BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00019871
         (398 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III s...    55   3e-06

>ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
 ref|XP_010927733.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
 ref|XP_010927734.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
 ref|XP_010927735.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
           guineensis]
          Length = 237

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
 Frame = +1

Query: 1   FIKVLRQPCMVHISVV-----------IRESHVFNMEITFNR-VPC*XXXXXXXXXXXXQ 144
           FI++LR+ C+ HI  +           I+ES VF +E T  + V               +
Sbjct: 111 FIRILREQCLKHIERLQIATMEAIYKSIQESRVFKVECTMQQIVEIVNAMVLDKEIEELK 170

Query: 145 SSGVGEFSDVPAGKDCYRILKGGEGP 222
           S+G+G+FS VP+GK CY+ LKG EGP
Sbjct: 171 STGIGDFSKVPSGKICYKSLKGREGP 196