BLASTX nr result

ID: Ophiopogon26_contig00027921 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00027921
         (793 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010059808.1| PREDICTED: F-box protein At3g12350 [Eucalypt...    60   2e-06
ref|XP_020242312.1| F-box protein At3g12350 [Asparagus officinal...    57   1e-05

>ref|XP_010059808.1| PREDICTED: F-box protein At3g12350 [Eucalyptus grandis]
 gb|KCW66255.1| hypothetical protein EUGRSUZ_F00088 [Eucalyptus grandis]
          Length = 454

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 25/40 (62%), Positives = 29/40 (72%)
 Frame = +3

Query: 3   RRWDPEHFVSIESCCPSPARPLQGLWKVIGTSTPMEICYV 122
           RRW+PEHFV I  C P+P+RPLQGLWK IG  T +E   V
Sbjct: 279 RRWEPEHFVKIVDCSPTPSRPLQGLWKGIGDCTKLEFYLV 318


>ref|XP_020242312.1| F-box protein At3g12350 [Asparagus officinalis]
 gb|ONK59805.1| uncharacterized protein A4U43_C08F10890 [Asparagus officinalis]
          Length = 262

 Score = 56.6 bits (135), Expect = 1e-05
 Identities = 25/40 (62%), Positives = 29/40 (72%)
 Frame = +3

Query: 3   RRWDPEHFVSIESCCPSPARPLQGLWKVIGTSTPMEICYV 122
           +RWD EHFV IE+CCPS ARPLQGLWK I  S  ++   V
Sbjct: 84  KRWDAEHFVKIENCCPSLARPLQGLWKGICESMYLDFYLV 123


Top