BLASTX nr result
ID: Ophiopogon26_contig00028230
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00028230
(2244 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 38 4e-13
gb|PKA51732.1| Retrovirus-related Pol polyprotein from transposo... 50 3e-08
emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera] 37 5e-08
gb|PHT58324.1| hypothetical protein CQW23_00687 [Capsicum baccatum] 37 1e-07
ref|XP_012856116.1| PREDICTED: uncharacterized protein LOC105975... 36 4e-06
emb|CAX68205.1| retrotransposon ribonuclease H, partial [Heliant... 47 5e-06
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 38.1 bits (87), Expect(4) = 4e-13
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 19/177 (10%)
Frame = +2
Query: 764 NEYGKCVYS*IKKYEVIIISFI*CR*YVN----FS***KYSIGNYYILSSWYDTKDTGEP 931
N+ KCVYS + E +II YV+ F L S ++ KD GE
Sbjct: 944 NDADKCVYSRSENGEYVIICL-----YVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMGEA 998
Query: 932 NVTFAIKINRTP*SQFH*HGLNILRNC*RNSNRTVKM------------CLGSGKLKKNE 1075
+V +KI R G +IL + + + + +K + KLKKN
Sbjct: 999 SVILGVKIIR--------KGDSILLSQEKYTEKLLKKFGYYDFKSVSTPYDANSKLKKNR 1050
Query: 1076 -RCMSQLKSSQITGNLMCAIHI-RLDTAFAVGILIKINY-PDQVHWNDVSNY*NILR 1237
+SQ + +QI G+L+ + R D A+AVG L + P Q HW ++ LR
Sbjct: 1051 GESISQTQYAQIIGSLLHLMSFSRPDIAYAVGRLSRCTQCPSQDHWEALARLMKYLR 1107
Score = 36.2 bits (82), Expect(4) = 4e-13
Identities = 25/85 (29%), Positives = 43/85 (50%)
Frame = +1
Query: 1216 KLLKHP*RIIIMLLSYKNFHVVLEKYTNSNQIIVSNETRSTSGWILP*ATQFLGVQISKK 1395
+L+K+ + + Y F VLE Y+++N I S+ET+STSG++ + + S +
Sbjct: 1101 RLMKYLRGTMDYAIEYSGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAVTWR-SAR 1159
Query: 1396 QILILHSKVEFASFAMTTIVKEV*W 1470
Q +I S +E A+ E W
Sbjct: 1160 QTIIARSTMESEFVALEMAGSEAEW 1184
Score = 35.0 bits (79), Expect(4) = 4e-13
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 649 EREMHCQELLVNLYAPR*APKHWHEKLDQMVFVE*F 756
++E C+ LL +LY + APK WHEKLD ++ E F
Sbjct: 907 QKEKVCK-LLKSLYGLKQAPKQWHEKLDNVLLCEGF 941
Score = 35.0 bits (79), Expect(4) = 4e-13
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +3
Query: 1560 SKVYNGKSRHIKIKYSHVSEQSNKAVVTIIYVKSK 1664
+K YNGK+RHI+++++ V + ++I YVKS+
Sbjct: 1217 NKSYNGKNRHIQLRHNLVKQLLKSGTISIDYVKSE 1251
>gb|PKA51732.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 311
Score = 50.1 bits (118), Expect(2) = 3e-08
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +1
Query: 1237 RIIIMLLSYKNFHVVLEKYTNSNQIIVSNETRSTSGWILP*ATQFLGVQISKKQILILHS 1416
+I+ L Y ++ VLE Y++++ I +NE +STSGWI + + SKKQ I HS
Sbjct: 142 KIMYFKLHYNDYPAVLEGYSDASWITNANENKSTSGWIFTLGGGAIS-RASKKQTCISHS 200
Query: 1417 KVEFASFAMTTIVKEV*W 1470
+EF +++ KE W
Sbjct: 201 TMEFEFISLSAASKEEEW 218
Score = 39.3 bits (90), Expect(2) = 3e-08
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +3
Query: 1560 SKVYNGKSRHIKIKYSHVSEQSNKAVVTIIYVKS 1661
+ VYNGKSRHI ++++++ + ++TI+YVKS
Sbjct: 251 NNVYNGKSRHISLRHAYIRKLIKYDIITIMYVKS 284
>emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]
Length = 1096
Score = 37.4 bits (85), Expect(4) = 5e-08
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Frame = +2
Query: 893 LSSWYDTKDTGEPNVTFAIKINRTP----*SQFH*HGLNILRNC*RNSNRTVKMCLG-SG 1057
L S +D KD GE V IKI RTP SQ H + ILR + V +
Sbjct: 805 LGSKFDMKDLGEAEVILGIKITRTPNGLKLSQEH-YVEKILRKFEHFDCKPVSTPYDPNS 863
Query: 1058 KLKKN-ERCMSQLKSSQITGNLMCAI-HIRLDTAFA 1159
+LKKN E ++Q++ +QI G+LM + + R D A+A
Sbjct: 864 QLKKNREHSVAQIEYAQIIGSLMYLMNYTRPDIAYA 899
Score = 34.3 bits (77), Expect(4) = 5e-08
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +1
Query: 1255 LSYKNFHVVLEKYTNSNQIIVSNETRSTSGWILP*ATQFLGVQISKKQILILHSKVEFAS 1434
L + F VLE ++++N I+ S+E +STSG++ + + S KQ I S +E
Sbjct: 920 LCFSGFPSVLEGFSDANWILDSDEMKSTSGYVFILGGSAVSWK-SAKQTCITQSIMEAKF 978
Query: 1435 FAMTTIVKEV*W 1470
A+ EV W
Sbjct: 979 IALENASSEVEW 990
Score = 33.1 bits (74), Expect(4) = 5e-08
Identities = 13/35 (37%), Positives = 26/35 (74%)
Frame = +3
Query: 1560 SKVYNGKSRHIKIKYSHVSEQSNKAVVTIIYVKSK 1664
SK++NGK+RHI ++++ V + V+++ +V+SK
Sbjct: 1023 SKIFNGKNRHICLRHNIVWQLLETGVISLEFVRSK 1057
Score = 21.6 bits (44), Expect(4) = 5e-08
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 834 VDNMLIFRSDENIVSETTIF 893
+D+MLIF ++ +V ET F
Sbjct: 785 IDDMLIFGTNLEVVCETKKF 804
>gb|PHT58324.1| hypothetical protein CQW23_00687 [Capsicum baccatum]
Length = 573
Score = 36.6 bits (83), Expect(3) = 1e-07
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Frame = +2
Query: 722 KNWIKWF----LLNDLRINEYGKCVY-S*IKKYEVIIISFI*CR*YVNFS***KYSI--- 877
K W + F L N +INE KCVY + ++VI+ + +N I
Sbjct: 63 KQWHEKFDQTMLANGFKINECDKCVYIKDTQNHQVIVCLYADDMLVIN------RDICDI 116
Query: 878 -GNYYILSSWYDTKDTGEPNVTFAIKINRTP*SQFH*HGLNILRN--C*RNSNRTVKMCL 1048
I S +D KD G +V I+I+RTP GL +L++ + ++ M
Sbjct: 117 NATKRIFESKFDMKDLGVADVILGIRIHRTP------QGLALLQSHYIEKVLDKFKDMQF 170
Query: 1049 GSGK--------LKKNE-RCMSQLKSSQITGNLMCAIH-IRLDTAFAVGILI-KINYPDQ 1195
G K L+KNE SQL+ +++ G LM ++ R D A A+ L + P++
Sbjct: 171 GIAKTPLDVNFALRKNEGESDSQLEYARVLGCLMYIMNSTRSDIACAISKLSWYTSNPNK 230
Query: 1196 VHW 1204
HW
Sbjct: 231 THW 233
Score = 36.6 bits (83), Expect(3) = 1e-07
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +1
Query: 1255 LSYKNFHVVLEKYTNSNQIIVSNETRSTSGWILP*ATQFLGVQISKKQILILHSKVEFAS 1434
L Y + VLE Y+++N I SNE +STSG++ + + S KQ I S +E
Sbjct: 251 LHYNKYPAVLEGYSDANWITGSNEVKSTSGYVFTIGGGAVSWK-SSKQTCITRSTIESEF 309
Query: 1435 FAMTTIVKEV*W 1470
+ +E W
Sbjct: 310 ITLDKADEEAEW 321
Score = 33.1 bits (74), Expect(3) = 1e-07
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 1560 SKVYNGKSRHIKIKYSHVSEQSNKAVVTIIYVKSKE 1667
S +YN KS HI+ +++ V + + ++T YVKSK+
Sbjct: 354 SMMYNSKSLHIRRRHNTVKKLLSSGIITTDYVKSKD 389
>ref|XP_012856116.1| PREDICTED: uncharacterized protein LOC105975464 [Erythranthe guttata]
Length = 1203
Score = 36.2 bits (82), Expect(3) = 4e-06
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 1560 SKVYNGKSRHIKIKYSHVSEQSNKAVVTIIYVKSKE 1667
S +YNGKSRHI+ +++ + + + +++I YVK K+
Sbjct: 517 SSMYNGKSRHIRRRHNTIRQLISNGIISIDYVKFKD 552
Score = 33.1 bits (74), Expect(3) = 4e-06
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Frame = +2
Query: 722 KNWIKWF----LLNDLRINEYGKCVYS*IKKYEVIIISFI*CR*YVNFS***KYSIGNYY 889
K W + F L N +INE KCVY E ++I + S + +
Sbjct: 226 KQWHEKFDRTILANGFKINECDKCVYIKNTPNEFVLICLSVDDMLIMGSNH-EIIVKTKK 284
Query: 890 ILSSWYDTKDTGEPNVTFAIKI----NRTP*SQFH*HGLNILRNC*RNSN--RTVKMCLG 1051
+LS+ +D KD G +V +KI N +Q H + +LR + T+ + L
Sbjct: 285 MLSTHFDMKDMGLADVILGVKIIKNENGLVFTQSH-YIEKVLRKFKMFDSPPATIPIDLK 343
Query: 1052 SGKLKKNERCMSQLKSSQITGNLMCAIH-IRLDTAFAVGILIKI-NYPDQVHWN 1207
K + QLK SQI G+LM ++ R D A +V L + + P HWN
Sbjct: 344 IHLAKNCGEPVDQLKYSQIIGSLMYVMNCTRPDIAHSVSKLSRFTSNPRNDHWN 397
Score = 31.6 bits (70), Expect(3) = 4e-06
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 1255 LSYKNFHVVLEKYTNSNQIIVSNETRSTSGWILP*ATQFLGVQISKKQILILHSKVEFAS 1434
L Y + VLE Y+++N I + + +STSG++ + + S KQ I S +E
Sbjct: 414 LHYTRYPSVLEGYSDANWISDTKDYKSTSGYVFTIGGAAVSWK-STKQTCIARSTMESEF 472
Query: 1435 FAMTTIVKEV*W 1470
A+ I E W
Sbjct: 473 IALDKIGAEAEW 484
>emb|CAX68205.1| retrotransposon ribonuclease H, partial [Helianthus annuus]
Length = 207
Score = 46.6 bits (109), Expect(2) = 5e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Frame = +1
Query: 1255 LSYKNFHVVLEKYTNSNQIIVSNETRSTSGWILP*ATQFLGVQISKKQILILHSKVEFAS 1434
L+Y +F +LE Y++++ I +N+++STSGWI A + SKKQ I HS +E
Sbjct: 53 LTYTSFSRILEGYSDASWIDRTNDSKSTSGWIFTLAGGAVS-WASKKQTCIAHSTMEAEL 111
Query: 1435 FAMTTIVKEV*WQTD 1479
A+ KE W D
Sbjct: 112 IALAAAGKEAEWIRD 126
Score = 35.0 bits (79), Expect(2) = 5e-06
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 1548 SHMLSKVYNGKSRHIKIKYSHVSEQSNKAVVTIIYVKSKE 1667
S + + VYNG SRHI +++++V + + ++YVK+ +
Sbjct: 152 SKVYNAVYNGGSRHIGLRHNYVRQLLESGTIKVVYVKTSK 191