Sbjct: 141 GPGRESKSIFSRIPTHATHGDLSIDRAVVEAKP 173