BLASTX nr result
ID: Ophiopogon26_contig00029782
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00029782
(360 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_054552.1| hypothetical protein NitaCp078 [Nicotiana tabac... 68 9e-13
ref|YP_009176062.1| hypothetical chloroplast ycf1 (chloroplast) ... 66 5e-10
ref|NP_904157.1| hypothetical protein AmtrCp086 [Amborella trich... 64 2e-09
ref|YP_009433250.1| hypothetical chloroplast RF19 (chloroplast) ... 64 3e-09
ref|YP_007353973.1| Ycf1 protein (chloroplast) [Tectona grandis]... 61 3e-08
gb|AKJ83510.1| Ycf1 (chloroplast) [Alocasia macrorrhizos] 58 3e-07
gb|AFM77025.1| Ycf1, partial (chloroplast) [Alocasia sp. ASPNZ01] 54 4e-07
gb|AFM77024.1| Ycf1, partial (chloroplast) [Leucocasia gigantea] 54 4e-07
gb|AFM77028.1| Ycf1, partial (chloroplast) [Colocasia esculenta] 51 3e-06
gb|AFM77029.1| Ycf1, partial (chloroplast) [Colocasia formosana]... 51 5e-06
gb|AFM77023.1| Ycf1, partial (chloroplast) [Colocasia affinis va... 51 5e-06
gb|AFM77026.1| Ycf1, partial (chloroplast) [Colocasia fallax] 50 1e-05
>ref|NP_054552.1| hypothetical protein NitaCp078 [Nicotiana tabacum]
ref|NP_054565.1| hypothetical protein NitaCp091 [Nicotiana tabacum]
ref|YP_358732.1| hypothetical protein NisyCp089 [Nicotiana sylvestris]
ref|YP_358746.1| hypothetical protein NisyCp103 [Nicotiana sylvestris]
ref|YP_398918.1| hypothetical protein NitoCp088 [Nicotiana tomentosiformis]
ref|YP_398932.1| hypothetical protein NitoCp102 [Nicotiana tomentosiformis]
ref|YP_004891661.1| unnamed protein product (chloroplast) [Nicotiana undulata]
ref|YP_004891675.1| unnamed protein product (chloroplast) [Nicotiana undulata]
emb|CAA26288.1| hypothetical protein (chloroplast) [Nicotiana tabacum]
emb|CAA77393.1| hypothetical protein (chloroplast) [Nicotiana tabacum]
gb|AAA84690.1| unknown (chloroplast) [Nicotiana tabacum]
emb|CAA77400.1| hypothetical protein (chloroplast) [Nicotiana tabacum]
dbj|BAE46709.1| hypothetical protein (chloroplast) [Nicotiana sylvestris]
dbj|BAE46723.1| hypothetical protein (chloroplast) [Nicotiana sylvestris]
dbj|BAE48058.1| hypothetical protein (chloroplast) [Nicotiana tomentosiformis]
dbj|BAE48072.1| hypothetical protein (chloroplast) [Nicotiana tomentosiformis]
gb|AEO95619.1| hypothetical protein (chloroplast) [Nicotiana undulata]
gb|AEO95646.1| hypothetical protein (chloroplast) [Nicotiana undulata]
gb|AEO95728.1| hypothetical protein [synthetic construct]
gb|AEO95754.1| hypothetical protein [synthetic construct]
gb|AMM05595.1| hypothetical protein (plastid) [Nicotiana tabacum]
prf||1211235CK ORF 75
Length = 75
Score = 68.2 bits (165), Expect = 9e-13
Identities = 39/47 (82%), Positives = 39/47 (82%), Gaps = 3/47 (6%)
Frame = +3
Query: 228 MRHGTEPLRRSSGSYEGSFGL---MG*ERELNSMRSNLPLFLSSSVV 359
MRH EPLRRSSGSYEGSF L MG ERELNSMRSNL LFLSSSVV
Sbjct: 1 MRHVREPLRRSSGSYEGSFELILVMGWERELNSMRSNLLLFLSSSVV 47
>ref|YP_009176062.1| hypothetical chloroplast ycf1 (chloroplast) [Ficus racemosa]
gb|ALI30748.1| hypothetical chloroplast ycf1 (chloroplast) [Ficus racemosa]
Length = 1924
Score = 65.9 bits (159), Expect = 5e-10
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = -3
Query: 118 SISFYIWKVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
S FY WKV KSSYNN EIEIEKKKGRFVMI +SF+LGN
Sbjct: 2 SFYFYRWKVKKSSYNNPEIEIEKKKGRFVMIFQSFILGN 40
>ref|NP_904157.1| hypothetical protein AmtrCp086 [Amborella trichopoda]
emb|CAD45164.1| ycf1 (chloroplast) [Amborella trichopoda]
Length = 1829
Score = 63.9 bits (154), Expect = 2e-09
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = -3
Query: 118 SISFYIWKVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
SISFYIWKV KSSYNNRE EKK+ F+MILKSFLLGN
Sbjct: 7 SISFYIWKVKKSSYNNRESATEKKERGFLMILKSFLLGN 45
>ref|YP_009433250.1| hypothetical chloroplast RF19 (chloroplast) [Pedicularis
cheilanthifolia]
gb|ATD53119.1| hypothetical chloroplast RF19 (chloroplast) [Pedicularis
cheilanthifolia]
Length = 422
Score = 63.5 bits (153), Expect = 3e-09
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -3
Query: 109 FYIWKVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
FYIWKV KSSYNN EI IEKKKGRF++I +SFLLGN
Sbjct: 12 FYIWKVEKSSYNNPEIAIEKKKGRFMIIFQSFLLGN 47
>ref|YP_007353973.1| Ycf1 protein (chloroplast) [Tectona grandis]
emb|CCP47191.1| YCF1 protein (chloroplast) [Tectona grandis]
emb|CCP47280.1| YCF1 protein (chloroplast) [Tectona grandis]
emb|CCP47369.1| YCF1 protein (chloroplast) [Tectona grandis]
Length = 1898
Score = 60.8 bits (146), Expect = 3e-08
Identities = 31/39 (79%), Positives = 32/39 (82%), Gaps = 3/39 (7%)
Frame = -3
Query: 109 FYIWKVNKSSYNNREIEIEK---KKGRFVMILKSFLLGN 2
FYIWKV KSSYNN EI IEK KKGRFVMI +SFLLGN
Sbjct: 12 FYIWKVQKSSYNNPEIAIEKKKEKKGRFVMIFQSFLLGN 50
>gb|AKJ83510.1| Ycf1 (chloroplast) [Alocasia macrorrhizos]
Length = 1862
Score = 58.2 bits (139), Expect = 3e-07
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = -3
Query: 97 KVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
KV +SSYNNREI IEKKKGRFVMI KSFLLGN
Sbjct: 2 KVKESSYNNREIAIEKKKGRFVMIFKSFLLGN 33
>gb|AFM77025.1| Ycf1, partial (chloroplast) [Alocasia sp. ASPNZ01]
Length = 70
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -3
Query: 97 KVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
KV KSSYNNREI I+KK+ RFVMILK FLLGN
Sbjct: 2 KVKKSSYNNREIAIQKKRRRFVMILKYFLLGN 33
>gb|AFM77024.1| Ycf1, partial (chloroplast) [Leucocasia gigantea]
Length = 70
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -3
Query: 97 KVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
KV KSSYNNREI I+KK+ RFVMILK FLLGN
Sbjct: 2 KVKKSSYNNREIAIQKKRRRFVMILKFFLLGN 33
>gb|AFM77028.1| Ycf1, partial (chloroplast) [Colocasia esculenta]
Length = 70
Score = 51.2 bits (121), Expect = 3e-06
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -3
Query: 97 KVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
KV+KSSYNNREI +KK+ RFVMILK FLLGN
Sbjct: 2 KVSKSSYNNREIARQKKRRRFVMILKFFLLGN 33
>gb|AFM77029.1| Ycf1, partial (chloroplast) [Colocasia formosana]
gb|AFM77030.1| Ycf1, partial (chloroplast) [Colocasia esculenta var. fontanesii]
gb|AFM77031.1| Ycf1, partial (chloroplast) [Colocasia esculenta]
gb|AFM77032.1| Ycf1, partial (chloroplast) [Colocasia esculenta]
gb|AFM77033.1| Ycf1, partial (chloroplast) [Colocasia esculenta]
gb|AFM77034.1| Ycf1, partial (chloroplast) [Colocasia esculenta]
gb|AFM77035.1| Ycf1, partial (chloroplast) [Colocasia esculenta]
gb|AFM77036.1| Ycf1, partial (chloroplast) [Colocasia esculenta]
Length = 70
Score = 50.8 bits (120), Expect = 5e-06
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -3
Query: 97 KVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
KV KSSYNNREI +KK+ RFVMILK FLLGN
Sbjct: 2 KVKKSSYNNREIARQKKRRRFVMILKFFLLGN 33
>gb|AFM77023.1| Ycf1, partial (chloroplast) [Colocasia affinis var. jenningsii]
gb|AFM77027.1| Ycf1, partial (chloroplast) [Remusatia vivipara]
Length = 70
Score = 50.8 bits (120), Expect = 5e-06
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -3
Query: 97 KVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
KV KSSYNNREI +KK+ RFVMILK FLLGN
Sbjct: 2 KVKKSSYNNREIARQKKRRRFVMILKFFLLGN 33
>gb|AFM77026.1| Ycf1, partial (chloroplast) [Colocasia fallax]
Length = 70
Score = 50.1 bits (118), Expect = 1e-05
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = -3
Query: 97 KVNKSSYNNREIEIEKKKGRFVMILKSFLLGN 2
KV KSSYNNREI +KK+ RFVMILK F+LGN
Sbjct: 2 KVKKSSYNNREIARQKKRRRFVMILKFFILGN 33