BLASTX nr result
ID: Ophiopogon26_contig00028667
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00028667
(657 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP59836.1| Retrovirus-related Pol polyprotein from transposo... 244 9e-78
gb|KYP36589.1| Retrovirus-related Pol polyprotein from transposo... 251 3e-76
gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposo... 251 1e-74
gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposo... 251 3e-74
gb|KYP64290.1| Retrovirus-related Pol polyprotein from transposo... 251 1e-73
gb|PNX71449.1| retrotransposon-related protein, partial [Trifoli... 239 2e-71
gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus] 238 7e-69
gb|PPD96412.1| hypothetical protein GOBAR_DD06575 [Gossypium bar... 237 2e-68
gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo... 226 1e-67
gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-... 225 1e-67
emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera] 233 2e-67
gb|PHT46584.1| hypothetical protein CQW23_15742 [Capsicum baccatum] 222 7e-67
gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subc... 226 5e-66
gb|AAM94928.1| putative polyprotein [Oryza sativa Japonica Group] 223 7e-66
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ... 229 1e-65
dbj|GAU11010.1| hypothetical protein TSUD_113030 [Trifolium subt... 222 1e-65
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] >gi|1... 228 2e-65
gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-... 223 3e-65
dbj|GAU47690.1| hypothetical protein TSUD_245810 [Trifolium subt... 228 4e-65
gb|AAM00978.1|AC090482_7 Putative retrovirus-related pol polypro... 219 4e-65
>gb|KYP59836.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 290
Score = 244 bits (623), Expect = 9e-78
Identities = 117/177 (66%), Positives = 144/177 (81%), Gaps = 2/177 (1%)
Frame = +2
Query: 131 KRIRKQKDFGDDFITFNVEGDPQTFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLP 310
KR RK+ FG DF T+ VE DP +FSEA+ S DA+ WKEAI E+DS+ +N TW L+DLP
Sbjct: 9 KRQRKETSFGSDFYTYLVENDPISFSEAISSSDAIFWKEAIRIEIDSIKENNTWTLVDLP 68
Query: 311 EGARHISCKWIFKKKLRPDGTIEKFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIA 490
+GA+ I CKWIFK+K PDG+IEK+KARLVAKGF+QK+DIDFFD +A V RI++IRVLIA
Sbjct: 69 KGAKPIGCKWIFKRKYNPDGSIEKYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIA 128
Query: 491 WAAINRFIVHQMDVKTTFLNGDLTEEIYMEKPEGLDTPA--NQVCRLLKSLYGLKQA 655
A+I+R ++HQMDVKT FLNG+L EEIYM +PEG + P N+VCRLLKSLYGLKQA
Sbjct: 129 LASIHRLVIHQMDVKTAFLNGELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQA 185
>gb|KYP36589.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 655
Score = 251 bits (641), Expect = 3e-76
Identities = 125/214 (58%), Positives = 159/214 (74%), Gaps = 2/214 (0%)
Frame = +2
Query: 20 PENTDLSTSQNEPVPLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQ 199
P + ++TS +P PLE ++ + S KR RK+ FG DF T+ VE DP
Sbjct: 119 PLKSSINTSSTQPSPLETSSEHMFEDLRRS-------KRQRKETSFGSDFYTYLVENDPI 171
Query: 200 TFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIE 379
+FSEA+ S DA+ WKEAI E+DS+ +N TW L+DLP+GA+ I CKWIFK+K PDG+IE
Sbjct: 172 SFSEAISSSDAIFWKEAIRIEIDSINENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIE 231
Query: 380 KFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDL 559
K+KARLVAKGF+QK+DIDFFD +A V RI++IRVLIA A+I+R ++HQMDVKT FLNG+L
Sbjct: 232 KYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNGEL 291
Query: 560 TEEIYMEKPEGLDTPA--NQVCRLLKSLYGLKQA 655
EEIYM +PEG + P N+VCRLLKSLYGLKQA
Sbjct: 292 EEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQA 325
>gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 900
Score = 251 bits (642), Expect = 1e-74
Identities = 125/214 (58%), Positives = 159/214 (74%), Gaps = 2/214 (0%)
Frame = +2
Query: 20 PENTDLSTSQNEPVPLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQ 199
P + ++TS +P PLE ++ + S KR RK+ FG DF T+ VE DP
Sbjct: 328 PLKSSINTSSTQPSPLETSSEHMFEDLRRS-------KRQRKETSFGSDFYTYLVENDPI 380
Query: 200 TFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIE 379
+FSEA+ S DA+ WKEAI E+DS+ +N TW L+DLP+GA+ I CKWIFK+K PDG+IE
Sbjct: 381 SFSEAISSSDAIFWKEAIRIEIDSIKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIE 440
Query: 380 KFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDL 559
K+KARLVAKGF+QK+DIDFFD +A V RI++IRVLIA A+I+R ++HQMDVKT FLNG+L
Sbjct: 441 KYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNGEL 500
Query: 560 TEEIYMEKPEGLDTPA--NQVCRLLKSLYGLKQA 655
EEIYM +PEG + P N+VCRLLKSLYGLKQA
Sbjct: 501 EEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQA 534
>gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1012
Score = 251 bits (642), Expect = 3e-74
Identities = 125/214 (58%), Positives = 159/214 (74%), Gaps = 2/214 (0%)
Frame = +2
Query: 20 PENTDLSTSQNEPVPLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQ 199
P + ++TS +P PLE ++ + S KR RK+ FG DF T+ VE DP
Sbjct: 440 PLKSSINTSSTQPSPLETSSEHMFEDLRRS-------KRQRKETSFGSDFYTYLVENDPI 492
Query: 200 TFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIE 379
+FSEA+ S DA+ WKEAI E+DS+ +N TW L+DLP+GA+ I CKWIFK+K PDG+IE
Sbjct: 493 SFSEAISSSDAIFWKEAIRIEIDSIKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIE 552
Query: 380 KFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDL 559
K+KARLVAKGF+QK+DIDFFD +A V RI++IRVLIA A+I+R ++HQMDVKT FLNG+L
Sbjct: 553 KYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNGEL 612
Query: 560 TEEIYMEKPEGLDTPA--NQVCRLLKSLYGLKQA 655
EEIYM +PEG + P N+VCRLLKSLYGLKQA
Sbjct: 613 EEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQA 646
>gb|KYP64290.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1215
Score = 251 bits (642), Expect = 1e-73
Identities = 125/214 (58%), Positives = 159/214 (74%), Gaps = 2/214 (0%)
Frame = +2
Query: 20 PENTDLSTSQNEPVPLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQ 199
P + ++TS +P PLE ++ + S KR RK+ FG DF T+ VE DP
Sbjct: 665 PLKSSINTSSTQPSPLETSSEHMFEDLRRS-------KRQRKETSFGSDFYTYLVENDPI 717
Query: 200 TFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIE 379
+FSEA+ S DA+ WKEAI E+DS+ +N TW L+DLP+GA+ I CKWIFK+K PDG+IE
Sbjct: 718 SFSEAISSSDAIFWKEAIRIEIDSIKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIE 777
Query: 380 KFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDL 559
K+KARLVAKGF+QK+DIDFFD +A V RI++IRVLIA A+I+R ++HQMDVKT FLNG+L
Sbjct: 778 KYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNGEL 837
Query: 560 TEEIYMEKPEGLDTPA--NQVCRLLKSLYGLKQA 655
EEIYM +PEG + P N+VCRLLKSLYGLKQA
Sbjct: 838 EEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQA 871
>gb|PNX71449.1| retrotransposon-related protein, partial [Trifolium pratense]
Length = 675
Score = 239 bits (609), Expect = 2e-71
Identities = 112/193 (58%), Positives = 148/193 (76%), Gaps = 5/193 (2%)
Frame = +2
Query: 92 QEKQASEDVEPPPKR---IRKQKDFGDDFITFNVEGDPQTFSEAMQSRDALLWKEAIEDE 262
+ S D E P+R +RK+ + GDDF F V+GDP T+SEA+ S D WKEAI++E
Sbjct: 392 ESNSCSNDFEREPRRSTRVRKETNLGDDFYIFLVDGDPLTYSEAISSPDGPFWKEAIDNE 451
Query: 263 MDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIEKFKARLVAKGFSQKEDIDFFD 442
+ S++ N TWE++DLP+GA+ I CKWIFKKKL+PDG++EK+KARLVAKG++QK+ D+FD
Sbjct: 452 IHSIMSNHTWEIVDLPQGAKPIGCKWIFKKKLKPDGSVEKYKARLVAKGYTQKKGFDYFD 511
Query: 443 IYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDLTEEIYMEKPEGLDTPA--NQV 616
Y+ V R+ +IRV IA A+I+ ++HQMDVKT FLNGDL EEIYM++PEG P N+V
Sbjct: 512 TYSPVARMTSIRVAIALASIHNLVIHQMDVKTAFLNGDLEEEIYMDQPEGFVVPGKENKV 571
Query: 617 CRLLKSLYGLKQA 655
CRL+KSLYGLKQA
Sbjct: 572 CRLVKSLYGLKQA 584
>gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus]
Length = 1330
Score = 238 bits (608), Expect = 7e-69
Identities = 120/208 (57%), Positives = 148/208 (71%), Gaps = 24/208 (11%)
Frame = +2
Query: 104 ASEDVEPPPK-----RIRKQKDFGDDF-----------------ITFNVEGDPQTFSEAM 217
A + ++ PP+ R RK K FGDDF FN+E DP+T+SEAM
Sbjct: 767 ADQVIDTPPELRRSGRARKAKSFGDDFQLYLVEGSRDEIKIQYQYCFNIEEDPKTYSEAM 826
Query: 218 QSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIEKFKARL 397
SRD WKEAI DEMDS++QN TW+L DLP G + + CKWIFKKK++ DG+IEKFKARL
Sbjct: 827 ASRDVAFWKEAINDEMDSIMQNNTWKLSDLPPGCKPLGCKWIFKKKMKVDGSIEKFKARL 886
Query: 398 VAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDLTEEIYM 577
V +GF QKE ID+FD YA V RI+TIR+L+A AAI+ ++HQMDVKT FLNGDL EEIYM
Sbjct: 887 VIQGFRQKEGIDYFDTYAPVARISTIRLLVALAAIHNLVIHQMDVKTAFLNGDLDEEIYM 946
Query: 578 EKPEGLDTPANQ--VCRLLKSLYGLKQA 655
++PEG P N+ VC+L+KSLYGLKQA
Sbjct: 947 KQPEGFVMPGNEHKVCKLVKSLYGLKQA 974
>gb|PPD96412.1| hypothetical protein GOBAR_DD06575 [Gossypium barbadense]
Length = 1355
Score = 237 bits (604), Expect = 2e-68
Identities = 127/233 (54%), Positives = 164/233 (70%), Gaps = 21/233 (9%)
Frame = +2
Query: 20 PENTDLSTSQNEPVPLE--DEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEG- 190
P+ S+++NE +PL+ D ++ QE + S KRI+K KDFG DFI F VEG
Sbjct: 775 PQQLIHSSNENE-IPLKQIDNNDESCQELRRS-------KRIKKVKDFGPDFIMFLVEGK 826
Query: 191 ----------------DPQTFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGAR 322
DP TF EA++S+D+ WKEAI DEMDS++ NQTW L+DLP G++
Sbjct: 827 GESICNKIPYCYNTESDPITFEEAVKSQDSAFWKEAINDEMDSIMGNQTWILVDLPPGSK 886
Query: 323 HISCKWIFKKKLRPDGTIEKFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAI 502
I CKWIFKKK++ DGTI+KFKARLVAKGF+Q++ ID+FD YA V RIATIR+LI+ +I
Sbjct: 887 PIGCKWIFKKKMKVDGTIDKFKARLVAKGFTQRQGIDYFDTYAPVARIATIRLLISLTSI 946
Query: 503 NRFIVHQMDVKTTFLNGDLTEEIYMEKPEGLDTPA--NQVCRLLKSLYGLKQA 655
+VHQMDVKT FLNG+L EE+YME+PEG P ++VC+L+KSLYGLKQA
Sbjct: 947 YNLVVHQMDVKTAFLNGELEEEVYMEQPEGFVVPGQEHKVCKLVKSLYGLKQA 999
>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 565
Score = 226 bits (577), Expect = 1e-67
Identities = 113/185 (61%), Positives = 139/185 (75%), Gaps = 3/185 (1%)
Frame = +2
Query: 107 SEDVEPP-PKRIRKQKDFGDDFITFNVEGDPQTFSEAMQSRDALLWKEAIEDEMDSLLQN 283
++D EP KRIRK KDFG +F +F +E DP+T+SEAM+S DA WKEAI DE+DSL N
Sbjct: 340 NKDFEPRISKRIRKAKDFGPEFYSFLLEDDPKTYSEAMRSVDAPFWKEAINDEIDSLKIN 399
Query: 284 QTWELIDLPEGARHISCKWIFKKKLRPDGTIEKFKARLVAKGFSQKEDIDFFDIYASVCR 463
+TW L DLP G + I CKW+F+KKLR DG+I+KFKARLV G+ Q E +DFFD Y+ V +
Sbjct: 400 KTWFLTDLPPGCKSIGCKWVFRKKLRTDGSIDKFKARLVVIGYKQVEGVDFFDTYSPVSK 459
Query: 464 IATIRVLIAWAAINRFIVHQMDVKTTFLNGDLTEEIYMEKPEGLDTPA--NQVCRLLKSL 637
+ TIRVLIA A + +HQMDVKT FLNGDL EEIYM +PEG P N+VC+L+KSL
Sbjct: 460 VTTIRVLIALACVFNLEIHQMDVKTAFLNGDLEEEIYMNQPEGFIEPGMENKVCKLVKSL 519
Query: 638 YGLKQ 652
YGLKQ
Sbjct: 520 YGLKQ 524
>gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA91827.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 527
Score = 225 bits (574), Expect = 1e-67
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 11/219 (5%)
Frame = +2
Query: 32 DLSTSQNEPVPLEDEGIDADQEKQ------ASEDVEPPPKRIRKQ---KDFGDDFITFNV 184
D + N+P + I ++ + + EDV P+R ++Q K FGDDF + V
Sbjct: 23 DTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLV 82
Query: 185 EGDPQTFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRP 364
+ P++ SEA S DA WKEA+ EMDS++ N TWE+ + P G + + CKW+FKKKLRP
Sbjct: 83 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRP 142
Query: 365 DGTIEKFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTF 544
DGTIEK+KARLVAKG++QKE DFFD Y+ V R+ TIRVL++ AA + +VHQMDVKTTF
Sbjct: 143 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTF 202
Query: 545 LNGDLTEEIYMEKPEG--LDTPANQVCRLLKSLYGLKQA 655
LNG+L EEIYM++P+G ++ +VC+LLKSLYGLKQA
Sbjct: 203 LNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQA 241
>emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 233 bits (595), Expect = 2e-67
Identities = 110/194 (56%), Positives = 148/194 (76%), Gaps = 5/194 (2%)
Frame = +2
Query: 89 DQEKQASEDVEPPP---KRIRKQKDFGDDFITFNVEGDPQTFSEAMQSRDALLWKEAIED 259
+ + +E+VE P KR+R +K FG DF+TF +EG+PQTF EA+ S + L+WKEAI+
Sbjct: 559 ENSQDQNEEVEVEPRRSKRVRTEKSFGPDFLTFMLEGEPQTFKEAVNSTEGLMWKEAIKS 618
Query: 260 EMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIEKFKARLVAKGFSQKEDIDFF 439
E+DS+LQN TWEL+DLP G + +S KWIFK+K++ DG+I+K+KARLV KG+ Q E +D+F
Sbjct: 619 EIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDYF 678
Query: 440 DIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDLTEEIYMEKPEGLDTPANQ-- 613
D Y+ V RI +IR+++A AA+ +HQMDVKT FLNGDL EEIYME+PEG P +
Sbjct: 679 DTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQPEGFSAPGQEKK 738
Query: 614 VCRLLKSLYGLKQA 655
VC+L+KSLYGLKQA
Sbjct: 739 VCKLVKSLYGLKQA 752
>gb|PHT46584.1| hypothetical protein CQW23_15742 [Capsicum baccatum]
Length = 463
Score = 222 bits (565), Expect = 7e-67
Identities = 109/192 (56%), Positives = 143/192 (74%), Gaps = 7/192 (3%)
Frame = +2
Query: 101 QASEDV--EPPPKRIRKQK---DFGDDFITFNVEGDPQTFSEAMQSRDALLWKEAIEDEM 265
++SE+V E P+R +Q+ FG DF+TF +E +PQTF E M S D+ W+EA+ E+
Sbjct: 50 ESSENVHNEENPRRSTRQRTSTSFGSDFVTFLLENEPQTFKETMSSSDSSFWREAVNSEI 109
Query: 266 DSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIEKFKARLVAKGFSQKEDIDFFDI 445
DS+L N TWEL+DL G + +S KWIFK+K++ DGTI+K+KA+LV KGF QKE +D+FD
Sbjct: 110 DSILSNHTWELVDLSLGNKPLSSKWIFKRKMKADGTIDKYKAKLVVKGFKQKEGLDYFDT 169
Query: 446 YASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDLTEEIYMEKPEGLDTPA--NQVC 619
Y+ V RI +IR+LIA AA+ +HQMDVKT FLNGDL EEIYME+PEG P N+VC
Sbjct: 170 YSPVTRITSIRMLIALAAVYDLQIHQMDVKTAFLNGDLEEEIYMEQPEGFVVPGKENKVC 229
Query: 620 RLLKSLYGLKQA 655
+L+KSLYGLKQA
Sbjct: 230 KLIKSLYGLKQA 241
>gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 764
Score = 226 bits (576), Expect = 5e-66
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 11/219 (5%)
Frame = +2
Query: 32 DLSTSQNEPVPLEDEGIDADQEKQ------ASEDVEPPPKRIRKQ---KDFGDDFITFNV 184
D + N+P + I ++ + + EDV P+R ++Q K FGDDF + V
Sbjct: 152 DTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLV 211
Query: 185 EGDPQTFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRP 364
+ P++ SEA SRDA WKEA+ EMDS++ N TWE+ + P G + + CKW+FKKKLRP
Sbjct: 212 DDTPKSISEAYASRDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRP 271
Query: 365 DGTIEKFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTF 544
DGTIEK+KARLVAKG++QKE DFFD Y+ V R+ TIRVL++ AA + +VHQMDVKT F
Sbjct: 272 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 331
Query: 545 LNGDLTEEIYMEKPEG--LDTPANQVCRLLKSLYGLKQA 655
LNG+L EEIYM++P+G ++ +VC+LLKSLYGLKQA
Sbjct: 332 LNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQA 370
>gb|AAM94928.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 619
Score = 223 bits (568), Expect = 7e-66
Identities = 111/202 (54%), Positives = 143/202 (70%), Gaps = 2/202 (0%)
Frame = +2
Query: 56 PVPLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQTFSEAMQSRDAL 235
P+ D+ + + E+ D KR R K FGDD+I + V+ P+T EA S DA
Sbjct: 279 PIEHNDQTPEENPEEDNIVDTRKS-KRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDAD 337
Query: 236 LWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIEKFKARLVAKGFS 415
WKEA+ EMDS++ N TWE+++ P G + + CKW+FKKKLRPDGTIEK+KARLVAKG++
Sbjct: 338 YWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYT 397
Query: 416 QKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDLTEEIYMEKPEG- 592
QKE DFFD Y+ V R+ TIRVL+A AA + +VHQMDVKT FLNG+L EEIYM++P+G
Sbjct: 398 QKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGY 457
Query: 593 -LDTPANQVCRLLKSLYGLKQA 655
L+ VC+LLKSLYGLKQA
Sbjct: 458 VLEGQEGMVCKLLKSLYGLKQA 479
>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 229 bits (584), Expect = 1e-65
Identities = 121/226 (53%), Positives = 153/226 (67%), Gaps = 10/226 (4%)
Frame = +2
Query: 8 LKDAPENTDLSTSQNEPVPLED-----EGIDADQEKQASED---VEPPPKRIRKQKDFGD 163
+K+AP STS EP+ + E ID E+ ED KR R K FGD
Sbjct: 691 MKNAP-----STSSQEPILSPEHFVPIEHIDQTLEENPEEDNIVATRKSKRQRTAKSFGD 745
Query: 164 DFITFNVEGDPQTFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWI 343
D+I + V+ P+T EA S DA WKEA+ EMDS++ N TWE+++ P G + + CKW+
Sbjct: 746 DYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWV 805
Query: 344 FKKKLRPDGTIEKFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQ 523
FKKKLRPDGTIEK+KARLVAKG++QKE DFFD Y+ V R+ TIRVL+A AA + +VHQ
Sbjct: 806 FKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQ 865
Query: 524 MDVKTTFLNGDLTEEIYMEKPEG--LDTPANQVCRLLKSLYGLKQA 655
MDVKT FLNG+L EEIYM++P+G L+ VC+LLKSLYGLKQA
Sbjct: 866 MDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQA 911
>dbj|GAU11010.1| hypothetical protein TSUD_113030 [Trifolium subterraneum]
Length = 617
Score = 222 bits (566), Expect = 1e-65
Identities = 115/214 (53%), Positives = 147/214 (68%), Gaps = 3/214 (1%)
Frame = +2
Query: 23 ENTDLSTSQNEPV-PLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQ 199
E ++ S + PV P D + + E + S KR+R KD+G D+ + + DP
Sbjct: 255 EQDNIPESSHVPVIPNADGNDEVETELRRS-------KRVRVAKDYGPDYAAYTLNEDPA 307
Query: 200 TFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIE 379
EA+ S DA LW+EAI DEMDSL N+TW L+DLP G + I CKWI KKKL+PDGT+E
Sbjct: 308 NLQEALSSMDANLWQEAINDEMDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVE 367
Query: 380 KFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDL 559
K+KARL+AKGF Q+E+IDFFD ++ V RI +IRVLI+ AA+ IV+QMDV T FLNGDL
Sbjct: 368 KYKARLIAKGFRQRENIDFFDTFSPVTRITSIRVLISIAALYNLIVYQMDVNTAFLNGDL 427
Query: 560 TEEIYMEKPEG--LDTPANQVCRLLKSLYGLKQA 655
EEIYME+PEG + +VC+L KSLYGLKQA
Sbjct: 428 EEEIYMEQPEGFVIHGQETKVCKLDKSLYGLKQA 461
>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays]
gb|ACA21850.1| Fourf gag/pol protein [Zea mays]
Length = 1279
Score = 228 bits (582), Expect = 2e-65
Identities = 121/219 (55%), Positives = 147/219 (67%), Gaps = 5/219 (2%)
Frame = +2
Query: 14 DAPENTDLSTSQNEPVPL---EDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNV 184
D T +S +P+ ED + +E V KR R K FG+DFI + V
Sbjct: 706 DTSHETIISHEHELSIPIDHAEDSHVHIPEEDDTI--VTRKSKRQRVAKSFGNDFIVYLV 763
Query: 185 EGDPQTFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRP 364
E P T SEA S DA LWKEA+ EM+S++ N TWE++D P G + I CKWIFKKKLRP
Sbjct: 764 EDTPTTISEAYSSPDADLWKEAVRSEMESIMSNGTWEVVDRPYGCQPIGCKWIFKKKLRP 823
Query: 365 DGTIEKFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTF 544
DGTIE++KARLVAKG++QKE DFFD Y+ V R+ TIR LIA AA I+HQMDVKT F
Sbjct: 824 DGTIERYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRTLIAVAASYGLIIHQMDVKTAF 883
Query: 545 LNGDLTEEIYMEKPEGL--DTPANQVCRLLKSLYGLKQA 655
LNG+L EEIYM++PEG D N+VCRL+KSLYGLKQA
Sbjct: 884 LNGELDEEIYMDQPEGFIADGQENKVCRLIKSLYGLKQA 922
>gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 713
Score = 223 bits (569), Expect = 3e-65
Identities = 112/219 (51%), Positives = 151/219 (68%), Gaps = 11/219 (5%)
Frame = +2
Query: 32 DLSTSQNEPVPLEDEGIDADQEKQ------ASEDVEPPPKRIRKQ---KDFGDDFITFNV 184
D + N+P + I ++ + + EDV P+R ++Q K FGDDF + V
Sbjct: 121 DTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLV 180
Query: 185 EGDPQTFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRP 364
+ P++ SEA S DA WKEA+ EMDS++ N TWE+ + P G + + CKW+FKKKLRP
Sbjct: 181 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRP 240
Query: 365 DGTIEKFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTF 544
DGTIEK+KARLVAKG++QKE DFFD Y+ V R+ TIRVL++ AA + +VHQMDVKT F
Sbjct: 241 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 300
Query: 545 LNGDLTEEIYMEKPEG--LDTPANQVCRLLKSLYGLKQA 655
LNG+L EEIYM++P+G ++ +VC+LLKSLYGLKQA
Sbjct: 301 LNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQA 339
>dbj|GAU47690.1| hypothetical protein TSUD_245810 [Trifolium subterraneum]
Length = 1332
Score = 228 bits (580), Expect = 4e-65
Identities = 119/214 (55%), Positives = 147/214 (68%), Gaps = 3/214 (1%)
Frame = +2
Query: 23 ENTDLSTSQNEPV-PLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQ 199
E + S + PV P D + + E + S KR+R KD+G D+ TF + DP
Sbjct: 561 EQDKIPESSHVPVIPNADSNDEVETELRRS-------KRVRVAKDYGPDYATFTLNEDPA 613
Query: 200 TFSEAMQSRDALLWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIE 379
EA+ S DA LW+EAI DEMDSL N+TW L+DLP G + I CKWI KKKL+PDGT+E
Sbjct: 614 NLQEALSSMDADLWQEAINDEMDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVE 673
Query: 380 KFKARLVAKGFSQKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDL 559
K+KARLVAKGF Q+E+IDFFD ++ V RI +IRVLI+ A+ IVHQMDVKT FLNGDL
Sbjct: 674 KYKARLVAKGFRQRENIDFFDTFSPVTRITSIRVLISIPALYNLIVHQMDVKTAFLNGDL 733
Query: 560 TEEIYMEKPEG--LDTPANQVCRLLKSLYGLKQA 655
EEIYME+PEG + +VC+L KSLYGLKQA
Sbjct: 734 EEEIYMEQPEGFVIHGQETKVCKLDKSLYGLKQA 767
>gb|AAM00978.1|AC090482_7 Putative retrovirus-related pol polyprotein from transposon Tnt
1-94 [Oryza sativa Japonica Group]
gb|AAP53107.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 536
Score = 219 bits (558), Expect = 4e-65
Identities = 110/202 (54%), Positives = 142/202 (70%), Gaps = 2/202 (0%)
Frame = +2
Query: 56 PVPLEDEGIDADQEKQASEDVEPPPKRIRKQKDFGDDFITFNVEGDPQTFSEAMQSRDAL 235
P+ D+ + + E+ D KR R K FGDD+I + V+ P+T EA S DA
Sbjct: 8 PIEHNDQTPEENPEEDNIVDTRKS-KRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDAD 66
Query: 236 LWKEAIEDEMDSLLQNQTWELIDLPEGARHISCKWIFKKKLRPDGTIEKFKARLVAKGFS 415
WKEA+ EMDS++ N TWE+++ P G + + CKW+FKKKLRPDGTIEK+KARLVAKG++
Sbjct: 67 YWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYT 126
Query: 416 QKEDIDFFDIYASVCRIATIRVLIAWAAINRFIVHQMDVKTTFLNGDLTEEIYMEKPEG- 592
QKE DFFD Y+ V R+ TIRVL+A AA + +VHQMDVKT FLNG+L EEI M++P+G
Sbjct: 127 QKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEICMDQPDGY 186
Query: 593 -LDTPANQVCRLLKSLYGLKQA 655
L+ VC+LLKSLYGLKQA
Sbjct: 187 VLEGQDGMVCKLLKSLYGLKQA 208