BLASTX nr result

ID: Ophiopogon26_contig00029535 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00029535
         (1160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAV59897.1| hypothetical protein CFOL_v3_03428 [Cephalotus f...    59   5e-06
dbj|GAV79549.1| hypothetical protein CFOL_v3_23014 [Cephalotus f...    58   7e-06

>dbj|GAV59897.1| hypothetical protein CFOL_v3_03428 [Cephalotus follicularis]
          Length = 262

 Score = 58.5 bits (140), Expect = 5e-06
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 11/186 (5%)
 Frame = +1

Query: 1   IVMHNLLPKQGEYDRARSTVPILTYCILVGIPVNIPRLLFEQLRDASDATRVRGLPFGML 180
           +++H LLP  G Y +       L +CI+  I  + P L+   +  A    +   LPFG +
Sbjct: 18  LIVHQLLPTGGGYAKLSRMQAFLMWCIISKIKFSYPLLMLHTMVRAF-TQKKSVLPFGCI 76

Query: 181 LTKLFKTWSIPLAGQQTESPPKPIDY--------GFLARKQAHT---RGEQAXXXXXXXX 327
           LTKLF+   I L G+      K   Y        G+  R    T   + +Q         
Sbjct: 77  LTKLFRYHKIRLEGEIGTKLKKEDTYNKSTLNRMGWKKRDGNWTYCPKSDQGQKFEREEH 136

Query: 328 XXINPEGFEEPSGDLPPPTFTAGSSSSSHPRFEDMFQDMSSRFENLINSRFDTLSTTIQS 507
             I P   +E      PP  T GSSS+S   ++ + + MS+RF+ L N+RFD++  +I+ 
Sbjct: 137 EEIPPWEAQE-----APPAQTHGSSSTS--GYDRIMEFMSARFDAL-NTRFDSMEASIEG 188

Query: 508 YQQQLD 525
             QQ++
Sbjct: 189 KFQQVN 194


>dbj|GAV79549.1| hypothetical protein CFOL_v3_23014 [Cephalotus follicularis]
          Length = 263

 Score = 58.2 bits (139), Expect = 7e-06
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 12/188 (6%)
 Frame = +1

Query: 1   IVMHNLLPKQGEYDRARSTVPILTYCILVGIPVNIPRLLFEQLRDASDATRVRGLPFGML 180
           +++H LLP  G Y +       L +CI++ +    P LL   +   +   +   LPFG +
Sbjct: 18  LIVHQLLPTGGGYAKLSRMQAFLMWCIILKVEFCYP-LLMLHIMVRAFTQKKSVLPFGSI 76

Query: 181 LTKLFKTWSIPLAGQQTESPPKPIDYGFLA------RKQAH-----TRGEQAXXXXXXXX 327
           LTK+F+   + L G+      K   Y          +KQ        + +Q         
Sbjct: 77  LTKIFRHHEVGLEGEIGTKLKKEDTYNKSTLNRMGWKKQGGIWTYCLKADQGQRIEREEQ 136

Query: 328 XXINP-EGFEEPSGDLPPPTFTAGSSSSSHPRFEDMFQDMSSRFENLINSRFDTLSTTIQ 504
             I P E  EEP      PT   GSSS+S   ++ M + MS+RF+ L NSRFD++  +I+
Sbjct: 137 EEIPPWEAQEEPQ-----PTQVQGSSSTSD--YDRMIEFMSARFDAL-NSRFDSMEASIE 188

Query: 505 SYQQQLDI 528
           S   Q+++
Sbjct: 189 SKFGQVNL 196


Top