BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00022838
         (371 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo...    78   2e-14
gb|PKA62818.1| Retrovirus-related Pol polyprotein from transposo...    70   2e-12
gb|PKA57601.1| Retrovirus-related Pol polyprotein from transposo...    64   1e-09
gb|PKA58053.1| Retrovirus-related Pol polyprotein from transposo...    63   1e-09
gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinen...    57   5e-07
gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis]      57   5e-07
gb|PKA67206.1| Retrovirus-related Pol polyprotein from transposo...    52   2e-06
gb|PNX71218.1| putative retrotransposon Ty1-copia subclass prote...    55   3e-06
gb|PON84950.1| Zinc finger, CCHC-type [Trema orientalis]               53   3e-06
gb|KYP63309.1| Retrovirus-related Pol polyprotein from transposo...    54   4e-06
emb|CDP17738.1| unnamed protein product [Coffea canephora]             55   5e-06
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    55   5e-06
gb|KYP61706.1| Retrovirus-related Pol polyprotein from transposo...    54   5e-06
dbj|GAV72214.1| gag_pre-integrs domain-containing protein/UBN2_2...    54   6e-06
gb|PKU80393.1| Retrovirus-related Pol polyprotein from transposo...    54   8e-06

>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 365

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTL-IL 177
           EG  +LEH+N F+K+I++L +INV            SSL +SYDH+VTTILYGK TL + 
Sbjct: 3   EGANLLEHMNVFSKMISQLRSINVKLEEENEALLLLSSLPKSYDHLVTTILYGKDTLKVE 62

Query: 178 EVTSTILSNEIKKGQSKLRRMHRTWWLREGRRKGKF 285
           EV +T+LSNE++  QS    +        GR K KF
Sbjct: 63  EVNATLLSNEVRNKQSTGESLTVKTSQDRGRSKNKF 98


>gb|PKA62818.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 163

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLILE 180
           EG  +L+H+N F K+I++L +I+V            SSL +SYDH+VTTILY K TL +E
Sbjct: 30  EGVNLLKHMNVFCKMISQLRSIDVKLEDEDEALLLLSSLPKSYDHLVTTILYDKDTLKVE 89

Query: 181 -VTSTILSNEIKKGQSKLRRMHRTWWLREGRRKGKF 285
            V +T+LSNE++  QS    +        GR K KF
Sbjct: 90  KVNATLLSNEVRNKQSTCESLTVKISQDRGRSKNKF 125


>gb|PKA57601.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 249

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTL-IL 177
           EG  +LEH+N F+K+I++  +I V            S L +SY+H++ TILYGK TL + 
Sbjct: 168 EGANLLEHMNVFSKMISQFHSIEVKLQEKDVILLFLSLLPKSYNHLIITILYGKDTLKVE 227

Query: 178 EVTSTILSNEIKKGQS 225
           EV +T+LSNE++  QS
Sbjct: 228 EVNATLLSNEVRNKQS 243


>gb|PKA58053.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 198

 Score = 63.2 bits (152), Expect = 1e-09
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLILE 180
           E   +LEH+N F+KII++  +I+V            S L +SYDH+VTTILY K TL +E
Sbjct: 113 EEADLLEHMNIFSKIISQFHSIDVKLEEEDKTLLLLSLLPKSYDHLVTTILYDKDTLKVE 172

Query: 181 -VTSTILSNEIKKGQS 225
            V +T+LSNE++  QS
Sbjct: 173 KVNATLLSNEVQNKQS 188


>gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 460

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLIL- 177
           EG +++EH+N F  ++++L  ++V            +SL +SY++I+TTILYGK TL + 
Sbjct: 117 EGASLMEHMNVFRGLVDQLAKVDVKIEEEDQALLLLTSLPDSYENIITTILYGKDTLKME 176

Query: 178 EVTSTILSNEIKK 216
           EV ST+L++E ++
Sbjct: 177 EVESTLLNHEKRR 189


>gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis]
          Length = 1371

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLIL- 177
           EG +++EH+N F  ++++L  ++V            +SL +SY++I+TTILYGK TL + 
Sbjct: 307 EGASLMEHMNVFRGLVDQLAKVDVKIEEEDQALLLLTSLPDSYENIITTILYGKDTLKME 366

Query: 178 EVTSTILSNEIKK 216
           EV ST+L++E ++
Sbjct: 367 EVESTLLNHEKRR 379


>gb|PKA67206.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 85

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +1

Query: 43  IINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLILE-VTSTILSNEIKKG 219
           +I++L +I++            SSL +SYDH++TTILYGK TL +E V +T+ SNE++  
Sbjct: 1   MISQLRSIDIKLEEDDEALLLLSSLPKSYDHLITTILYGKDTLKMEKVNATLFSNEVRNK 60

Query: 220 QS 225
           QS
Sbjct: 61  QS 62


>gb|PNX71218.1| putative retrotransposon Ty1-copia subclass protein [Trifolium
           pratense]
 gb|PNY02521.1| putative retrotransposon Ty1-copia subclass protein [Trifolium
           pratense]
          Length = 257

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLILE 180
           EG+ + +HVN FN II EL+ + V             SL  SY H+V T++YGK T+ L 
Sbjct: 115 EGSDLQQHVNTFNNIITELVKLGVKIDDEDSAIMLLCSLPSSYKHLVNTLIYGKDTISLN 174

Query: 181 V-TSTILSN 204
           V T+T+LS+
Sbjct: 175 VITATLLSH 183


>gb|PON84950.1| Zinc finger, CCHC-type [Trema orientalis]
          Length = 147

 Score = 53.1 bits (126), Expect = 3e-06
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLIL- 177
           EGTT+ +H+   N I++EL AI V             SL  SY+H+   ++YGK+T+I  
Sbjct: 3   EGTTISDHLGILNGIVSELEAIGVKIDDEDKALRLIWSLPSSYEHMKLILVYGKETVIFS 62

Query: 178 EVTSTILSNE 207
           EVTS +LS E
Sbjct: 63  EVTSNLLSEE 72


>gb|KYP63309.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 240

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLIL- 177
           E  ++ +HV+ FNKII +L +I+V            SSL + ++H V T+LYGK +LI+ 
Sbjct: 89  EEKSLKKHVDDFNKIILDLKSIDVKIDDEDQAIILLSSLPKRFEHFVDTMLYGKASLIMA 148

Query: 178 EVTSTILSNEIKK-GQSKLRRMHRTWWLREGRRKGKFK 288
           EV +T+ S EI++ G SK  ++    + R  + K  FK
Sbjct: 149 EVKATLNSKEIQRNGDSKGEQVAEGLFTRGRQEKKDFK 186


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +1

Query: 4   GTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLILE- 180
           GTT+ EH+  FN+++ +LL ++V            SSL + ++H+ TT+L+GK+ + L+ 
Sbjct: 142 GTTMNEHITIFNQLVADLLNLDVNFEDEDLALMLLSSLPDEFEHLETTLLHGKENVSLDA 201

Query: 181 VTSTILSNEIKKGQSKLRRM 240
           V S + S E++K   K +++
Sbjct: 202 VCSALYSRELRKQDKKKKKV 221


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLIL- 177
           EGT  L H+N FN +I +L  + V            +SL  SYD++ TTIL+GK T+ L 
Sbjct: 114 EGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELK 173

Query: 178 EVTSTILSNE 207
           +VTS +L NE
Sbjct: 174 DVTSALLLNE 183


>gb|KYP61706.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 295

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLIL- 177
           E  ++ +HV+ FNKII +L +I+V            SSL + ++H V T+LYGK +LI+ 
Sbjct: 6   EEKSLKKHVDDFNKIILDLKSIDVKIDDEDQAIILLSSLPKRFEHFVDTMLYGKASLIMA 65

Query: 178 EVTSTILSNEIKK-GQSKLRRMHRTWWLREGRRKGKFK 288
           EV +T+ S EI++ G SK  ++    + R  + K  FK
Sbjct: 66  EVKATLNSKEIQRNGDSKGEQVAEGLFTRGRQEKKDFK 103


>dbj|GAV72214.1| gag_pre-integrs domain-containing protein/UBN2_2 domain-containing
           protein, partial [Cephalotus follicularis]
          Length = 265

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTL-IL 177
           EG ++ EH++ FNK+I++L   N+             SL  SYDH V T+LYG+ ++ + 
Sbjct: 5   EGMSIKEHIDNFNKVIHDLKNTNIKIDDEDQALILLCSLPSSYDHFVDTMLYGRDSIDVN 64

Query: 178 EVTSTILSNEIKKGQSK 228
           +V   + S E+KK  SK
Sbjct: 65  DVKDVLQSRELKKYVSK 81


>gb|PKU80393.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 257

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
 Frame = +1

Query: 1   EGTTVLEHVNFFNKIINELLAINVXXXXXXXXXXXXSSLSESYDHIVTTILYGKKTLIL- 177
           E   +++H+N FNK+I +L  ++V            SSL ++Y++IV T+LYGK+TL L 
Sbjct: 113 ENQELIKHLNDFNKLILDLRNVDVKIDEEDQGIILLSSLPKTYENIVDTMLYGKQTLTLT 172

Query: 178 EVTSTILSNEIKKGQSKLRRMHRTWWLREGRRKGK 282
           EV S ++S ++++   +    +    +  GR + +
Sbjct: 173 EVKSVLMSKDVRRKSDQKEDKNGNILIARGRSESR 207