BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00028513
         (478 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85253.1| putative retrotransposon protein, partial [Phyllo...    55   5e-07

>gb|ADB85253.1| putative retrotransposon protein, partial [Phyllostachys edulis]
          Length = 861

 Score = 55.1 bits (131), Expect(2) = 5e-07
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +3

Query: 201 WLRPLGHFSIQCPRYLSNSSALG---ISLLNF*IHLLVARWQNTRVYHFPQVIIYPFEII 371
           W   LGH    C   L     LG   +    F     + +W     +    +   PF+++
Sbjct: 392 WHHRLGHLCGSCLSSLVRQGVLGRVPVDTSMFCQGCKLGKWLQLPYHSSESLSSRPFDLV 451

Query: 372 HSDV*DPSPHISSGVVGT-VIFVDDYSRYTWIYLLS 476
           HSDV  P+P IS G   + VIF+DDYSR+TWI+ +S
Sbjct: 452 HSDVWGPAPIISKGGHKSYVIFIDDYSRFTWIFPIS 487



 Score = 26.2 bits (56), Expect(2) = 5e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 68  DLHIGMQIGI---RRMKDGLYFVDKLPLPCPTVA 160
           D   G  +G    RR + GLY +D+L LP  +VA
Sbjct: 339 DRQTGTSLGTGRRRRDRQGLYILDRLHLPSASVA 372