BLASTX nr result
ID: Ophiopogon26_contig00026440
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00026440
(366 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020271246.1| cleavage and polyadenylation specificity fac... 83 4e-16
ref|XP_008789275.1| PREDICTED: cleavage and polyadenylation spec... 69 3e-11
gb|OAY25311.1| hypothetical protein MANES_17G084000 [Manihot esc... 69 3e-11
ref|XP_021600005.1| cleavage and polyadenylation specificity fac... 69 3e-11
gb|OAY25310.1| hypothetical protein MANES_17G084000 [Manihot esc... 68 8e-11
ref|XP_019708795.1| PREDICTED: uncharacterized protein LOC105053... 68 8e-11
ref|XP_015895381.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 68 1e-10
gb|PKA52369.1| Cleavage and polyadenylation specificity factor s... 67 2e-10
gb|KDO60762.1| hypothetical protein CISIN_1g043917mg, partial [C... 66 3e-10
dbj|GAY56531.1| hypothetical protein CUMW_172610 [Citrus unshiu] 66 4e-10
gb|ESR61399.1| hypothetical protein CICLE_v10014563mg [Citrus cl... 66 4e-10
ref|XP_009391419.1| PREDICTED: cleavage and polyadenylation spec... 66 4e-10
ref|XP_006448159.2| cleavage and polyadenylation specificity fac... 66 4e-10
ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation spec... 66 4e-10
gb|OMO60684.1| hypothetical protein CCACVL1_23958 [Corchorus cap... 65 6e-10
gb|EXC54202.1| hypothetical protein L484_001390 [Morus notabilis] 64 1e-09
ref|XP_010107067.2| cleavage and polyadenylation specificity fac... 64 2e-09
ref|XP_021821066.1| cleavage and polyadenylation specificity fac... 64 2e-09
ref|XP_021665112.1| cleavage and polyadenylation specificity fac... 64 3e-09
ref|XP_015578956.1| PREDICTED: cleavage and polyadenylation spec... 63 6e-09
>ref|XP_020271246.1| cleavage and polyadenylation specificity factor subunit 3-II
[Asparagus officinalis]
ref|XP_020271247.1| cleavage and polyadenylation specificity factor subunit 3-II
[Asparagus officinalis]
Length = 532
Score = 83.2 bits (204), Expect = 4e-16
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +3
Query: 3 SESSIRDAWKSSRDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKL 149
SESSI WKSSRDE VAEAILVMEKTQ+AK+MCEDELLK GEKEHKL
Sbjct: 480 SESSITAMWKSSRDEMVAEAILVMEKTQSAKVMCEDELLKTFGEKEHKL 528
>ref|XP_008789275.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Phoenix dactylifera]
Length = 564
Score = 69.3 bits (168), Expect = 3e-11
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 SESSIRDAWKSS--RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVK 176
S SS D+ S+ R+EKV E ILVMEKT+TAKI+CEDE L+ L +EHK+ Y CP +
Sbjct: 480 SYSSFGDSEASNLVRNEKVVEGILVMEKTKTAKIVCEDEFLQTLHVEEHKVQFEYSCPAE 539
Query: 177 VNSREQLSHKGSYEISPSIGN 239
REQ+S + + PS GN
Sbjct: 540 -KCREQVSCQSNSGPPPSDGN 559
>gb|OAY25311.1| hypothetical protein MANES_17G084000 [Manihot esculenta]
gb|OAY25312.1| hypothetical protein MANES_17G084000 [Manihot esculenta]
Length = 662
Score = 69.3 bits (168), Expect = 3e-11
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +3
Query: 6 ESSIRDAWKSSRDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNS 185
+ + R +W DE+V E ILVMEK++ A+++ +DELL LGEK+H++ AYCCPV V++
Sbjct: 485 DGTSRTSWLQVTDERVTEGILVMEKSKKARVVHQDELLLMLGEKQHEVQMAYCCPVHVDN 544
Query: 186 REQ--LSHKGSYEI 221
++ + H ++++
Sbjct: 545 LDEARMIHSSAHDV 558
>ref|XP_021600005.1| cleavage and polyadenylation specificity factor subunit 3-II
[Manihot esculenta]
Length = 954
Score = 69.3 bits (168), Expect = 3e-11
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +3
Query: 6 ESSIRDAWKSSRDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNS 185
+ + R +W DE+V E ILVMEK++ A+++ +DELL LGEK+H++ AYCCPV V++
Sbjct: 485 DGTSRTSWLQVTDERVTEGILVMEKSKKARVVHQDELLLMLGEKQHEVQMAYCCPVHVDN 544
Query: 186 REQ--LSHKGSYEI 221
++ + H ++++
Sbjct: 545 LDEARMIHSSAHDV 558
>gb|OAY25310.1| hypothetical protein MANES_17G084000 [Manihot esculenta]
Length = 901
Score = 68.2 bits (165), Expect = 8e-11
Identities = 29/63 (46%), Positives = 46/63 (73%)
Frame = +3
Query: 6 ESSIRDAWKSSRDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNS 185
+ + R +W DE+V E ILVMEK++ A+++ +DELL LGEK+H++ AYCCPV V++
Sbjct: 485 DGTSRTSWLQVTDERVTEGILVMEKSKKARVVHQDELLLMLGEKQHEVQMAYCCPVHVDN 544
Query: 186 REQ 194
++
Sbjct: 545 LDE 547
>ref|XP_019708795.1| PREDICTED: uncharacterized protein LOC105053331 [Elaeis guineensis]
Length = 1173
Score = 68.2 bits (165), Expect = 8e-11
Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 SESSIRDAWKSS--RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVK 176
S+ S D+ S+ R+EKVAE ILVMEK +TAKI+CEDE L+ L KEH + Y P++
Sbjct: 480 SDFSFGDSGASNLVRNEKVAEGILVMEKNKTAKILCEDEFLQTLHVKEHNVQFQYSRPLE 539
Query: 177 VNSREQLSHKGSYEISPSIGNS 242
V REQ+S + S + PS G+S
Sbjct: 540 V-CREQVSCQSSSGLLPSNGSS 560
>ref|XP_015895381.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II [Ziziphus jujuba]
Length = 665
Score = 67.8 bits (164), Expect = 1e-10
Identities = 33/63 (52%), Positives = 46/63 (73%)
Frame = +3
Query: 42 DEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLSHKGSYEI 221
DE+VAE ILVMEK++ A ++ ++ELL LGEKEHK+ AYCCPV + S E+ S +I
Sbjct: 503 DERVAEGILVMEKSKKANVVHQEELLLMLGEKEHKVQFAYCCPVSIGSLEETK---STDI 559
Query: 222 SPS 230
+P+
Sbjct: 560 TPT 562
>gb|PKA52369.1| Cleavage and polyadenylation specificity factor subunit 3-II
[Apostasia shenzhenica]
Length = 540
Score = 67.0 bits (162), Expect = 2e-10
Identities = 39/109 (35%), Positives = 60/109 (55%)
Frame = +3
Query: 39 RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLSHKGSYE 218
R+E+ AE ILVMEK +TAKI+ +++LL+ L KEH ++ AYCCP+KVN S K S +
Sbjct: 373 RNERSAEGILVMEKNKTAKIVAKNDLLRMLDAKEHDVLQAYCCPIKVNRSLCSSEKVSLD 432
Query: 219 ISPSIGNSLDVNNVAASSDCXXXXXXXXXXRQEIDCSHIRSTSDQFQLN 365
S S S D+ + S +ID +I ++ +++
Sbjct: 433 KSKS--ESSDMKDKLVSHRSSLLDLVLMGLESDIDGRYINKACERLEVD 479
>gb|KDO60762.1| hypothetical protein CISIN_1g043917mg, partial [Citrus sinensis]
Length = 423
Score = 66.2 bits (160), Expect = 3e-10
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +3
Query: 39 RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLS 200
+DE+VAE ILV+EK++ AK++ +DELL LGEK H++ AYCCPV V+ E+ +
Sbjct: 268 KDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFT 321
>dbj|GAY56531.1| hypothetical protein CUMW_172610 [Citrus unshiu]
Length = 646
Score = 66.2 bits (160), Expect = 4e-10
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +3
Query: 39 RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLS 200
+DE+VAE ILV+EK++ AK++ +DELL LGEK H++ AYCCPV V+ E+ +
Sbjct: 491 KDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFT 544
>gb|ESR61399.1| hypothetical protein CICLE_v10014563mg [Citrus clementina]
Length = 646
Score = 66.2 bits (160), Expect = 4e-10
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +3
Query: 39 RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLS 200
+DE+VAE ILV+EK++ AK++ +DELL LGEK H++ AYCCPV V+ E+ +
Sbjct: 491 KDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFT 544
>ref|XP_009391419.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Musa acuminata subsp. malaccensis]
Length = 663
Score = 66.2 bits (160), Expect = 4e-10
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Frame = +3
Query: 3 SESSIRDAWKSSRDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVN 182
S S + K +R++ AE IL+MEKT+TAK++ E ELL+ LG EH++ A+CCPV+V
Sbjct: 482 SSSKDNEIIKLAREDTTAEGILLMEKTKTAKLIHESELLRTLGVIEHQVRFAFCCPVEVT 541
Query: 183 SREQLSHKGS----YEIS---PSIGNSLDVNNVAASSDCXXXXXXXXXXRQEIDCSHIRS 341
E LS + + +E S + L + A+++ +C I+
Sbjct: 542 RTEHLSDEANTTHCHESSITRVDVPRCLATEDRLATANNTLLHILLSELETRTECKDIQI 601
Query: 342 TSDQFQLN 365
SD QL+
Sbjct: 602 ASDSLQLH 609
>ref|XP_006448159.2| cleavage and polyadenylation specificity factor subunit 3-II
[Citrus clementina]
Length = 1017
Score = 66.2 bits (160), Expect = 4e-10
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +3
Query: 39 RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLS 200
+DE+VAE ILV+EK++ AK++ +DELL LGEK H++ AYCCPV V+ E+ +
Sbjct: 491 KDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFT 544
>ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Citrus sinensis]
Length = 1019
Score = 66.2 bits (160), Expect = 4e-10
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +3
Query: 39 RDEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLS 200
+DE+VAE ILV+EK++ AK++ +DELL LGEK H++ AYCCPV V+ E+ +
Sbjct: 491 KDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELEKFT 544
>gb|OMO60684.1| hypothetical protein CCACVL1_23958 [Corchorus capsularis]
Length = 243
Score = 64.7 bits (156), Expect = 6e-10
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +3
Query: 42 DEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQ 194
DE+V E ILV+EK + AK+M +DELL LGEK+H++ CAYCCP+ + E+
Sbjct: 99 DERVTEGILVVEKGKKAKVMHQDELLLKLGEKKHEVQCAYCCPMHTETLEK 149
>gb|EXC54202.1| hypothetical protein L484_001390 [Morus notabilis]
Length = 244
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/54 (53%), Positives = 38/54 (70%)
Frame = +3
Query: 42 DEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLSH 203
DE+VAE I VMEK + AK++ +DELL LGEK+H + AYCCP+ V + E H
Sbjct: 78 DERVAEGIFVMEKGKKAKVVHQDELLLMLGEKQHIVQHAYCCPIHVKNSESADH 131
>ref|XP_010107067.2| cleavage and polyadenylation specificity factor subunit 3-II [Morus
notabilis]
Length = 292
Score = 63.9 bits (154), Expect = 2e-09
Identities = 29/54 (53%), Positives = 38/54 (70%)
Frame = +3
Query: 42 DEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLSH 203
DE+VAE I VMEK + AK++ +DELL LGEK+H + AYCCP+ V + E H
Sbjct: 126 DERVAEGIFVMEKGKKAKVVHQDELLLMLGEKQHIVQHAYCCPIHVKNSESADH 179
>ref|XP_021821066.1| cleavage and polyadenylation specificity factor subunit 3-II
[Prunus avium]
Length = 966
Score = 64.3 bits (155), Expect = 2e-09
Identities = 32/76 (42%), Positives = 51/76 (67%)
Frame = +3
Query: 42 DEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQLSHKGSYEI 221
DE+VAE +LVME+ + AK++ +DELL LGEK+H++ AYCCPV + + + + +
Sbjct: 500 DERVAEGVLVMERNKKAKVVHQDELLLMLGEKKHQVQFAYCCPVDIGNSGETKSSTTNDE 559
Query: 222 SPSIGNSLDVNNVAAS 269
S ++ SL N+V+ S
Sbjct: 560 SSTL--SLSHNHVSIS 573
>ref|XP_021665112.1| cleavage and polyadenylation specificity factor subunit 3-II [Hevea
brasiliensis]
Length = 1058
Score = 63.5 bits (153), Expect = 3e-09
Identities = 27/51 (52%), Positives = 42/51 (82%)
Frame = +3
Query: 42 DEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQ 194
DE+VAE ILVMEK++ A+++ ++ELL LGEK+H++ AYCCPV V++ ++
Sbjct: 497 DERVAEGILVMEKSKKARVVHQEELLLMLGEKQHEVQVAYCCPVHVDNLDE 547
>ref|XP_015578956.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Ricinus communis]
Length = 656
Score = 62.8 bits (151), Expect = 6e-09
Identities = 27/51 (52%), Positives = 41/51 (80%)
Frame = +3
Query: 42 DEKVAEAILVMEKTQTAKIMCEDELLKALGEKEHKLMCAYCCPVKVNSREQ 194
DE+VAE ILV+EK + A+++ +DELL LG K+H++ AYCCPV+V++ +Q
Sbjct: 497 DERVAEGILVVEKNKKARVVHQDELLLMLGAKQHEVQFAYCCPVQVDNMDQ 547