BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00015422
         (3927 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020266835.1| probable RNA-dependent RNA polymerase SHL2 [...  1825   0.0  
ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polyme...  1638   0.0  
ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...  1637   0.0  
ref|XP_020098906.1| probable RNA-dependent RNA polymerase SHL2 [...  1600   0.0  
gb|OAY64204.1| putative RNA-dependent RNA polymerase SHL2 [Anana...  1600   0.0  
ref|XP_020108971.1| probable RNA-dependent RNA polymerase SHL2 [...  1582   0.0  
gb|OAY62820.1| putative RNA-dependent RNA polymerase SHL2 [Anana...  1576   0.0  
ref|XP_018678117.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...  1573   0.0  
gb|OVA07789.1| RNA recognition motif domain [Macleaya cordata]       1540   0.0  
ref|XP_010254390.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1510   0.0  
ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Z...  1504   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1502   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1498   0.0  
ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1496   0.0  
gb|APR63701.1| SILENCING DEFECTIVE family protein 1 [Populus tom...  1495   0.0  
ref|XP_021597106.1| RNA-dependent RNA polymerase 6 [Manihot escu...  1489   0.0  
ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1489   0.0  
ref|XP_021670990.1| RNA-dependent RNA polymerase 6-like [Hevea b...  1486   0.0  
ref|XP_010648660.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1483   0.0  
ref|XP_002515520.1| PREDICTED: RNA-dependent RNA polymerase 6 [R...  1480   0.0  

>ref|XP_020266835.1| probable RNA-dependent RNA polymerase SHL2 [Asparagus officinalis]
 gb|ONK69832.1| uncharacterized protein A4U43_C05F27200 [Asparagus officinalis]
          Length = 1174

 Score = 1825 bits (4728), Expect = 0.0
 Identities = 885/1174 (75%), Positives = 1020/1174 (86%), Gaps = 7/1174 (0%)
 Frame = +2

Query: 92   MGSLGSSN-----ASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSS 256
            MGSL SS+     A HKD +ITQVS+AGFDA  TTA+SL  SLE +L+CVIWR RLKSSS
Sbjct: 1    MGSLDSSSKTQVQAHHKDKVITQVSIAGFDA-QTTAESLHLSLEKSLNCVIWRSRLKSSS 59

Query: 257  TPPDSYPDFDISEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSK 436
            TPPDSYPDF+        K+P +   +   PHAFLQF TPAGAQR +DAA RCEL++G K
Sbjct: 60   TPPDSYPDFEFPNPKPTSKKPTKSSRAPVVPHAFLQFGTPAGAQRAIDAAGRCELLVGQK 119

Query: 437  PLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLID 616
            P++ ++S+D+ +RINRRR I PF F D  FEIGSL  P+ F  AW+LDPKP+++V FL+D
Sbjct: 120  PVVVQSSADSLHRINRRRQISPFVFKDVCFEIGSLVGPSEFAVAWRLDPKPDNAVEFLVD 179

Query: 617  PFDNSCKLLFTGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSL 796
            PFD+SCKL+F+ +VAFT  GT++ + IRCN KLEFLLRDVME+K+  D M  V + Q+ L
Sbjct: 180  PFDSSCKLMFSREVAFTVKGTKDVDFIRCNLKLEFLLRDVMEVKVTTDAMPFVFLIQMGL 239

Query: 797  GAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKL 976
            GAAPL+YYRTADDDIH++   +LLDDEDPWIR+TDFTP+GAIGRCNCYRISM PRF  KL
Sbjct: 240  GAAPLIYYRTADDDIHDTSTGHLLDDEDPWIRSTDFTPNGAIGRCNCYRISMSPRFRGKL 299

Query: 977  KRAMEYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHK 1156
            ++A+ YM+ERRI+GLRP+RPI+VKDE N G +++DPFFCFH KEGVSF N+FMVNALVHK
Sbjct: 300  EKALAYMRERRIEGLRPERPILVKDEGNPGFVSSDPFFCFHNKEGVSFVNMFMVNALVHK 359

Query: 1157 GIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIK 1336
            GIF+QHR+TEEFFGLL  +S ++NDVALRHIY YKKP+FDA  RLKMVQ+WLL F RLIK
Sbjct: 360  GIFNQHRLTEEFFGLLRKKSEVLNDVALRHIYGYKKPIFDAYGRLKMVQDWLLKFPRLIK 419

Query: 1337 IPTASEDNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNS 1516
             P  S+DNMEVRRLVITPTKAYCLPPEIELANRVLR+YRD+SDRFLRVTFMDEGMQ LN 
Sbjct: 420  APIPSDDNMEVRRLVITPTKAYCLPPEIELANRVLRKYRDISDRFLRVTFMDEGMQSLNI 479

Query: 1517 NVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAW 1696
            +VL+FY APIV+E++ +S SQKT MFRRV++I+ KGF+LCGRKYSFLAFSSNQLRD+SAW
Sbjct: 480  HVLSFYPAPIVKEVTISSSSQKTTMFRRVRDIMYKGFHLCGRKYSFLAFSSNQLRDKSAW 539

Query: 1697 FFAEDKQTSVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRN 1876
            FFAEDK TSV DITSWMGKFQ+KNVAKYAARMGQCFSSTYATV++   EV+  LPDI+  
Sbjct: 540  FFAEDKGTSVQDITSWMGKFQNKNVAKYAARMGQCFSSTYATVQLHPGEVNQKLPDIENE 599

Query: 1877 TYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRE 2056
             YCFSDGIGKITP LA EVA+KL+LTE PPSAYQIR+AG KGV+AVWPGN+DGIRLSLR 
Sbjct: 600  KYCFSDGIGKITPALATEVAEKLRLTETPPSAYQIRFAGCKGVVAVWPGNNDGIRLSLRP 659

Query: 2057 SMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVN 2236
            SM KFQS H++LEVVSWTRFQPGFLNRQIVTLLSAL V DDVF+RMQDSMV KLD+ML++
Sbjct: 660  SMNKFQSSHSVLEVVSWTRFQPGFLNRQIVTLLSALGVDDDVFSRMQDSMVSKLDKMLID 719

Query: 2237 PDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPK 2416
            PDVAFDVLT+SCAEQGN+AAMMLSAGF PQ EPHLKAML CIRLSQLKDLSSKARIFVPK
Sbjct: 720  PDVAFDVLTSSCAEQGNIAAMMLSAGFTPQTEPHLKAMLLCIRLSQLKDLSSKARIFVPK 779

Query: 2417 GRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPC 2596
            GRWLMGC DELGVLE+GQCFIQ SSPSLENCFLKHGSKFSG+K NKQVIVGT+ALAKNPC
Sbjct: 780  GRWLMGCLDELGVLEEGQCFIQVSSPSLENCFLKHGSKFSGSKVNKQVIVGTIALAKNPC 839

Query: 2597 LHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPS 2776
            LHPGD+RILEAVDVPGL HLVDCLVFPQKG+RPHS+EASGSDLDGDLYFVTWDENLIPPS
Sbjct: 840  LHPGDIRILEAVDVPGLHHLVDCLVFPQKGERPHSNEASGSDLDGDLYFVTWDENLIPPS 899

Query: 2777 RRSWMPMAYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDD 2956
            ++SW P+ Y PA+ K EPR+IVHQ I+DFFV+N+S+ENLGVICNAHVVHADLSDYGAMDD
Sbjct: 900  KKSWPPLDYEPAEAKEEPRKIVHQLIVDFFVRNMSSENLGVICNAHVVHADLSDYGAMDD 959

Query: 2957 NCLKLAELAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKD 3136
             CLKLA+LAA AVDFPKTG  V++PAS KPKLYPDFM+K +  +YKSEKILGRLYRKIK 
Sbjct: 960  KCLKLAKLAAIAVDFPKTGVFVNLPASYKPKLYPDFMNKDEHITYKSEKILGRLYRKIKS 1019

Query: 3137 ASDEDNSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGE 3316
            ASDEDNSSELIS Y+DLP+D+  ++  A +YL EAWETKCSYDRQLNALLGQFRVDKEGE
Sbjct: 1020 ASDEDNSSELISAYEDLPYDQAFDISEAFDYLTEAWETKCSYDRQLNALLGQFRVDKEGE 1079

Query: 3317 VVTGHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDL--LQLTDEEKNVRY 3490
            VVTGH+ S+G +NSRKQGE+KERLKNAYYALNKKYRR+FE++G  L  L L+D+E+N  Y
Sbjct: 1080 VVTGHISSLGSYNSRKQGEVKERLKNAYYALNKKYRRSFEEIGGHLSQLSLSDDERNQIY 1139

Query: 3491 EKKASAWYCVTYHPKWVERSVAMREADGERVPPR 3592
            E KA+AWY VTYHPKWV++SV M+EADGER+  R
Sbjct: 1140 ESKAAAWYQVTYHPKWVKKSVEMKEADGERLGVR 1173


>ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
            guineensis]
 ref|XP_019706451.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
            guineensis]
 ref|XP_019706452.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
            guineensis]
          Length = 1198

 Score = 1638 bits (4242), Expect = 0.0
 Identities = 800/1211 (66%), Positives = 981/1211 (81%), Gaps = 4/1211 (0%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGSLG+     K+ +++QVS  GFD    +A+ L   +EH    +IWRCR+K+S TPP+S
Sbjct: 1    MGSLGAQERDQKELVVSQVSFGGFDE-RVSAKDLTDFMEHEAG-LIWRCRVKNSWTPPES 58

Query: 272  YPDF---DISEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPL 442
            YP+F   D+S+ ++K   P         PHAF+ FATP  A+R ++AA +CEL+L   PL
Sbjct: 59   YPNFNVLDVSDVLRKDDHP------KVVPHAFVHFATPDAAKRAINAAGKCELILNGHPL 112

Query: 443  IARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPF 622
             A +  D+S+RINRRR+ DPF F D   EIG+L S   FL AWK    P+  V+FLIDPF
Sbjct: 113  RANSGIDSSFRINRRRTTDPFRFVDVGVEIGTLASRDEFLVAWK---GPKLGVDFLIDPF 169

Query: 623  DNSCKLLFTGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGA 802
            D  C++LF+ + AF     +E  VI+C+FK+EFL+RD+ E+K+  D   HV++FQLS  +
Sbjct: 170  DGCCRILFSKETAFAFKDIKEMAVIKCDFKVEFLVRDINEVKLFTDRYPHVMLFQLS--S 227

Query: 803  APLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKR 982
             P VYYRTADDDIH +  ++LLDDEDPWIRTTDFTP GAI R + YR+S  PR+G  L++
Sbjct: 228  TPWVYYRTADDDIHVTASFSLLDDEDPWIRTTDFTPGGAISRSSSYRVSFSPRYGRILEK 287

Query: 983  AMEYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGI 1162
            ++ Y++ERRI    P RP+ V++E  FG +  DPFF   YKEG+SF+ +F+V+ALVHKGI
Sbjct: 288  SLAYLRERRIAEHWPKRPLAVREEPEFGTLMPDPFFSVQYKEGISFSIMFLVDALVHKGI 347

Query: 1163 FSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIP 1342
             +QH+++EEFF LL  QS  VN++ALRHI+AYK P+FD  +RLK+VQ+WLL   +L+K  
Sbjct: 348  VNQHQLSEEFFALLRSQSDAVNEIALRHIWAYKTPIFDPRKRLKLVQDWLLKNPKLLKSS 407

Query: 1343 TASEDNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNV 1522
               +D+ EVRRLVITPTKAYCLPPE+EL+NRVLR Y+ ++DRFLRVTFMDEGMQ LN+NV
Sbjct: 408  KLLDDSTEVRRLVITPTKAYCLPPEVELSNRVLRNYKKVADRFLRVTFMDEGMQPLNNNV 467

Query: 1523 LNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFF 1702
            LN+YVAPIV+E+++NS  QKT +FRRV+NI+  GF+LCGR+YSFLAFSSNQLRDRSAWFF
Sbjct: 468  LNYYVAPIVKELTSNSFPQKTTVFRRVRNILLDGFHLCGRRYSFLAFSSNQLRDRSAWFF 527

Query: 1703 AEDKQTSVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTY 1882
            AED  TSV  I +WMGKF +KNVAK AARMGQCFSSTYATV+VP  + +P LPDI+RN Y
Sbjct: 528  AEDSNTSVMAIRNWMGKFANKNVAKCAARMGQCFSSTYATVDVPLDQFNPLLPDIERNGY 587

Query: 1883 CFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESM 2062
             FSDGIGKI P+LA+EVA+KLQLTENPPSAYQIRYAG+KGV+AVWP +DDG+RLSLR SM
Sbjct: 588  VFSDGIGKIIPELAIEVAEKLQLTENPPSAYQIRYAGFKGVVAVWPADDDGVRLSLRPSM 647

Query: 2063 YKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPD 2242
             KF+S HTMLEVVSWTRFQPGFLNRQIVTLLS+L V D VF  MQDSM+ KL+QMLV+ D
Sbjct: 648  NKFESSHTMLEVVSWTRFQPGFLNRQIVTLLSSLNVADSVFESMQDSMIYKLNQMLVDTD 707

Query: 2243 VAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGR 2422
            VAFDVLT+SCAEQGN AA+MLSAGF PQ+EPHLKAMLSCIR +QL DL +KARIFVPKGR
Sbjct: 708  VAFDVLTSSCAEQGNTAAIMLSAGFKPQMEPHLKAMLSCIRSAQLGDLLAKARIFVPKGR 767

Query: 2423 WLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLH 2602
            WLMGC DELGVLE GQCFIQ+S PSLENCF+KHGS+FS  K+N+QVIVGTVA+AKNPCLH
Sbjct: 768  WLMGCLDELGVLEHGQCFIQSSIPSLENCFMKHGSRFSLLKKNRQVIVGTVAIAKNPCLH 827

Query: 2603 PGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRR 2782
            PGD+RILEAVDVP L HLVDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS++
Sbjct: 828  PGDIRILEAVDVPSLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKK 887

Query: 2783 SWMPMAYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNC 2962
            SW+PM YTPA+PKL+PR +  +DIIDFF+KN+ NENLGVICNAHVVHAD S+YGA+D+NC
Sbjct: 888  SWIPMDYTPAEPKLQPRAVTPRDIIDFFLKNMVNENLGVICNAHVVHADRSEYGALDENC 947

Query: 2963 LKLAELAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDAS 3142
            L+LAELAATAVDFPKTGK+V MP+ LKPK+YPDFM K D  SYKS+K+LGRLYR IK A+
Sbjct: 948  LQLAELAATAVDFPKTGKLVTMPSGLKPKVYPDFMGKDDHMSYKSQKVLGRLYRNIKYAA 1007

Query: 3143 DEDNSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVV 3322
            D D S+EL    ++LP+D +L++ GAS YL +AW+ KCSYD QLNALL Q+RV  EGEVV
Sbjct: 1008 DNDVSTELPCTAEELPYDTDLDIPGASYYLADAWQNKCSYDGQLNALLAQYRVRSEGEVV 1067

Query: 3323 TGHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKA 3502
            TGH+ S+ K+NSRKQGE+KERLKNAY AL+K++RR FED+G D  QLTD+EK+V YE++A
Sbjct: 1068 TGHIWSLPKYNSRKQGELKERLKNAYSALHKEFRRIFEDMGPDFQQLTDDEKSVSYEQRA 1127

Query: 3503 SAWYCVTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPI 3679
            SAWY VTYHP+W++RS  ++E DG+ VP RLSFAW+ ADYLVRIKI S+D  K    +PI
Sbjct: 1128 SAWYQVTYHPRWIKRSGEIKEPDGDVVPARLSFAWVAADYLVRIKISSQDRQKFDNSRPI 1187

Query: 3680 DSLASYLYERM 3712
            D+LA YL ER+
Sbjct: 1188 DTLACYLSERI 1198


>ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
            SHL2 [Phoenix dactylifera]
          Length = 1198

 Score = 1637 bits (4239), Expect = 0.0
 Identities = 801/1208 (66%), Positives = 980/1208 (81%), Gaps = 1/1208 (0%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGSLG+     K+ +++QVS  GFD    +A+ L   LEH    +IWRCR+K+S TPP+S
Sbjct: 1    MGSLGADERDQKELVVSQVSFGGFDE-RVSAKDLTDFLEHEAG-LIWRCRVKNSWTPPES 58

Query: 272  YPDFDISEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIAR 451
            YPD+D+ +    +++   P      PHAF+ FAT   A+R ++AA +CELVL   PL A 
Sbjct: 59   YPDYDVLDVSDVRRKDDYP---KVVPHAFVHFATLDAAKRAINAAGKCELVLQGCPLRAN 115

Query: 452  ASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNS 631
            + +D+S+RI+RRR++DPF F D   EIG+L S   FL AWK    P+S V+FLIDPFD  
Sbjct: 116  SGTDSSFRISRRRTMDPFRFTDVGVEIGTLASRDEFLVAWK---GPKSGVDFLIDPFDGR 172

Query: 632  CKLLFTGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPL 811
            C++LF+ + AF     +E  V++C+FK+EFL RD+ E+K+  D     ++FQL+  + P 
Sbjct: 173  CRILFSKETAFAFKDIKEMAVLKCDFKVEFLARDINEVKLFTDQYPPAMLFQLA--STPW 230

Query: 812  VYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAME 991
            VYYRTADDDI  +  ++LLDDEDPWIRTTDFTP GAI RC  YRIS  PR+G  LK ++ 
Sbjct: 231  VYYRTADDDILVTAPFSLLDDEDPWIRTTDFTPGGAISRCCSYRISFSPRYGRILKESLA 290

Query: 992  YMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQ 1171
            Y+KERRI   RP RP+VV +E +FG +  DPFF   +KEG+SF+ +F+V+ALVHKGI +Q
Sbjct: 291  YLKERRIAEHRPKRPLVVLEEPDFGTLMPDPFFSVQHKEGISFSIMFLVDALVHKGIVNQ 350

Query: 1172 HRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTAS 1351
            H+++EEFF LL  QS  +N+ ALRHI+AYK P+FDACRRLK+VQ+WLL   + +K    S
Sbjct: 351  HQLSEEFFALLRSQSDSMNETALRHIWAYKTPIFDACRRLKLVQDWLLKNPKFLKSSKLS 410

Query: 1352 EDNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNF 1531
            +D+ EVRRLVITPTKAYCLPP +EL+NRVLR Y++++DRFLRVTFMDEGMQ+LN+NVLN+
Sbjct: 411  DDSSEVRRLVITPTKAYCLPPGVELSNRVLRNYKEVADRFLRVTFMDEGMQKLNNNVLNY 470

Query: 1532 YVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAED 1711
            YVAPIV+E+++NS  QKT +FRRV++I+  GF+LCGR+YSFLAFSSNQLRDRSAWFFAED
Sbjct: 471  YVAPIVKELTSNSFPQKTTVFRRVRSILIDGFHLCGRRYSFLAFSSNQLRDRSAWFFAED 530

Query: 1712 KQTSVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFS 1891
              TSV DI  WMGKF +KNVAK AARMGQCFSSTYATV+VP  +V+P LPDI+R  Y FS
Sbjct: 531  SNTSVEDIRDWMGKFANKNVAKCAARMGQCFSSTYATVDVPPDQVNPLLPDIERKGYIFS 590

Query: 1892 DGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKF 2071
            DGIGKITP+LAMEVA+KLQLTENPPSAYQIRYAG KGV+AVWPG+DDGIRLSLR SM KF
Sbjct: 591  DGIGKITPELAMEVAEKLQLTENPPSAYQIRYAGTKGVVAVWPGDDDGIRLSLRPSMNKF 650

Query: 2072 QSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAF 2251
            +S HTMLEVVSWTRFQPGFLNRQIVTLLS+L VPD VFA MQDSM+ KL+QMLV+ DVAF
Sbjct: 651  ESSHTMLEVVSWTRFQPGFLNRQIVTLLSSLNVPDSVFASMQDSMIYKLNQMLVDTDVAF 710

Query: 2252 DVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLM 2431
            DVLT+SCAEQGN AA+MLSAGF PQ EPHLKAMLSCIR +QL DL +KAR FVPKGRWLM
Sbjct: 711  DVLTSSCAEQGNTAAIMLSAGFKPQTEPHLKAMLSCIRSAQLGDLLAKARXFVPKGRWLM 770

Query: 2432 GCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGD 2611
            GC DELGVLE GQCFIQ+S PSLENCF+KHGS+FSG K+N+QVIVGTVA+AKNPCLHPGD
Sbjct: 771  GCLDELGVLEHGQCFIQSSIPSLENCFMKHGSRFSGIKKNRQVIVGTVAIAKNPCLHPGD 830

Query: 2612 VRILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWM 2791
            +RILEAVDVP L HLVDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPP ++SW+
Sbjct: 831  IRILEAVDVPSLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPGKKSWI 890

Query: 2792 PMAYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKL 2971
            PM YTPA+PKLEPR +  +DIIDFF+KN+ NENLGVICNAHVVHAD S+YGA+D+ CL+L
Sbjct: 891  PMDYTPAKPKLEPRGVTPRDIIDFFLKNMVNENLGVICNAHVVHADCSEYGALDEKCLQL 950

Query: 2972 AELAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDED 3151
            AELAATAVDFPKTGK+V MP +LKPK+YPDFM K D  SY+S+K+LG LYR IKDA+D D
Sbjct: 951  AELAATAVDFPKTGKLVMMPPALKPKVYPDFMGKDDHMSYQSQKVLGILYRNIKDATDND 1010

Query: 3152 NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 3331
             SSEL+   ++LP+D +L++ GAS+YL +AW  +CSYD QLNALL Q+RV  EGEVVTGH
Sbjct: 1011 VSSELLCTAEELPYDADLDIPGASDYLADAWXKQCSYDGQLNALLAQYRVRSEGEVVTGH 1070

Query: 3332 LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 3511
            + S+ K+NSRKQGE+KERL+NAY AL+K++RR FE++G D  QLTD+EK + YE+KASAW
Sbjct: 1071 IWSLPKYNSRKQGELKERLRNAYSALHKEFRRIFENMGPDFQQLTDDEKCLSYEQKASAW 1130

Query: 3512 YCVTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 3688
            Y VTY P+W+++   + EADG+ VP RLSFAWI ADYLVRIKI+S D G+    +PID+L
Sbjct: 1131 YQVTYQPRWIKKLSEIEEADGDAVPARLSFAWIAADYLVRIKIRSGDRGRFDNKRPIDTL 1190

Query: 3689 ASYLYERM 3712
            A YL ER+
Sbjct: 1191 ACYLSERI 1198


>ref|XP_020098906.1| probable RNA-dependent RNA polymerase SHL2 [Ananas comosus]
 ref|XP_020098907.1| probable RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1234

 Score = 1600 bits (4144), Expect = 0.0
 Identities = 794/1241 (63%), Positives = 981/1241 (79%), Gaps = 34/1241 (2%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGS+GS   +    +++QVS  GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKETAV--VVSQVSFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 272  YPDF------DISEDMKKKKQPARPGPSSTA----------------------PHAFLQF 367
            YPDF      D   D       A    SS++                      PHAF+ F
Sbjct: 57   YPDFFSSSNADADADADAFSVAASSSSSSSSSSLTTSTTATTIRDKDDYPKVVPHAFVHF 116

Query: 368  ATPAGAQRVLDAAARCELVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTS 547
            A+P  A+R ++AA RC+LVL  +PL A  ++++S+R +RRR+ DPF F D R +IGSL +
Sbjct: 117  ASPDAAKRAMNAAGRCDLVLRGRPLRAHCAAESSFRASRRRTTDPFKFSDVRLDIGSLVA 176

Query: 548  PTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTGDVAFTANGTREFEVIRCNFKLEFLL 727
               F A+W   P    + +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL 
Sbjct: 177  RDDFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLA 235

Query: 728  RDVMELKIGADGMQHVLMFQLSLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFT 907
            RD+ ++++  D     ++ QL+  +AP V YRTADDDI+ SV +NLLDDEDPWIRTTDFT
Sbjct: 236  RDIADVRLYTDRAPLAMLLQLT--SAPFVSYRTADDDIYTSVPFNLLDDEDPWIRTTDFT 293

Query: 908  PSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDP 1084
            P+GA+GRC+ Y+IS+ PRFG KL+RA++Y+++RRI   RP+RP+ V+ E +FG   ATD 
Sbjct: 294  PTGAVGRCSSYKISLSPRFGAKLERALDYLRKRRIPDYRPNRPLAVRPEPDFGFSPATDH 353

Query: 1085 FFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKK 1264
            FF  H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQS +VN+ ALRHI++YK+
Sbjct: 354  FFSIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQSGVVNETALRHIWSYKR 413

Query: 1265 PVFDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVRRLVITPTKAYCLPPEIELANRVLR 1444
            P+FDA RRLK+VQEWLL   +L++    ++DN EVRRLVITPTKAYC+PP IEL+NRVLR
Sbjct: 414  PIFDAYRRLKLVQEWLLNNPKLLRSSKLADDNAEVRRLVITPTKAYCIPPAIELSNRVLR 473

Query: 1445 RYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKG 1624
            RY++++DRFLRVTF DEGMQQLN++VLN+YVAPIVR+I++NS  QKT +F+RVK+I+  G
Sbjct: 474  RYKEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVRDITSNSYQQKTTVFKRVKSILMDG 533

Query: 1625 FNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSVHDITSWMGKFQDKNVAKYAARMGQCF 1804
            F LCGR+YSFLAFSSNQLRDRSAWFFAED +T+V  IT WMG+F ++NVAK AARMGQCF
Sbjct: 534  FYLCGRRYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSNRNVAKCAARMGQCF 593

Query: 1805 SSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIR 1984
            SSTYATVEVP  EV+P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIR
Sbjct: 594  SSTYATVEVPLREVNPVLPDIEGNGYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIR 653

Query: 1985 YAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSAL 2164
            YAG KGV+AVWPG+ DGIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L
Sbjct: 654  YAGCKGVVAVWPGDVDGIRLSLRPSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSL 713

Query: 2165 EVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLK 2344
             VPD VFARMQ+SM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLK
Sbjct: 714  SVPDSVFARMQESMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLK 773

Query: 2345 AMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHG 2524
            AMLSCIR +QL DL +K RIFVPKGRWLMGC DELGVLE GQCFIQ SSPSL+NCF+KHG
Sbjct: 774  AMLSCIRSAQLGDLLAKTRIFVPKGRWLMGCLDELGVLEHGQCFIQMSSPSLQNCFIKHG 833

Query: 2525 SKFSGTKENKQVIVGTVALAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSD 2704
            ++FSGTK N+QVIVG V +AKNPCLHPGDVRILEAVDVPGL  LVDCLVFPQKGDRPH++
Sbjct: 834  TRFSGTKMNRQVIVGAVVIAKNPCLHPGDVRILEAVDVPGLHQLVDCLVFPQKGDRPHAN 893

Query: 2705 EASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAQPKLEPRRIVHQDIIDFFVKNISN 2884
            EASGSDLDGDLYFVTWD +LIPP ++SW+PM YT A+ K  PR +  QDIIDFF+KN+ N
Sbjct: 894  EASGSDLDGDLYFVTWDGDLIPPGKKSWVPMDYTAAEAKQLPRTVSPQDIIDFFLKNMVN 953

Query: 2885 ENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKMVHMPASLKPKLYPDF 3064
            ENLGVICNAHVVHADLS+YGAMD+ CL+LAELAATAVDFPKTGK+V MP +L+PKLYPDF
Sbjct: 954  ENLGVICNAHVVHADLSEYGAMDEKCLQLAELAATAVDFPKTGKLVTMPPNLRPKLYPDF 1013

Query: 3065 MDKYDQHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYL 3232
            M K D  SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +LEV GAS+YL
Sbjct: 1014 MGKDDHMSYKSEKILGQLYREIRDASCDDPSSSSSAAQACSWEDVSYDTDLEVPGASDYL 1073

Query: 3233 VEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALN 3412
             +AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL 
Sbjct: 1074 FDAWNCKCAYDGQLNALLGQYKVCSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYTALR 1133

Query: 3413 KKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVERSVAMREADGERVPPR 3592
            K++R  FE  G D  +L+D+EK+V YE+KASAWY VTYHPKW+ +S  MRE +GE VP R
Sbjct: 1134 KEFRNVFETAGPDFNELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMRELEGEVVPTR 1193

Query: 3593 LSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 3712
            LSFAWI ADYLVRIK++ +D  K+   +P+D+LA YL +R+
Sbjct: 1194 LSFAWIAADYLVRIKVRCQDKSKLNQQRPVDALAVYLSDRI 1234


>gb|OAY64204.1| putative RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1234

 Score = 1600 bits (4142), Expect = 0.0
 Identities = 794/1241 (63%), Positives = 981/1241 (79%), Gaps = 34/1241 (2%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGS+GS   +    +++QVS  GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKETAV--VVSQVSFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 272  YPDF------DISEDMKKKKQPARPGPSSTA----------------------PHAFLQF 367
            YPDF      D   D       A    SS++                      PHAF+ F
Sbjct: 57   YPDFFSSSNADADADADAFSVAASSSSSSSSSSLTTSTTATTIRDKDDYPKVVPHAFVHF 116

Query: 368  ATPAGAQRVLDAAARCELVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTS 547
            A+P  A+R ++AA RC+LVL  +PL A  ++++S+R +RRR+ DPF F D R +IGSL +
Sbjct: 117  ASPDAAKRAMNAAGRCDLVLRGRPLRAHCAAESSFRASRRRTTDPFKFSDVRLDIGSLVA 176

Query: 548  PTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTGDVAFTANGTREFEVIRCNFKLEFLL 727
               F A+W   P    + +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL 
Sbjct: 177  RDDFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLA 235

Query: 728  RDVMELKIGADGMQHVLMFQLSLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFT 907
            RD+ ++++  D     ++ QL+  +AP V YRTADDDI+ SV +NLLDDEDPWIRTTDFT
Sbjct: 236  RDIADVRLYTDRAPLAMLLQLT--SAPFVSYRTADDDIYTSVPFNLLDDEDPWIRTTDFT 293

Query: 908  PSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDP 1084
            P+GA+GRC+ Y+IS+ PRFG KL+RA++Y+++RRI   RP+RP+ V+ E +FG   ATD 
Sbjct: 294  PTGAVGRCSSYKISLSPRFGAKLERALDYLRKRRIPDYRPNRPLAVRPEPDFGFSPATDH 353

Query: 1085 FFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKK 1264
            FF  H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQS +VN+ ALRHI++YK+
Sbjct: 354  FFSIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQSGVVNETALRHIWSYKR 413

Query: 1265 PVFDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVRRLVITPTKAYCLPPEIELANRVLR 1444
            P+FDA RRLK+VQEWLL   +L++    ++DN EVRRLVITPTKAYC+PP IEL+NRVLR
Sbjct: 414  PIFDAYRRLKLVQEWLLNNPKLLRSSKLADDNAEVRRLVITPTKAYCIPPAIELSNRVLR 473

Query: 1445 RYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKG 1624
            RY++++DRFLRVTF DEGMQQLN++VLN+YVAPIVR+I++NS  QKT +F+RVK+I+  G
Sbjct: 474  RYKEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVRDITSNSYQQKTTVFKRVKSILMDG 533

Query: 1625 FNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSVHDITSWMGKFQDKNVAKYAARMGQCF 1804
            F LCGR+YSFLAFSSNQLRDRSAWFFAED +T+V  IT WMG+F ++NVAK AARMGQCF
Sbjct: 534  FYLCGRRYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSNRNVAKCAARMGQCF 593

Query: 1805 SSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIR 1984
            SSTYATVEVP  EV+P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIR
Sbjct: 594  SSTYATVEVPLREVNPVLPDIEGNGYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIR 653

Query: 1985 YAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSAL 2164
            YAG KGV+AVWPG+ DGIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L
Sbjct: 654  YAGCKGVVAVWPGDVDGIRLSLRLSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSL 713

Query: 2165 EVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLK 2344
             VPD VFARMQ+SM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLK
Sbjct: 714  SVPDSVFARMQESMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLK 773

Query: 2345 AMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHG 2524
            AMLSCIR +QL DL +K RIFVPKGRWLMGC DELGVLE GQCFIQ SSPSL+NCF+KHG
Sbjct: 774  AMLSCIRSAQLGDLLAKTRIFVPKGRWLMGCLDELGVLEHGQCFIQMSSPSLQNCFIKHG 833

Query: 2525 SKFSGTKENKQVIVGTVALAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSD 2704
            ++FSGTK N+QVIVG V +AKNPCLHPGDVRILEAVDVPGL  LVDCLVFPQKGDRPH++
Sbjct: 834  TRFSGTKMNRQVIVGAVVIAKNPCLHPGDVRILEAVDVPGLHQLVDCLVFPQKGDRPHAN 893

Query: 2705 EASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAQPKLEPRRIVHQDIIDFFVKNISN 2884
            EASGSDLDGDLYFVTWD +LIPP ++SW+PM YT A+ K  PR +  QDIIDFF+KN+ N
Sbjct: 894  EASGSDLDGDLYFVTWDGDLIPPGKKSWVPMDYTAAEAKQLPRTVSPQDIIDFFLKNMVN 953

Query: 2885 ENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKMVHMPASLKPKLYPDF 3064
            ENLGVICNAHVVHADLS+YGAMD+ CL+LAELAATAVDFPKTGK+V MP +L+PKLYPDF
Sbjct: 954  ENLGVICNAHVVHADLSEYGAMDEKCLQLAELAATAVDFPKTGKLVTMPPNLRPKLYPDF 1013

Query: 3065 MDKYDQHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYL 3232
            M K D  SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +LEV GAS+YL
Sbjct: 1014 MGKDDHMSYKSEKILGQLYREIRDASCDDPSSSSSAAQACSWEDVSYDTDLEVPGASDYL 1073

Query: 3233 VEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALN 3412
             +AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL 
Sbjct: 1074 FDAWNCKCAYDGQLNALLGQYKVCSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYTALR 1133

Query: 3413 KKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVERSVAMREADGERVPPR 3592
            K++R  FE  G D  +L+D+EK+V YE+KASAWY VTYHPKW+ +S  MRE +GE VP R
Sbjct: 1134 KEFRNVFETAGPDFNELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMRELEGEVVPTR 1193

Query: 3593 LSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 3712
            LSFAWI ADYLVRIK++ +D  K+   +P+D+LA YL +R+
Sbjct: 1194 LSFAWIAADYLVRIKVRCQDKSKLNQQRPVDALAVYLSDRI 1234


>ref|XP_020108971.1| probable RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1232

 Score = 1582 bits (4096), Expect = 0.0
 Identities = 783/1239 (63%), Positives = 974/1239 (78%), Gaps = 32/1239 (2%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGS+GS   +  + +++QV   GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKET--EVVVSQVCFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 272  YPDF------DISEDMKKKKQPARPGPSSTAP--------------------HAFLQFAT 373
            YPDF      D+ +        A    SS++P                    HAF+ FA+
Sbjct: 57   YPDFFFSSSDDVDDASSSSSSSAAAAFSSSSPTIAPTTASVRDKDDYPKVVPHAFVHFAS 116

Query: 374  PAGAQRVLDAAARCELVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPT 553
            P  A+R ++AA RC+LVLG +PL A  ++++S+R++RRR+ DPF F D R +IGSL +  
Sbjct: 117  PDAAKRAMNAAGRCDLVLGGRPLRAHCAAESSFRVSRRRTTDPFKFSDVRLDIGSLLARD 176

Query: 554  HFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTGDVAFTANGTREFEVIRCNFKLEFLLRD 733
             F A+W   P    + +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL RD
Sbjct: 177  DFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLARD 235

Query: 734  VMELKIGADGMQHVLMFQLSLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPS 913
            + E+++  D     ++ QL+  +AP + YRTADDDI+ SV +NLLDDEDPWIRTTDF+P+
Sbjct: 236  IAEVRLYTDRASLAMLLQLT--SAPYISYRTADDDIYTSVPFNLLDDEDPWIRTTDFSPT 293

Query: 914  GAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDPFF 1090
            GA+GRC+ Y+IS+ PRFG KL+RA++Y+++RRI   RP+R +VV+ E +FG   ATD FF
Sbjct: 294  GAVGRCSSYKISLSPRFGGKLERALDYLRKRRIPDYRPNRQLVVRPEPDFGFSPATDHFF 353

Query: 1091 CFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPV 1270
              H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQ+ +VN+ ALRHI++YK+P+
Sbjct: 354  SIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQNGVVNETALRHIWSYKRPI 413

Query: 1271 FDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVRRLVITPTKAYCLPPEIELANRVLRRY 1450
            FDA RRLK+VQEWLL   +L++    ++   EVRRLVITPTKAYC+PP IEL+NRVLRRY
Sbjct: 414  FDAYRRLKLVQEWLLNNPKLLRSSKLADYYAEVRRLVITPTKAYCIPPAIELSNRVLRRY 473

Query: 1451 RDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFN 1630
            ++++DRFLRVTF DEGMQQLN++VLN+YVAPIV+EI++NS  QKT +F+RVK+I+  GF 
Sbjct: 474  KEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVKEITSNSYQQKTTVFKRVKSILEDGFY 533

Query: 1631 LCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSVHDITSWMGKFQDKNVAKYAARMGQCFSS 1810
            LCGRKYSFLAFSSNQLRDRSAWFFAED +T+V  IT WMG+F D+NVAK AAR+GQCFSS
Sbjct: 534  LCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSDRNVAKCAARIGQCFSS 593

Query: 1811 TYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYA 1990
            TYATVEVP  EV+P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIRYA
Sbjct: 594  TYATVEVPLREVNPVLPDIEGNRYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIRYA 653

Query: 1991 GYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEV 2170
            G KGV+AVWPG++ GIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L V
Sbjct: 654  GCKGVVAVWPGDEIGIRLSLRPSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSLSV 713

Query: 2171 PDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAM 2350
            PD VFARMQDSM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLKAM
Sbjct: 714  PDSVFARMQDSMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLKAM 773

Query: 2351 LSCIRLSQLKDLSSKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSK 2530
            LSCIR +QL DL  K RIFVPKGRWLMGC DEL VLE GQCFIQ SSPSL+NCF+KHG++
Sbjct: 774  LSCIRSAQLGDLLDKTRIFVPKGRWLMGCLDELAVLEHGQCFIQTSSPSLQNCFIKHGTR 833

Query: 2531 FSGTKENKQVIVGTVALAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSDEA 2710
            FS TK N+Q+IVG V +AKNPCLHPGDVRILEAVDVP L  LVDCLVFPQKGDRPH++EA
Sbjct: 834  FSSTKMNRQIIVGVVVIAKNPCLHPGDVRILEAVDVPDLHQLVDCLVFPQKGDRPHANEA 893

Query: 2711 SGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAQPKLEPRRIVHQDIIDFFVKNISNEN 2890
            SGSDLDGDLYFVTWD++LIPP +RSW+PM Y  A+ K  PR +  QDIIDFF+KN+ NEN
Sbjct: 894  SGSDLDGDLYFVTWDDDLIPPGKRSWVPMDYAAAEAKKLPRTVSPQDIIDFFLKNMVNEN 953

Query: 2891 LGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKMVHMPASLKPKLYPDFMD 3070
            LGVICNAHVVHADLS+YGAMD+ CL+LAELA+TAVDFPKTG  V MP +L+PKLYPDFM 
Sbjct: 954  LGVICNAHVVHADLSEYGAMDEKCLQLAELASTAVDFPKTGNFVTMPPNLRPKLYPDFMG 1013

Query: 3071 KYDQHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYLVE 3238
            K D  SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +L+V GAS+YL +
Sbjct: 1014 KDDHMSYKSEKILGKLYREIRDASCDDPSSSSSAAQACSWEDVSYDMDLKVPGASDYLFD 1073

Query: 3239 AWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALNKK 3418
            AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL K+
Sbjct: 1074 AWNCKCAYDGQLNALLGQYKVFSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYAALRKE 1133

Query: 3419 YRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVERSVAMREADGERVPPRLS 3598
            +R  FE  G    +L+D+EK+V YE+KASAWY VTYHPKW+ +S  M+E +GE VP RLS
Sbjct: 1134 FRNVFETAGPHFDELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMQEPEGEMVPARLS 1193

Query: 3599 FAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 3712
            FAWI ADYLVRIKI+ +D  K+   +P+D LA YL ER+
Sbjct: 1194 FAWIAADYLVRIKIRCQDKSKLDQQRPVDVLAVYLSERI 1232


>gb|OAY62820.1| putative RNA-dependent RNA polymerase SHL2 [Ananas comosus]
          Length = 1232

 Score = 1576 bits (4082), Expect = 0.0
 Identities = 782/1239 (63%), Positives = 971/1239 (78%), Gaps = 32/1239 (2%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGS+GS   +  + +++QV   GFD    +A+ L   L+  +  +IWRCR+K+S TPPDS
Sbjct: 1    MGSVGSQKET--EVVVSQVCFGGFDEG-VSARELTDFLQQQVG-LIWRCRVKTSWTPPDS 56

Query: 272  YPDF------DISEDMKKKKQPARPGPSSTAP--------------------HAFLQFAT 373
            YPDF      D+ +        A    SS++P                    HAF+ FA+
Sbjct: 57   YPDFFFSSSDDVDDASSSSSSSAAAAFSSSSPTIAPTTASVRDKDDYPKVVPHAFVHFAS 116

Query: 374  PAGAQRVLDAAARCELVLGSKPLIARASSDTSYRINRRRSIDPFTFPDARFEIGSLTSPT 553
            P  A+R ++AA RC+LVLG +PL A  ++++S+R++RRR+ DPF F D R +IGSL +  
Sbjct: 117  PDAAKRAMNAAGRCDLVLGGRPLRAHCAAESSFRVSRRRTTDPFKFSDVRLDIGSLLARD 176

Query: 554  HFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTGDVAFTANGTREFEVIRCNFKLEFLLRD 733
             F A+W   P    + +F++DPFD  CK+LF  + AF   GTR+   IRC+FK+EFL RD
Sbjct: 177  DFCASWTC-PSGSGAADFVVDPFDGLCKILFARETAFAFKGTRDAATIRCDFKIEFLARD 235

Query: 734  VMELKIGADGMQHVLMFQLSLGAAPLVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPS 913
            + E+++  D     ++ QL+  +AP + YRTADDDI+ SV +NLLDDEDPWIRTTDF+P+
Sbjct: 236  IAEVRLYTDRASLAMLLQLT--SAPYISYRTADDDIYTSVPFNLLDDEDPWIRTTDFSPT 293

Query: 914  GAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGLRPDRPIVVKDEANFG-EIATDPFF 1090
            GA+GR + Y+IS+ PRFG KL+RA++Y+++RRI   RP+R +VV+ E +FG   ATD FF
Sbjct: 294  GAVGRGSSYKISLSPRFGGKLERALDYLRKRRIPDYRPNRQLVVRPEPDFGFSPATDHFF 353

Query: 1091 CFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPV 1270
              H+ EGV F  LF+VNALVHKGI +QH+++++FFGLL GQ+ +VN+ ALRHI++YK+P+
Sbjct: 354  SIHHAEGVGFPILFLVNALVHKGIVNQHQLSDQFFGLLRGQNGVVNETALRHIWSYKRPI 413

Query: 1271 FDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVRRLVITPTKAYCLPPEIELANRVLRRY 1450
            FDA RRLK+VQEWLL   +L++    ++   EVRRLVITPTKAYC+PP IEL+NRVLRRY
Sbjct: 414  FDAYRRLKLVQEWLLNNPKLLRSSKLADYYAEVRRLVITPTKAYCIPPAIELSNRVLRRY 473

Query: 1451 RDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFN 1630
            ++++DRFLRVTF DEGMQQLN++VLN+YVAPIV+EI++NS  QKT +F+RVK+I+  GF 
Sbjct: 474  KEVADRFLRVTFTDEGMQQLNNSVLNYYVAPIVKEITSNSYQQKTTVFKRVKSILEDGFY 533

Query: 1631 LCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSVHDITSWMGKFQDKNVAKYAARMGQCFSS 1810
            LCGRKYSFLAFSSNQLRDRSAWFFAED +T+V  IT WMG+F D+NVAK AAR+GQCFSS
Sbjct: 534  LCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVAAITKWMGRFSDRNVAKCAARIGQCFSS 593

Query: 1811 TYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYA 1990
            TYATVEVP  EV+P LPDI+ N Y FSDGIGKITPDLAMEVA+KL+LT+NPPSAYQIRYA
Sbjct: 594  TYATVEVPLREVNPVLPDIEGNRYIFSDGIGKITPDLAMEVAEKLKLTDNPPSAYQIRYA 653

Query: 1991 GYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEV 2170
            G KGV+AVWPG++ GIRLSLR SM KF+S HT+LEVVSW+RFQPGFLNRQI+TLLS+L V
Sbjct: 654  GCKGVVAVWPGDEIGIRLSLRPSMNKFESNHTVLEVVSWSRFQPGFLNRQIITLLSSLSV 713

Query: 2171 PDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAM 2350
            PD VFARMQDSM+CKL++MLV+ DVAF+VLTTSCAEQGN AAMMLSAGF PQ EPHLKAM
Sbjct: 714  PDSVFARMQDSMICKLNEMLVDTDVAFEVLTTSCAEQGNTAAMMLSAGFKPQTEPHLKAM 773

Query: 2351 LSCIRLSQLKDLSSKARIFVPKGRWLMGCFDELGVLEQGQCFIQASSPSLENCFLKHGSK 2530
            LSCIR +Q  DL  K RIFVPKGRWLMGC DEL VLE GQCFIQ SSPSL+NCF+KHG++
Sbjct: 774  LSCIRSAQFGDLLDKTRIFVPKGRWLMGCLDELAVLEHGQCFIQTSSPSLQNCFIKHGTR 833

Query: 2531 FSGTKENKQVIVGTVALAKNPCLHPGDVRILEAVDVPGLRHLVDCLVFPQKGDRPHSDEA 2710
            FS TK N+Q+IVG V +AKNPCLHPGDVRILEAVDVP L  LVDCLVFPQKGDRPH++EA
Sbjct: 834  FSSTKMNRQIIVGVVVIAKNPCLHPGDVRILEAVDVPDLHQLVDCLVFPQKGDRPHANEA 893

Query: 2711 SGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAQPKLEPRRIVHQDIIDFFVKNISNEN 2890
            SGSDLDGDLYFVTWD +LIPP +RSW+PM Y  A+ K  PR +  QDIIDFF+KN+ NEN
Sbjct: 894  SGSDLDGDLYFVTWDNDLIPPGKRSWVPMDYAAAEAKKLPRTVSPQDIIDFFLKNMVNEN 953

Query: 2891 LGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDFPKTGKMVHMPASLKPKLYPDFMD 3070
            LGVICNAHVVHADLS+YGAMD+ CL+LAELA+TAVDFPKTG  V MP +L+PKLYPDFM 
Sbjct: 954  LGVICNAHVVHADLSEYGAMDEKCLQLAELASTAVDFPKTGNFVTMPPNLRPKLYPDFMG 1013

Query: 3071 KYDQHSYKSEKILGRLYRKIKDASDEDNSSELISV----YQDLPFDENLEVHGASEYLVE 3238
            K D  SYKSEKILG+LYR+I+DAS +D SS   +     ++D+ +D +LEV GAS+YL +
Sbjct: 1014 KDDHMSYKSEKILGKLYREIRDASCDDPSSSSSAAQACSWEDVSYDMDLEVPGASDYLFD 1073

Query: 3239 AWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGKHNSRKQGEIKERLKNAYYALNKK 3418
            AW  KC+YD QLNALLGQ++V  EGEVVTGH+ SM K+NSRKQGE+KERLKNAY AL K+
Sbjct: 1074 AWNCKCAYDGQLNALLGQYKVFSEGEVVTGHIWSMPKNNSRKQGELKERLKNAYAALRKE 1133

Query: 3419 YRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYHPKWVERSVAMREADGERVPPRLS 3598
            +R  FE  G    +L+D+EK+V YE+KASAWY VTYHPKW+ +S  M+E +GE VP RLS
Sbjct: 1134 FRNVFETAGPHFDELSDDEKSVWYEQKASAWYQVTYHPKWLRKSCEMQEPEGEMVPARLS 1193

Query: 3599 FAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYERM 3712
            FAWI ADYLVRIKI+ +D  K+   +P+D LA YL ER+
Sbjct: 1194 FAWIAADYLVRIKIRCQDKSKLDQQRPVDVLAVYLSERI 1232


>ref|XP_018678117.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
            SHL2 [Musa acuminata subsp. malaccensis]
          Length = 1199

 Score = 1573 bits (4074), Expect = 0.0
 Identities = 775/1202 (64%), Positives = 961/1202 (79%), Gaps = 2/1202 (0%)
 Frame = +2

Query: 113  NASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDIS 292
            N   K+  ++QVS  GFDA   +A+ LA  LE+    +IWRCR+K+S TPP+SYP F  +
Sbjct: 7    NTEQKEMTVSQVSFGGFDA-KVSAKELADFLEYEAG-IIWRCRVKTSWTPPESYPVFKGT 64

Query: 293  EDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTSY 472
            +D      P +       PHAF+ FA P   ++ +DAA +C+LVL  +PL A   +++S+
Sbjct: 65   DDAFDV--PRKDDYGRVVPHAFVHFARPDAVKKAMDAAGKCDLVLNGRPLRANVGTESSF 122

Query: 473  RINRRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTG 652
            R+NRRR+ DPF F +A  EIG+L S   FL +WK    P+S+V+F+IDPFD+ CK+LF+ 
Sbjct: 123  RVNRRRTTDPFRFSNACVEIGNLVSRDEFLVSWK---GPDSAVDFVIDPFDDCCKILFSK 179

Query: 653  DVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRTAD 832
            + AF   G RE  +I C+FK+EFLLRD+ E+++  D    V+ FQL   +AP VYYRTAD
Sbjct: 180  ETAFYFKGLREMTLIMCDFKVEFLLRDINEVRVHKDAAPFVMQFQLI--SAPYVYYRTAD 237

Query: 833  DDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRI 1012
            DDI+ SV +NLLDDEDPWIRTTD TPSGAIGRCN YRIS+ PRFGPK++R++ Y++E  +
Sbjct: 238  DDIYTSVPFNLLDDEDPWIRTTDITPSGAIGRCNSYRISLSPRFGPKMERSLAYLREHGV 297

Query: 1013 DGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEF 1192
               RP   +VV+DE  +G   +DPFFC   K+G++FA +F+VNALVH+GI +QH+++EEF
Sbjct: 298  AENRPRCRLVVRDEPGYGAHMSDPFFCIQNKKGINFATMFLVNALVHRGIVNQHQLSEEF 357

Query: 1193 FGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVR 1372
            F LL  QS +VN  AL HI +YK P+FDA  RLK+VQEWLL   +L++    S+D +EVR
Sbjct: 358  FSLLRCQSEMVNGTALMHILSYKHPIFDAPGRLKLVQEWLLRNPKLLRHSKFSDDIIEVR 417

Query: 1373 RLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVR 1552
            +LVITPTKAYCLPPE+EL+NRVLR+Y++++DRFLRVTF DEGMQQLNSNVLN+YVAPIVR
Sbjct: 418  KLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFTDEGMQQLNSNVLNYYVAPIVR 477

Query: 1553 EISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAE-DKQTSVH 1729
            +I++NS  QKT +F+RVK+I+  GF+L G+KYSFLAFSSNQLRDRSAWFFAE     +V 
Sbjct: 478  DITSNSFPQKTTVFKRVKDILTNGFHLYGQKYSFLAFSSNQLRDRSAWFFAEVSGSITVA 537

Query: 1730 DITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKI 1909
             I +WMGKF +KNVAK AARMGQCFSSTYATV V   EV+ +L DIKRN Y FSDGIGKI
Sbjct: 538  TIRNWMGKFSNKNVAKCAARMGQCFSSTYATVNVTPNEVNSELEDIKRNGYVFSDGIGKI 597

Query: 1910 TPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTM 2089
            TP+LA+EVA+KL LTE+PPSAYQIRYAG KGV+AVWPGNDDGI+LSLR SM KF+S HT+
Sbjct: 598  TPELALEVAQKLHLTEDPPSAYQIRYAGCKGVVAVWPGNDDGIKLSLRPSMNKFESNHTI 657

Query: 2090 LEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTS 2269
            LEVVSWTRFQPGFLNRQIVTLLS+L+VPD VF RMQD+M+ KL+Q+L + +VAF++LTTS
Sbjct: 658  LEVVSWTRFQPGFLNRQIVTLLSSLKVPDSVFERMQDTMILKLNQILHDTNVAFEILTTS 717

Query: 2270 CAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDEL 2449
            CAEQGN AAMMLSAGF PQ EPHLKAMLSCIR +QL DL +K +IFVPKGR LMGC DEL
Sbjct: 718  CAEQGNTAAMMLSAGFRPQSEPHLKAMLSCIRSTQLGDLLAKTKIFVPKGRLLMGCLDEL 777

Query: 2450 GVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRILEA 2629
            GVLE GQCFIQAS+PSLENC  KHGS+FS ++ N+QVIVGTVA+ KNPCLHPGD+RILEA
Sbjct: 778  GVLEHGQCFIQASTPSLENCLSKHGSRFSASQNNRQVIVGTVAVGKNPCLHPGDIRILEA 837

Query: 2630 VDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTP 2809
            VDVP L HLVDCL+FPQ+GDRPH++EASGSDLDGDLYFVTWDENL+PP ++SW+PM YTP
Sbjct: 838  VDVPELHHLVDCLIFPQRGDRPHTNEASGSDLDGDLYFVTWDENLLPPGKKSWVPMDYTP 897

Query: 2810 AQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAAT 2989
            A+ K  PR+I+ QDIIDF++KN+ NEN GVICNAHVVHAD S++GA+D+NCLKLAELAAT
Sbjct: 898  AEVKQFPRQILPQDIIDFYLKNMVNENHGVICNAHVVHADRSEHGALDENCLKLAELAAT 957

Query: 2990 AVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDEDNSSELI 3169
            AVDFPKTGK+V MP +LKPK YPDFM K D+ SYKSEKILG+LYRKIKDA+D++  SEL 
Sbjct: 958  AVDFPKTGKIVTMPPALKPKTYPDFMGKVDRLSYKSEKILGKLYRKIKDATDDELPSELP 1017

Query: 3170 SVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMGK 3349
              ++DLP+D +LE+ G+ +YL +AW+ K  YDR LNALL Q+RV  EGEVVTGH+ S+ K
Sbjct: 1018 CTFEDLPYDTDLEIIGSLDYLADAWQNKVVYDRHLNALLAQYRVSSEGEVVTGHIWSLPK 1077

Query: 3350 HNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTYH 3529
            +NSRKQGE+KERLKNAY +L K++R  F+ +  DLLQLTD+EK   YE KASAWY VTYH
Sbjct: 1078 YNSRKQGELKERLKNAYSSLRKQFRHIFKTMSPDLLQLTDDEKCFFYEMKASAWYQVTYH 1137

Query: 3530 PKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSLASYLYE 3706
            P+WV++   ++E DG+ VP RLSFAWI ADYLVRIK++ ++ G     KPIDS ASYL  
Sbjct: 1138 PRWVKKYNELKEPDGDGVPARLSFAWIAADYLVRIKVRCQERGTPDNQKPIDSFASYLSG 1197

Query: 3707 RM 3712
            R+
Sbjct: 1198 RV 1199


>gb|OVA07789.1| RNA recognition motif domain [Macleaya cordata]
          Length = 1200

 Score = 1540 bits (3987), Expect = 0.0
 Identities = 767/1212 (63%), Positives = 951/1212 (78%), Gaps = 5/1212 (0%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGSLGS     K+ IITQVS+ GFD  + TA  L   LE+ +  +IWRCRLK+S TPPDS
Sbjct: 1    MGSLGSEK-DKKEMIITQVSLGGFDK-HVTATELTDFLENEIG-LIWRCRLKNSRTPPDS 57

Query: 272  YPDFDISEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIAR 451
            YP+FD+   M  ++   +       PHAF+ FA+P  A R+L+AA R +L+L    L   
Sbjct: 58   YPNFDVMNIMDIQR---KADDEKVEPHAFVHFASPDSATRILNAAGRGKLILNGNLLKVN 114

Query: 452  ASSDTSYRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDN 628
               ++S+ IN RRRS +PF F + R EIG+L S   F   WK    P S V+F+IDPFD+
Sbjct: 115  LGPESSFHINQRRRSKNPFKFSNVRVEIGTLVSRDEFFIGWK---GPLSGVDFVIDPFDS 171

Query: 629  SCKLLFTGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAP 808
            SCK+LFT + AF+   T    V++C+FK+E  +R+++E+K   D    +++ QL+  ++P
Sbjct: 172  SCKILFTKETAFSIKDTTNHAVMKCDFKVELFVREIIEVKKYKDTSSLIMVLQLA--SSP 229

Query: 809  LVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAM 988
             ++YRTADDDIH SV ++LLDDEDPWIRTTDFTP G IGRCNCYRIS+ PRFG K  +AM
Sbjct: 230  FLFYRTADDDIHVSVPFDLLDDEDPWIRTTDFTPGGVIGRCNCYRISVSPRFGSKFDKAM 289

Query: 989  EYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFS 1168
             Y+KE RI    P + + V++E +FG  ++D FFC  +KEG+SF  LFMVNA+VHKGIF+
Sbjct: 290  SYLKEWRIPNDCPRQQLRVREEPDFGMPSSDSFFCIQFKEGISFELLFMVNAVVHKGIFN 349

Query: 1169 QHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTA 1348
             H++++ FF LL  Q+  VN  AL HI +Y++PVFDA +RLK+VQEWLL    LIK    
Sbjct: 350  IHQLSDRFFELLRSQTKEVNVAALAHICSYRRPVFDASKRLKLVQEWLLRNPELIKSCKG 409

Query: 1349 SEDNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLN 1528
             +DN+EVRRLVITPTKAYCLPP +EL+NRVLR+Y++++DRFLRVTFMDEG+QQLN NVL+
Sbjct: 410  HDDNVEVRRLVITPTKAYCLPPAVELSNRVLRQYKEVADRFLRVTFMDEGLQQLNYNVLS 469

Query: 1529 FYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAE 1708
            +YVAPIV++I+NNS  QKTA++RRVK I   GF LCGRKYSFLAFSSNQLRD+SAWFFAE
Sbjct: 470  YYVAPIVKDITNNSFPQKTAVYRRVKTIAKDGFYLCGRKYSFLAFSSNQLRDQSAWFFAE 529

Query: 1709 DKQTSVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCF 1888
             ++  V +I SWMGKF D+NVAK AARMGQCFSSTYATVEVP+ +++P LPDI+RN Y F
Sbjct: 530  GEKIKVSNIKSWMGKFNDRNVAKCAARMGQCFSSTYATVEVPTNQINPGLPDIERNGYVF 589

Query: 1889 SDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYK 2068
            SDGIG +TPDLA EVA+KLQL  NPP AYQIR+AG KGVIA W G DDGIRLSLR SM K
Sbjct: 590  SDGIGMLTPDLAKEVAEKLQLGANPPCAYQIRFAGCKGVIACWEGKDDGIRLSLRPSMIK 649

Query: 2069 FQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVA 2248
            FQS H++LE+VSWTRFQPGFLNRQI+TLLS+L VPDDVF++MQDSMVCKLDQ+L N DVA
Sbjct: 650  FQSTHSILEIVSWTRFQPGFLNRQIITLLSSLGVPDDVFSKMQDSMVCKLDQILENTDVA 709

Query: 2249 FDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWL 2428
            F+VLT+SCAEQGN AAMMLSAGF PQ EPHL+ ML  IR +QL+DL +KARIFVP GRWL
Sbjct: 710  FEVLTSSCAEQGNTAAMMLSAGFKPQTEPHLRGMLISIRAAQLRDLLAKARIFVPSGRWL 769

Query: 2429 MGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPG 2608
            MGC DELGVLE GQCFIQ+S+PSLENCF +HG  FS TK N QVI GTV +AKNPCLHPG
Sbjct: 770  MGCLDELGVLENGQCFIQSSTPSLENCFSRHGIGFSETKRNLQVIKGTVVIAKNPCLHPG 829

Query: 2609 DVRILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSW 2788
            D+RILEAVD PGL HLVDCLVFPQKG+RPH++EASGSDLDGDLYF+TWDE+LIPPS+RSW
Sbjct: 830  DIRILEAVDAPGLHHLVDCLVFPQKGERPHTNEASGSDLDGDLYFLTWDESLIPPSKRSW 889

Query: 2789 MPMAYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLK 2968
            +PM YTPA  K  PR + H DI++FF K + NE LG ICNAHVVHAD S+YGAMD+ C++
Sbjct: 890  IPMDYTPADVKKLPRSVTHADIVEFFTKYLVNEKLGAICNAHVVHADQSEYGAMDEKCIQ 949

Query: 2969 LAELAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDE 3148
            LAELAATAVDFPKTGK+V MP SLKPK+YPDFM K D  SYKS KILG+LYRKIKDASDE
Sbjct: 950  LAELAATAVDFPKTGKLVTMPQSLKPKVYPDFMGKDDFQSYKSNKILGKLYRKIKDASDE 1009

Query: 3149 DNS-SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVT 3325
              S SE +   +D+P+D +LE+ G++++++++W  KC+YD ++ ALLGQF+V+ E EVVT
Sbjct: 1010 ATSTSEPLCAPEDIPYDTDLEIPGSADFIIDSWNHKCAYDEKVIALLGQFKVNTEEEVVT 1069

Query: 3326 GHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKAS 3505
            GH+ SM  +NSRKQGE+KE+LK+AY+AL K+++  FE +G D   LT  EKN  YE+KAS
Sbjct: 1070 GHVWSMPNYNSRKQGELKEKLKHAYHALKKEFKHIFEYLGEDSQNLTVGEKNSVYEQKAS 1129

Query: 3506 AWYCVTYHPKWVERSVAMREADG-ERVPPRLSFAWIPADYLVRIKIKSRDG--KVGTGKP 3676
            AWY VTYHP+WV++S+ +R+ DG +RV P LSFAW+PA+YLVRIKI+ R G   +   KP
Sbjct: 1130 AWYQVTYHPRWVKKSLELRDPDGDDRVTPMLSFAWVPAEYLVRIKIR-RQGIRNLDISKP 1188

Query: 3677 IDSLASYLYERM 3712
            I+SLASYL +R+
Sbjct: 1189 INSLASYLIDRI 1200


>ref|XP_010254390.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
 ref|XP_010254391.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
 ref|XP_010254392.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
 ref|XP_010254393.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
          Length = 1193

 Score = 1510 bits (3909), Expect = 0.0
 Identities = 750/1210 (61%), Positives = 934/1210 (77%), Gaps = 3/1210 (0%)
 Frame = +2

Query: 92   MGSLGSSNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDS 271
            MGS G+ N    D II+QVS  GFD  N TA  L   LE  +   IWRCRLK+SSTPP+S
Sbjct: 1    MGSEGTKN----DMIISQVSFGGFDN-NVTASELTDFLEKEIG-TIWRCRLKTSSTPPES 54

Query: 272  YPDFDISEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIAR 451
            YPD+D+++    +K     G     PHAF+ F +P  A   LDAA RC+LVL   PL   
Sbjct: 55   YPDYDVTDMDAIQKTD---GYDKVKPHAFVHFLSPEAATAALDAAGRCDLVLNRHPLKVN 111

Query: 452  ASSDTSYRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDN 628
                + + +N RRR IDPF  PD+  +IGSL     F+  WK        V+F++DPFD 
Sbjct: 112  LGPQSPFLLNQRRRKIDPFKIPDSCIKIGSLVGQDEFVVCWKAP-----QVDFIVDPFDR 166

Query: 629  SCKLLFTGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAP 808
            +CK+LFT + AF+   T  + VI+CNFKLEF + D+  +K        V++  L L ++P
Sbjct: 167  TCKILFTKETAFSFKDTMAYVVIKCNFKLEFFVSDISYIKQYTGRSSLVIL--LHLRSSP 224

Query: 809  LVYYRTADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAM 988
             +YYRTADDDI++SV +++LDDEDPWIRTTDFTPS  IGRCN YRIS+ PRFGP+L + M
Sbjct: 225  CIYYRTADDDIYDSVPFDMLDDEDPWIRTTDFTPSRVIGRCNSYRISISPRFGPRLNKVM 284

Query: 989  EYMKERRIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFS 1168
             Y+++ RI    P  P+ ++DE NFG + ++ FFC  +KEG+SF  +FM+NA++HKGI +
Sbjct: 285  NYLRKHRIPDESPRMPLRIRDEPNFGMLMSEFFFCIDHKEGMSFETIFMLNAVIHKGIIN 344

Query: 1169 QHRVTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTA 1348
            QH++++EFF LL  QS  VN  AL++IY+Y++PV +A   LK  Q  LL   +LIKI   
Sbjct: 345  QHQLSDEFFELLRSQSTDVNVTALQNIYSYRQPVLNAYTSLKDAQRCLLDNPKLIKISKG 404

Query: 1349 SEDNMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLN 1528
            S+D +E+R+LVITPTKAYCLPPE+EL+NRVLR+Y+ +++RFLRV+F DE MQQL+SN LN
Sbjct: 405  SDDFVEMRKLVITPTKAYCLPPEVELSNRVLRKYKHVANRFLRVSFKDERMQQLSSNALN 464

Query: 1529 FYVAPIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAE 1708
            +YVAPIVR+I++N   QKT +F RVK I++ GF LCGRKYSFLAFSSNQLRDRSAWFFAE
Sbjct: 465  YYVAPIVRDITSNPFPQKTTVFNRVKTILSNGFFLCGRKYSFLAFSSNQLRDRSAWFFAE 524

Query: 1709 DKQTSVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCF 1888
            DK   V ++  WMG+F ++NVAK AARMG CFSSTYATVEVP  EV+ +LPDI+RN Y F
Sbjct: 525  DKNIKVIEVKKWMGRFTNRNVAKCAARMGLCFSSTYATVEVPLKEVNLELPDIERNGYVF 584

Query: 1889 SDGIGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYK 2068
            SDGIG +TPDL+MEVA+KLQLT NPP AYQIRYAG KGVI  WPG +DGIRLSLR SM K
Sbjct: 585  SDGIGMLTPDLSMEVAEKLQLTANPPCAYQIRYAGCKGVIVCWPGKEDGIRLSLRPSMNK 644

Query: 2069 FQSEHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVA 2248
            F+S HT+LEV SWTRFQP +LNRQI+TLLSAL VPDDVF+RMQDSMV KL+QM+ N DVA
Sbjct: 645  FESRHTILEVCSWTRFQPSYLNRQIITLLSALCVPDDVFSRMQDSMVSKLNQMIENTDVA 704

Query: 2249 FDVLTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWL 2428
            FDV+T+SCAEQGN AA+MLSAGF PQ+EPHLK MLSCIR +QL+DL  K+RIFVP GRWL
Sbjct: 705  FDVVTSSCAEQGNTAAIMLSAGFKPQMEPHLKGMLSCIRAAQLRDLLEKSRIFVPSGRWL 764

Query: 2429 MGCFDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPG 2608
            MGC DEL VLE+GQCFIQ S PSLENCF KHGS+FS  K+N QV+ G VA+AKNPCLHPG
Sbjct: 765  MGCLDELAVLEEGQCFIQVSKPSLENCFSKHGSRFSEVKKNTQVVKGIVAIAKNPCLHPG 824

Query: 2609 DVRILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSW 2788
            D+RILEA+DVP L HL+DCLVFPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPS++S 
Sbjct: 825  DIRILEAIDVPSLHHLIDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDEHLIPPSKQSL 884

Query: 2789 MPMAYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLK 2968
            +PM Y+PA+ K  PR + H+D+IDFF+K++ NE LGVICNAHVVHADLS+YGA+D+ C++
Sbjct: 885  VPMDYSPAEVKKLPRDVNHRDLIDFFMKSMVNEKLGVICNAHVVHADLSEYGALDEKCIQ 944

Query: 2969 LAELAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDE 3148
            LAELAATAVDFPKTGK+V +P  LKPK YPDFM K +  SYKS KILG+LYRKIKD SDE
Sbjct: 945  LAELAATAVDFPKTGKVVTVPQELKPKRYPDFMGKEEFQSYKSNKILGKLYRKIKDFSDE 1004

Query: 3149 D-NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVT 3325
            D   SE+    +D+P+D +LEV G+S++L +AW  KC +D QL  LLGQ++V++E EVVT
Sbjct: 1005 DVEESEITFAAEDIPYDVHLEVLGSSDHLADAWNLKCLHDAQLTTLLGQYKVNREEEVVT 1064

Query: 3326 GHLCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKAS 3505
            GH+ SM K+NS KQGE+KERLKNAY AL K++R+AFE +  + LQLTD+EKN  YE+KAS
Sbjct: 1065 GHIWSMPKYNSNKQGELKERLKNAYNALKKEFRQAFEKI-DETLQLTDDEKNTIYEQKAS 1123

Query: 3506 AWYCVTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPID 3682
            AWY VTYHP+W+ +++ +RE + E  P  LSFAWIPADYLVRIKIK RD   V   KPI+
Sbjct: 1124 AWYQVTYHPRWIMKTLKLREHEDESNPAMLSFAWIPADYLVRIKIKHRDMENVDARKPIN 1183

Query: 3683 SLASYLYERM 3712
            +LA+YL +R+
Sbjct: 1184 ALANYLADRI 1193


>ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885880.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885881.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885882.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
 ref|XP_015885883.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
          Length = 1197

 Score = 1504 bits (3894), Expect = 0.0
 Identities = 748/1208 (61%), Positives = 935/1208 (77%), Gaps = 7/1208 (0%)
 Frame = +2

Query: 110  SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 289
            S  + K  ++TQVS+ GFD  +  A+ L+  LE  +  +++RCRLK+SSTPP+SYPD+ I
Sbjct: 3    SKENEKQMVVTQVSLGGFDR-HVRAKDLSDFLEDEIG-LVYRCRLKTSSTPPESYPDYTI 60

Query: 290  SEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTS 469
                 ++K   +       PHAF+ FA    A+ +LDAA RCEL+L  +PL      +  
Sbjct: 61   DTAAIERKDDYK----KVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENP 116

Query: 470  YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLF 646
            YR+N RRR+  P    D   +IG+L +   F  AW+    P   V+FL+DPFD +CK  F
Sbjct: 117  YRLNQRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWR---GPPYGVDFLVDPFDGTCKFCF 173

Query: 647  TGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRT 826
            T D AF+  G+    VI+C+FK+EFL+RD+ E K   D    VL+ QL+  +AP ++YRT
Sbjct: 174  TRDTAFSFKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLN--SAPRIWYRT 231

Query: 827  ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 1006
            ADDDI +SV +++LDD+DPWIRTTDFTPSGAIGR N YRIS+ PR G KLK+A+ Y++ER
Sbjct: 232  ADDDIDDSVPYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRER 291

Query: 1007 RI--DGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRV 1180
            R+  D LR   P+ ++ E +F    +DPFFC HYKE + F  +F+VNA++HKGIF+QH++
Sbjct: 292  RVHHDSLR--WPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQI 349

Query: 1181 TEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDN 1360
            ++ FF LL  Q   VN  AL+HI +YK+PVFDACRRLK+VQEWLL   +L K P   +D 
Sbjct: 350  SDGFFNLLRNQMKEVNVAALKHISSYKRPVFDACRRLKVVQEWLLRDPKLFKKPKRLDDI 409

Query: 1361 MEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVA 1540
             EVRRLVITPT+AYCLPPE+EL+NRVLR Y++++DRFLRVTFMDEGMQ +NSNVL ++VA
Sbjct: 410  AEVRRLVITPTRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVA 469

Query: 1541 PIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQT 1720
             IVREI++NS  QKT +F+R+K+I+  GF LCGRKYSFLAFSSNQLRDRSAWFFAEDK  
Sbjct: 470  SIVREITSNSFPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNI 529

Query: 1721 SVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGI 1900
            +V ++ SWMG+F ++NVAK AARMG CFSSTYA+VEVPS +V+   PDIKRN Y FSDGI
Sbjct: 530  NVFEVKSWMGRFTNRNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGI 589

Query: 1901 GKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVW-PGNDDGIRLSLRESMYKFQS 2077
            GKITPDLA+EVA+KL+L  NPP AYQIRYAG+KGV+A W P +DDG RLSLR SM KFQS
Sbjct: 590  GKITPDLALEVAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQS 649

Query: 2078 EHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDV 2257
             HT+LE+ SWTRFQPGFLNRQIVTLLSAL V D++F  MQ++M+ KL+QML++ D+AFDV
Sbjct: 650  NHTILEICSWTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDV 709

Query: 2258 LTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGC 2437
            LT SCAEQGNVAA+MLSAGF PQ EPHL+ ML+CIR +QL  L  KARIFVP GRWLMGC
Sbjct: 710  LTASCAEQGNVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGC 769

Query: 2438 FDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVR 2617
             DELGVLEQGQCFIQ S+PSLENCF KHGS+F+   +N +VI G V +AKNPCLHPGDVR
Sbjct: 770  LDELGVLEQGQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVR 829

Query: 2618 ILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPM 2797
            ILEAVDVP L HL DCLVFPQKG+RPH++EASGSDLDGDLYFVTWDENLIPPS++SW+PM
Sbjct: 830  ILEAVDVPDLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPM 889

Query: 2798 AYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAE 2977
             Y  A+ K   R +  +DII+FF KN+ NENLG ICNAHVVHADLS++GA+D+ CLKLA+
Sbjct: 890  QYDAAETKQLTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLAD 949

Query: 2978 LAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDED-- 3151
            LAATAVDFPKTGK+V MP +LKPKLYPDFM K +  SYKS KILG+LYRKIKDA DED  
Sbjct: 950  LAATAVDFPKTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVT 1009

Query: 3152 NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 3331
             SSE+  +  D+P+D +LEV GAS+++V+AWE KCSYD QLN LLGQ++V++E EVVTGH
Sbjct: 1010 ASSEINFLPSDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGH 1069

Query: 3332 LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 3511
            + SM K++SRKQGE+KERLK++Y AL K++R+ FE +     +L+D+EKN+ YE+KASAW
Sbjct: 1070 IWSMPKYSSRKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAW 1129

Query: 3512 YCVTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 3688
            Y VTYHP+WV++S+ ++E DG R    LSFAWI ADYL RIKI+ R  G V   KPI++L
Sbjct: 1130 YQVTYHPEWVKKSLDLQEPDGSRYAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINAL 1189

Query: 3689 ASYLYERM 3712
              YL +RM
Sbjct: 1190 GKYLSDRM 1197


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
 gb|PNT33711.1| hypothetical protein POPTR_006G253500v3 [Populus trichocarpa]
          Length = 1198

 Score = 1502 bits (3888), Expect = 0.0
 Identities = 742/1206 (61%), Positives = 932/1206 (77%), Gaps = 5/1206 (0%)
 Frame = +2

Query: 110  SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 289
            +  S K+ ++TQVS+ GFD  + TA+ L + LE  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    TEGSAKETVVTQVSLGGFDI-HVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 290  SEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTS 469
            ++  K  +           PHAF+ FA P  A   +DAA RCEL L +K L A    +  
Sbjct: 61   TDITKITRTEDY---RRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENP 117

Query: 470  YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLF 646
            + +N RRR   PF       EIG+L S   F   W+    P + V+FL+DPFD +C+  F
Sbjct: 118  FTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWR---GPPTGVDFLVDPFDGTCRFCF 174

Query: 647  TGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRT 826
            + + AF+   T E  VI+C+FK+EFL+RD+ E+K   +    VL+ QL+  +AP V+YRT
Sbjct: 175  SRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLA--SAPRVWYRT 232

Query: 827  ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 1006
            ADDDI  SV ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR GPKL++A++++KER
Sbjct: 233  ADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKER 292

Query: 1007 RIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTE 1186
            R+      RPI ++DE +FG   TDPFFC H+KEG++F  LF+VNA++HKGIF+QH+++ 
Sbjct: 293  RVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSN 352

Query: 1187 EFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDNME 1366
            +FF LL  Q   VN  AL+HIY Y++PVFDA ++LK+ QEWLL   +  K     +D  E
Sbjct: 353  DFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAE 412

Query: 1367 VRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPI 1546
            +RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +NSN LN++ API
Sbjct: 413  IRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPI 472

Query: 1547 VREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSV 1726
            VR I++ S  QKT +F+RV++I+ +GF LCGR+YSFLAFSSNQLRDRSAWFFAED+  +V
Sbjct: 473  VRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINV 532

Query: 1727 HDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGK 1906
              I SWMGKF +KN+AK AARMGQCFSSTYAT+EVP  EV+ DLPDIKRN Y FSDGIG 
Sbjct: 533  MAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGM 592

Query: 1907 ITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHT 2086
            ITPDLA EVA+KL+   +PP AYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT
Sbjct: 593  ITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHT 652

Query: 2087 MLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTT 2266
            +LE+ SWTRFQPGFLNRQI+TLLSAL VPD VF +MQ+ MV KL+QMLV+ DVAFDVLT 
Sbjct: 653  ILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTA 712

Query: 2267 SCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDE 2446
            SCAEQGNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC DE
Sbjct: 713  SCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDE 772

Query: 2447 LGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRILE 2626
            LGVLEQGQCFIQ S+  LENCF+KHGSKFS TK+N QV+ GTV +AKNPCLHPGD+RILE
Sbjct: 773  LGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILE 832

Query: 2627 AVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYT 2806
            AVD PGL HL DCLVFPQKG+RPH++EASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y 
Sbjct: 833  AVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYD 892

Query: 2807 PAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAA 2986
             A+ K   R + HQDI++FF KN++NENLG ICNAHVV ADLS+YGA+D+ CL LAELAA
Sbjct: 893  AAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAA 952

Query: 2987 TAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDEDN---S 3157
            TAVDFPKTGK+V MP+ LKPK+YPDFM K +  SYKS+KILGRLYR+IKDA D+D+   S
Sbjct: 953  TAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAAS 1012

Query: 3158 SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLC 3337
            SEL  V  D+P+D +LEV GA++++ +AW+ KCSYD QLN LL Q++V +E EVVTGH+ 
Sbjct: 1013 SELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVW 1072

Query: 3338 SMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYC 3517
            SM K +SRKQG++KERLK++Y  L +++R+ FE +  D  QL D+EKN+ YE+KASAWY 
Sbjct: 1073 SMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQ 1132

Query: 3518 VTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIK-SRDGKVGTGKPIDSLAS 3694
            VTYHP W+++S+ ++++DG  +   LSFAWI ADYL RIKI+ SR G V + KP++SLA 
Sbjct: 1133 VTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAK 1192

Query: 3695 YLYERM 3712
            YL +RM
Sbjct: 1193 YLADRM 1198


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
 gb|PNS92354.1| hypothetical protein POPTR_018G028100v3 [Populus trichocarpa]
          Length = 1200

 Score = 1498 bits (3879), Expect = 0.0
 Identities = 744/1208 (61%), Positives = 932/1208 (77%), Gaps = 7/1208 (0%)
 Frame = +2

Query: 110  SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 289
            +  S K+ ++TQVSV GFD  + TA+ L + L+  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    AEGSAKETVVTQVSVGGFDI-HVTAKDLLEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 290  SEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTS 469
            ++  K ++           PHAF+ FA P  A   ++A+ RCEL L +K L         
Sbjct: 61   TDITKIERTEDY---RRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNP 117

Query: 470  YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLF 646
            + +N RRR+  PF   D  FEIG+L S   F   W+    P S V+FL+DPFD +CK  F
Sbjct: 118  FTLNQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWR---GPPSGVDFLVDPFDGTCKFCF 174

Query: 647  TGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRT 826
            + + AF+   T E  VI+C+FK+EFL+RD+ E+    +    VL+ QL+  +AP V+YRT
Sbjct: 175  SRNTAFSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLA--SAPWVWYRT 232

Query: 827  ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 1006
            ADDDI   V ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR G KL++A++Y+KER
Sbjct: 233  ADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKER 292

Query: 1007 RIDGLRPD---RPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHR 1177
            R+  L+ +   R I + DE +FG   +DPFFC H+KEG++F  LF+VNA++HKGIF+QH+
Sbjct: 293  RVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQ 352

Query: 1178 VTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASED 1357
            ++ +FF LL  Q   VN  AL+HI  Y++PVF+A RRLK VQEWLL    L K P    D
Sbjct: 353  LSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGD 412

Query: 1358 NMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYV 1537
             +E+RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q++NSNVLN+YV
Sbjct: 413  VVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYV 472

Query: 1538 APIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQ 1717
            APIVR+I++NS  QKT +F+RV++I+ +GF LCGR+YSFLAFS+NQLRD+SAWFF+E++ 
Sbjct: 473  APIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERN 532

Query: 1718 TSVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDG 1897
             SV D+ SWMGKF ++N+AK AARMGQCFSSTYAT+EVP  EV+ DLPDI+RN Y FSDG
Sbjct: 533  ISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDG 592

Query: 1898 IGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQS 2077
            IG ITPDLA EVA+KL+L  +PP AYQIRYAG KGV+A WPG  DG+RLSLR SM KFQS
Sbjct: 593  IGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQS 652

Query: 2078 EHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDV 2257
             HT LE+ SWTRFQPGFLNRQI+TLLS L VPD VF +MQ++MV KL+QM VN DVAFDV
Sbjct: 653  NHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDV 712

Query: 2258 LTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGC 2437
            LT SCA+QGNVAA+MLSAGF P  EPHL+ ML+C+R +QL DL  K RIFVP GRWLMGC
Sbjct: 713  LTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGC 772

Query: 2438 FDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVR 2617
             DELG+LEQGQCFIQ S+ SLE CF+KHG+KFS  ++N QVI GTV +AKNPCLHPGDVR
Sbjct: 773  LDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVR 832

Query: 2618 ILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPM 2797
            +LEAVDVPGL HL DCLVFPQKG+RPH++EASGSDLDGDLYFVTWDENLIPPS+RSW+PM
Sbjct: 833  VLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPM 892

Query: 2798 AYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAE 2977
             Y  A+ KL  R + HQDII+FF KN+ N+NLG ICNAHVVHADLS+YGA D NCL LAE
Sbjct: 893  QYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAE 952

Query: 2978 LAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDED-- 3151
            LAATAVDFPKTGK+V MP  LKPK+YPDFM K +  SYKSEKILGRLYR+IKDA DED  
Sbjct: 953  LAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVA 1012

Query: 3152 NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 3331
             SSEL  V  D+P+D +LEV GAS+Y+ +AW+ KCSYD QLN LL Q++V +E EVVTGH
Sbjct: 1013 ASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGH 1072

Query: 3332 LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 3511
            + SM K++SRKQGE+K+RLK++Y +L K++R+ FE +  +  QL D EKN  YE+KASAW
Sbjct: 1073 IWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAW 1132

Query: 3512 YCVTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 3688
            Y V YHP WV++S+ +++ DG      LSFAWI ADYL RIKI+ R+ G V + KP++SL
Sbjct: 1133 YQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSL 1192

Query: 3689 ASYLYERM 3712
            A YL +RM
Sbjct: 1193 AKYLADRM 1200


>ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1195

 Score = 1496 bits (3874), Expect = 0.0
 Identities = 743/1206 (61%), Positives = 933/1206 (77%), Gaps = 5/1206 (0%)
 Frame = +2

Query: 110  SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 289
            +  S K+ ++TQVS+ GFD  + TA+ L + LE  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    TEGSAKETVVTQVSIGGFDI-HVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 290  SEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTS 469
            ++  K  +           PHAF+ FA P  A   +DAA RCEL L +K L A    +  
Sbjct: 61   ADLTKITRTEDY---RRVEPHAFVHFALPESATWAIDAADRCELFLNNKGLKASLGPENP 117

Query: 470  YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLF 646
            + +N RRR   PF   D   EIG+L S   F   W+    P + V+FL+DPFD +C+  F
Sbjct: 118  FTLNQRRRKTTPFKLSDVDVEIGTLVSRDEFFVGWR---GPPTGVDFLVDPFDGTCRFCF 174

Query: 647  TGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRT 826
            + + AF+   T E  VI+C+FK+EFL+RD+ E+K   +    VL+ QL+  +AP V+YRT
Sbjct: 175  SRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYKETSCLVLLLQLA--SAPWVWYRT 232

Query: 827  ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 1006
            ADDDI  SV ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR GPKL++A++++KER
Sbjct: 233  ADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKER 292

Query: 1007 RIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTE 1186
            R+      RPI ++DE +FG   TDPFFC H+KEG++F  LF+VNA++HKGIF+QH+++ 
Sbjct: 293  RVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSN 352

Query: 1187 EFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDNME 1366
            +FF LL  Q   VN  AL+HIY Y++PVFDA ++LK+ QEWLL   +L K     +D  E
Sbjct: 353  DFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVTQEWLLKNPKLFKNQKKLDDIAE 412

Query: 1367 VRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPI 1546
            +RRL+ITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +NSN LN++ API
Sbjct: 413  IRRLIITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGVQTMNSNALNYFAAPI 472

Query: 1547 VREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSV 1726
            VR I++ S  QKT +F+RV++I+ +GF LCGR+YSFLAFSSNQLRDRSAWFFAED+  +V
Sbjct: 473  VRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINV 532

Query: 1727 HDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGK 1906
              I SWMGKF +KN+AK AARMGQCFSSTYAT+EVP  EV+ DLPDIKRN Y FSDGIG 
Sbjct: 533  MAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGM 592

Query: 1907 ITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHT 2086
            ITPDLA EVA+KL+   +PPSAYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT
Sbjct: 593  ITPDLAREVAEKLKFDFDPPSAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHT 652

Query: 2087 MLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTT 2266
            +LE+ SWTRFQPGFLNRQI+TLLSAL VPD VF +MQ+ MV KL+QMLV+ DVAFDVLT 
Sbjct: 653  ILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQEIMVSKLNQMLVDSDVAFDVLTA 712

Query: 2267 SCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDE 2446
            SCAE GNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC DE
Sbjct: 713  SCAELGNVAAIMLSAGFKPQKEPHLRGMLNCVRAAQLWGLREKARIFVPSGRWLMGCLDE 772

Query: 2447 LGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRILE 2626
            L VLEQGQCFIQ S+  LENCF+KHGSKFS TK N QV+ GTV +AKNPCLHPGD+RILE
Sbjct: 773  LAVLEQGQCFIQVSNSYLENCFVKHGSKFSETKRNLQVVKGTVVIAKNPCLHPGDIRILE 832

Query: 2627 AVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYT 2806
            AVD PGL HL DCLVFPQKG+RPH++EASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y 
Sbjct: 833  AVDDPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYD 892

Query: 2807 PAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAA 2986
             A+ K   R + HQDII+FF KN++NENLG ICNAHVV ADLS+YGA+D+ CL LAELAA
Sbjct: 893  AAEAKQLTRPVNHQDIIEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAA 952

Query: 2987 TAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDEDN---S 3157
            TAVDFPKTGK+V MP+ LKPK+YPDFM K +  SYKS+KILGRLYR+IKDA D+D+   S
Sbjct: 953  TAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAAS 1012

Query: 3158 SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLC 3337
            S+L  V  D+P+D +LEV GA++Y+ +AW+ KCSYD QLN LL Q++V +E EVVTGH+ 
Sbjct: 1013 SDLNFVPGDVPYDLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVW 1072

Query: 3338 SMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYC 3517
            SM K +SR+QG++KERLK++Y  L +++R+ FE +  D  QL D+EKN+ YE+KASAWY 
Sbjct: 1073 SMPKGSSRQQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQ 1132

Query: 3518 VTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIK-SRDGKVGTGKPIDSLAS 3694
            VTYHP+W+++S+ ++++DG  +   LSFAWI ADYL RIKI+ SR G V + KPI+SLA 
Sbjct: 1133 VTYHPRWIQKSLELQDSDGAAM---LSFAWIAADYLARIKIRHSRIGNVDSAKPINSLAK 1189

Query: 3695 YLYERM 3712
            YL +RM
Sbjct: 1190 YLADRM 1195


>gb|APR63701.1| SILENCING DEFECTIVE family protein 1 [Populus tomentosa]
          Length = 1199

 Score = 1495 bits (3871), Expect = 0.0
 Identities = 742/1207 (61%), Positives = 931/1207 (77%), Gaps = 6/1207 (0%)
 Frame = +2

Query: 110  SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 289
            +  S K+ ++TQVS+ GFD  + TA+ L + LE  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    TEGSAKETVVTQVSLGGFDI-HVTAKDLLEYLEREIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 290  SEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTS 469
            ++  K  +           PHAF+ FA P  A   +DAA RCEL L +K L A    +  
Sbjct: 61   TDITKITRTEDY---RRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENP 117

Query: 470  YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLF 646
            + +N RRR   PF       EIG+L S   F   W+    P + V+FL+DPFD +C+  F
Sbjct: 118  FTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWR---GPPTGVDFLVDPFDGTCRFCF 174

Query: 647  TGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRT 826
            + + AF+   T E  VI+C+FK+EFL+RD+ E+K   +    VL+ QL+  +AP V+YRT
Sbjct: 175  SRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLA--SAPRVWYRT 232

Query: 827  ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 1006
            ADDDI  SV ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR GPKL++A++++KER
Sbjct: 233  ADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKER 292

Query: 1007 RIDGLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTE 1186
            R+      RPI ++DE +FG   TDPFFC H+KEG++F  LF+VNA++HKGIF+QH+++ 
Sbjct: 293  RVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSN 352

Query: 1187 EFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDNME 1366
            +FF LL  Q   VN  AL+HIY Y++PVFDA ++LK+ QEWLL   +  K     +D  E
Sbjct: 353  DFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAE 412

Query: 1367 VRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPI 1546
            +RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +NSN LN++ API
Sbjct: 413  IRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPI 472

Query: 1547 VREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSV 1726
            VR I++ S  QKT +F+RV++I+ +GF LCGR+YSFLAFSSNQLRDRSAWFFAED+  +V
Sbjct: 473  VRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINV 532

Query: 1727 HDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGK 1906
              I SWMGKF +KN+AK AARMGQCFSSTYAT+EVP  EV+ DLPDIKRN Y FSDGIG 
Sbjct: 533  MAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGM 592

Query: 1907 ITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHT 2086
            ITPDLA EVA+KL+   +PP AYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT
Sbjct: 593  ITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHT 652

Query: 2087 MLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTT 2266
            +LE+ SWTRFQPGFLNRQI+TLLSAL VPD VF +MQ+ MV KL+QMLV+ DVAFDVLT 
Sbjct: 653  ILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTA 712

Query: 2267 SCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDE 2446
            SCAEQGNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC DE
Sbjct: 713  SCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDE 772

Query: 2447 LGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRILE 2626
            LGVLEQGQCFIQ S+  LENCF+KHGSKFS TK+N QV+ GTV +AKNPCLHPGD+RILE
Sbjct: 773  LGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILE 832

Query: 2627 AVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYT 2806
            AVD PGL HL DCLVFPQKG+RPH++EASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y 
Sbjct: 833  AVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYD 892

Query: 2807 PAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAA 2986
             A+ K   R + HQDI++FF KN++NENLG ICNAHVV ADLS+YGA+D+ CL LAELAA
Sbjct: 893  AAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAA 952

Query: 2987 TAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDEDN---S 3157
            TAVDFPKTGK+V MP+ LKPK+YPDFM K +  SYKS+KILGRLYR+IKDA D+D+   S
Sbjct: 953  TAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAAS 1012

Query: 3158 SELISV-YQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHL 3334
            SE   V   D+P+D +LEV GA++Y+ +AW+ KCSYD QLN LL Q++V +E EVVTGH+
Sbjct: 1013 SERNFVPAADIPYDLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHV 1072

Query: 3335 CSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWY 3514
             SM K +SRKQG++KERLK++Y  L +++R+ FE +  DL QL D+ KN+ YE+KASAWY
Sbjct: 1073 WSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDLGQLDDDIKNMLYERKASAWY 1132

Query: 3515 CVTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIK-SRDGKVGTGKPIDSLA 3691
             VTYHP W+++S+ ++++DG  +   LSFAWI ADYL RIKI+ SR G V + KP++SLA
Sbjct: 1133 QVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLA 1192

Query: 3692 SYLYERM 3712
             YL +RM
Sbjct: 1193 KYLADRM 1199


>ref|XP_021597106.1| RNA-dependent RNA polymerase 6 [Manihot esculenta]
 gb|OAY27377.1| hypothetical protein MANES_16G121400 [Manihot esculenta]
          Length = 1199

 Score = 1489 bits (3856), Expect = 0.0
 Identities = 741/1203 (61%), Positives = 911/1203 (75%), Gaps = 5/1203 (0%)
 Frame = +2

Query: 119  SHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDISED 298
            + KD ++TQVS+ GF++    A+ L   LE  +  ++WRCRLK+S TPP+SYP+FDI+  
Sbjct: 6    NEKDTVVTQVSIGGFNS-RVKAKDLVAYLESEIG-LVWRCRLKTSWTPPESYPNFDITNT 63

Query: 299  MKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTSYRI 478
               ++     G +   PHAF+ FA+P  A    +AA RCEL L  +PL      +  Y +
Sbjct: 64   AGVQRTD---GHNKIEPHAFVHFASPQSATWAKNAAGRCELFLNDRPLKVSLGPENPYHM 120

Query: 479  N-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTGD 655
            N RRR+  PF   D   EIG+L S   FL  W     P S V+FL+DPFD +CK  FT D
Sbjct: 121  NQRRRTTTPFKLSDVHVEIGTL-SRNEFLVGWS---GPSSGVDFLVDPFDGTCKFCFTRD 176

Query: 656  VAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRTADD 835
             AF+   T E  VIRC+FKLEFL+RD+ E+K   D     L+  L L +AP V+YRTADD
Sbjct: 177  TAFSVKDTTEHAVIRCDFKLEFLVRDINEVKQYTDWNTSSLVILLQLVSAPFVWYRTADD 236

Query: 836  DIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRID 1015
            DI     +NLLDD+DPWIRTTDFTPSGAIGRCN YR+S+ PR G KL RA+ Y+KERR+ 
Sbjct: 237  DIEVLAPFNLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLNRALNYLKERRVQ 296

Query: 1016 GLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEFF 1195
                  P+   +E  +G   +D FFC H+KEG++F  +F+VNA++HKGIF+QH++++ FF
Sbjct: 297  LEFLKMPLKNSNEPEYGMPMSDAFFCIHHKEGIAFEVMFLVNAVMHKGIFNQHQLSDSFF 356

Query: 1196 GLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVRR 1375
             LL  Q + VN  AL+HI +YK+PVFDA   LK VQ+WLL   +L K P   +D +E+RR
Sbjct: 357  DLLRSQPLDVNLSALKHICSYKRPVFDAYCCLKAVQQWLLNNPKLFKSPKQLDDIVEIRR 416

Query: 1376 LVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVRE 1555
            L ITPT+AYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +N+N L +YVAPIVRE
Sbjct: 417  LAITPTRAYCLPPEVELSNRVLRKYKDIADRFLRVTFMDEGLQTINANTLTYYVAPIVRE 476

Query: 1556 ISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSVHDI 1735
            I++NS SQKT +F+RVK I+  GF LCGR+YSFLAFSSNQLRDRSAWFFAE+ + SVH I
Sbjct: 477  ITSNSFSQKTRVFKRVKGILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAENAEISVHQI 536

Query: 1736 TSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKITP 1915
             SWMG+F ++N+AK AARMGQCFSSTYATVEVPS EV+  LPDI+RN Y FSDGIG ITP
Sbjct: 537  RSWMGRFTNRNIAKCAARMGQCFSSTYATVEVPSGEVNLSLPDIERNGYIFSDGIGTITP 596

Query: 1916 DLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLE 2095
            DLA EVA+KL+L  NPP AYQIRYAG KGV+A WP   DGIRLSLR SM KFQS HT LE
Sbjct: 597  DLAKEVAEKLKLDANPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLE 656

Query: 2096 VVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCA 2275
            + SWTRFQPGFLNRQI+TLLS L+VPD++F  MQ  MV KLDQML++ DVAFDV+T SCA
Sbjct: 657  ICSWTRFQPGFLNRQIITLLSVLQVPDEIFWEMQFDMVSKLDQMLMDADVAFDVITASCA 716

Query: 2276 EQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDELGV 2455
            EQGN AA+MLSAGF PQ EPHL+ ML+CIR +QL  L  KARIFV  GRWLMGC DELGV
Sbjct: 717  EQGNTAAIMLSAGFKPQKEPHLQGMLTCIRAAQLWGLREKARIFVSSGRWLMGCLDELGV 776

Query: 2456 LEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRILEAVD 2635
            LEQGQCFIQ S+PSLENCFLKHGS+FS  K+N +VI GTV +AKNPCLHPGDVRILEAVD
Sbjct: 777  LEQGQCFIQVSNPSLENCFLKHGSRFSEIKKNLEVIKGTVVIAKNPCLHPGDVRILEAVD 836

Query: 2636 VPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAQ 2815
             P L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+RSW PM Y  A+
Sbjct: 837  APELHHLHDCLIFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWTPMQYNAAE 896

Query: 2816 PKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAV 2995
             K+  R +  QDIIDFF +++ NENLG ICNAHVV ADLS+YGA+DDNC+KLAELAATAV
Sbjct: 897  AKVLNRPVRSQDIIDFFARHMVNENLGAICNAHVVRADLSEYGALDDNCIKLAELAATAV 956

Query: 2996 DFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDED---NSSEL 3166
            DFPKTG +V MP  L+PK+YPDFM K D  SYKS KILGRLYR++KDA D++    SSEL
Sbjct: 957  DFPKTGMLVTMPPYLRPKMYPDFMGKEDYQSYKSTKILGRLYRQVKDACDDNVVAASSEL 1016

Query: 3167 ISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMG 3346
              V  D+P+D +LEV G+S+Y++EAW+ KCSYD QL  L+GQ++V +E EVVTGH+ SM 
Sbjct: 1017 NIVPGDIPYDRDLEVSGSSDYILEAWDQKCSYDGQLKGLMGQYKVKREEEVVTGHIWSMP 1076

Query: 3347 KHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTY 3526
            K+NSRK GE+KERLK +Y  L K++R+ FE +  D  QL+D+EKN+ YE+KASAWY V Y
Sbjct: 1077 KYNSRKNGELKERLKQSYSGLKKEFRQVFEKMDLDFEQLSDDEKNLLYERKASAWYQVAY 1136

Query: 3527 HPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRDGK-VGTGKPIDSLASYLY 3703
            HP W+++S+ ++  + +     LSFAWI ADYL RIKIK R  + V T KP++SL  YL 
Sbjct: 1137 HPTWIKKSLELQGPEADDSAAMLSFAWIAADYLARIKIKCRGIEGVDTSKPVNSLVKYLA 1196

Query: 3704 ERM 3712
            +R+
Sbjct: 1197 DRI 1199


>ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
          Length = 1200

 Score = 1489 bits (3854), Expect = 0.0
 Identities = 740/1208 (61%), Positives = 932/1208 (77%), Gaps = 7/1208 (0%)
 Frame = +2

Query: 110  SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 289
            +  S K+ ++TQVSV GF   + TA+ L++ L+  +  ++WRCRLK+S TPP+SYP+F+I
Sbjct: 3    AEGSAKETVVTQVSVGGF-GIHVTAKDLSEYLDRAIG-LVWRCRLKTSWTPPESYPNFEI 60

Query: 290  SEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTS 469
            ++  K ++           PHAF+ FA P  A   ++A+ RCEL L  K L         
Sbjct: 61   TDITKIERTEDY---RRVVPHAFVHFALPQSATWAMNASERCELFLNDKALKVSLGPKNP 117

Query: 470  YRINR-RRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLF 646
            + +N+ RR+  PF   D  FEIGSL S   F   W+    P S V+FL+DPFD +C+  F
Sbjct: 118  FTLNQQRRTTTPFKLSDVGFEIGSLVSHDEFFVGWR---GPPSGVDFLVDPFDGTCRFCF 174

Query: 647  TGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRT 826
            + + AF+   T E  VI+C FK+EFL+RD+ E+    +    VL+ QL+  +AP V+YRT
Sbjct: 175  SRNTAFSLKSTSEHAVIKCAFKVEFLVRDINEIIQYTETSCLVLLLQLA--SAPWVWYRT 232

Query: 827  ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 1006
            ADDDI   V ++LLDD+DPWIRTTDFT SGAIGRC+ YR+S+ PR G KL++A++Y+KER
Sbjct: 233  ADDDIEAWVPFDLLDDDDPWIRTTDFTGSGAIGRCHSYRVSIPPRHGSKLRKAVKYLKER 292

Query: 1007 RIDGLRPD---RPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHR 1177
            R++ L+ +   R I + DE +FG   +DPFFC H+KEG++F  LF+VNA++HKGIF+QH+
Sbjct: 293  RVEVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQ 352

Query: 1178 VTEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASED 1357
            ++ +FF LL  Q   VN  AL+HI  Y++PVF+A +RLK VQEWLL    L K P    D
Sbjct: 353  LSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYKRLKAVQEWLLKNPNLFKNPKQLGD 412

Query: 1358 NMEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYV 1537
             +E+RRLVITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q++NSNVLN+YV
Sbjct: 413  IVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYV 472

Query: 1538 APIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQ 1717
            APIVR+I++NS  QKT +F+RV++I+ +GF LCGR+YSFLAFS+NQLRD+SAWFFAE++ 
Sbjct: 473  APIVRDITSNSFHQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFAEERN 532

Query: 1718 TSVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDG 1897
             SV DI SWMGKF ++N+AK AARMGQCFSSTYAT+EVP  EV+ DLPDI+RN Y FSDG
Sbjct: 533  VSVLDIKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNFDLPDIERNGYVFSDG 592

Query: 1898 IGKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQS 2077
            IG ITPDLA EVA+KL+L  +PP AYQIRYAG KGV+A WPG  DG+ LSLR SM KFQS
Sbjct: 593  IGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVHLSLRPSMNKFQS 652

Query: 2078 EHTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDV 2257
             HT LE+ SWTRFQPGFLNRQI+TLLS L VPD VF +MQ++MV KL+QM VN DVAFDV
Sbjct: 653  NHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDV 712

Query: 2258 LTTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGC 2437
            LT SCA+QGNVAA+MLSAGF PQ EPHL+ ML+C+R +QL  L  KARIFVP GRWLMGC
Sbjct: 713  LTASCADQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGC 772

Query: 2438 FDELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVR 2617
             DELG+LEQGQCFIQ S+ SLE CF+KHG+KFS  K+N QV+ GTV +AKNPCLHPGDVR
Sbjct: 773  LDELGMLEQGQCFIQVSNSSLEKCFIKHGAKFSEAKKNLQVVKGTVVIAKNPCLHPGDVR 832

Query: 2618 ILEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPM 2797
            +LEAVDVPGL HL DCLVFPQKG+RPH++EASGSDLDGDLYFVTWDENLIPPS+RSW+PM
Sbjct: 833  VLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPM 892

Query: 2798 AYTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAE 2977
             Y  A+ KL  R + HQDII+FF KN+ NENLG ICNAHVVHADLS++GAMD+ CL LAE
Sbjct: 893  QYDAAEAKLLARPVNHQDIIEFFAKNMVNENLGAICNAHVVHADLSEHGAMDEKCLTLAE 952

Query: 2978 LAATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDED-- 3151
            LAATAVDFPKTGK+V MP+ LKPK+YPDFM K +  SYKSEKILGRLYR+IKDA DED  
Sbjct: 953  LAATAVDFPKTGKVVTMPSYLKPKVYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVA 1012

Query: 3152 NSSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGH 3331
             SSEL  V  D+P+D +LEV GAS+Y+ +AW+ KCSYD QLN LL Q++V +E E+VTGH
Sbjct: 1013 ASSELNPVPGDIPYDSDLEVVGASDYINDAWDQKCSYDGQLNGLLSQYKVKREEELVTGH 1072

Query: 3332 LCSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAW 3511
            + SM K++SRKQGE+K+RLK++Y +L K++R+ FE +  +  QL D EKN  YE+KASAW
Sbjct: 1073 IWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAW 1132

Query: 3512 YCVTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRD-GKVGTGKPIDSL 3688
            Y V YHP WV++S+ +++ DG      LSF WI ADYL RIKI+ R+ G V + KP++SL
Sbjct: 1133 YQVAYHPHWVKKSLELQDPDGAGTSVMLSFGWIAADYLARIKIRHRETGNVDSAKPVNSL 1192

Query: 3689 ASYLYERM 3712
            A YL +R+
Sbjct: 1193 AKYLADRI 1200


>ref|XP_021670990.1| RNA-dependent RNA polymerase 6-like [Hevea brasiliensis]
 ref|XP_021670991.1| RNA-dependent RNA polymerase 6-like [Hevea brasiliensis]
          Length = 1199

 Score = 1486 bits (3848), Expect = 0.0
 Identities = 743/1203 (61%), Positives = 910/1203 (75%), Gaps = 5/1203 (0%)
 Frame = +2

Query: 119  SHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDISED 298
            S KD ++TQVS  GFD  +  A+ L   LE  +  ++WRCRLK+S TPP+SYP+F+I+  
Sbjct: 6    SEKDTVVTQVSFGGFDI-HIKAKDLVAYLESEIG-LVWRCRLKTSWTPPESYPNFEITNT 63

Query: 299  MKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTSYRI 478
               ++     G     PHAF+ FA+P  A    +AA RCEL L  +PL      +  Y +
Sbjct: 64   ADVQRTE---GHKRIEPHAFVHFASPESATWAKNAAGRCELFLNDRPLKVSLGPENPYHM 120

Query: 479  N-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTGD 655
            N RRR+  PF   DAR EIG++     FL AW+    P S V+FL+DPFD +CK  FT D
Sbjct: 121  NQRRRTTTPFKLSDARIEIGTVCR-NEFLVAWR---GPSSGVDFLVDPFDGTCKFCFTRD 176

Query: 656  VAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRTADD 835
             AF+   T E  VIRC+FKLEFL+RD+ E+K   D     L+  L L +AP V YRTADD
Sbjct: 177  TAFSLKDTTEHAVIRCDFKLEFLVRDINEVKQYTDWSTSSLVILLQLASAPCVCYRTADD 236

Query: 836  DIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRID 1015
            DI   V ++LLDD+DPWIRTTDFT SGAIGRCN YR+S+ PR G KL RA+ Y+ ERR+ 
Sbjct: 237  DIEVLVPFDLLDDDDPWIRTTDFTASGAIGRCNSYRVSIPPRHGAKLNRALRYLGERRVQ 296

Query: 1016 GLRPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEFF 1195
                  P+ + +E ++G   +D FFC H+KEG++F  +F+VNA++HKGIF+QH++++ FF
Sbjct: 297  LEFLKLPLKISNEPDYGMPMSDTFFCIHHKEGIAFDVMFLVNAVMHKGIFNQHQLSDSFF 356

Query: 1196 GLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVRR 1375
             LL  Q V VN VAL+HI +YK+PV DA   LK VQ WLL   +L   P   +D +E+RR
Sbjct: 357  DLLRSQPVDVNLVALKHICSYKRPVIDASISLKAVQLWLLNNPKLFNRPKQLDDIVEIRR 416

Query: 1376 LVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVRE 1555
            L ITPTKAYCLPPE+EL+NRVLR+Y+D++DRFLRVTFMDEG+Q +N+N L +YVAPIVR+
Sbjct: 417  LAITPTKAYCLPPEVELSNRVLRKYKDIADRFLRVTFMDEGLQTINANTLTYYVAPIVRD 476

Query: 1556 ISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSVHDI 1735
            I++NS SQKT +F+RVK I+  GF LCGR+YSFLAFSSNQLRDRSAWFFAE+ + SV  I
Sbjct: 477  ITSNSFSQKTRVFKRVKGILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAENGEISVQQI 536

Query: 1736 TSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKITP 1915
             +WMG+F ++N+AK AARMGQCFSSTYATVEVPS E D  LPDI+RN Y FSDGIG ITP
Sbjct: 537  RNWMGRFTNRNIAKCAARMGQCFSSTYATVEVPSGEADLSLPDIERNGYIFSDGIGIITP 596

Query: 1916 DLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLE 2095
            DLA EVA+KL+L  NPP AYQIRYAG KGV+A WP   DGIRLSLR SM KF S HT LE
Sbjct: 597  DLAKEVAEKLKLDANPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMDKFHSNHTTLE 656

Query: 2096 VVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCA 2275
            + SWTRFQPGFLNRQI+TLLS L+VPD++F +MQ +MV KLDQML++ DVAFDV+T SCA
Sbjct: 657  ICSWTRFQPGFLNRQIITLLSVLKVPDEIFWKMQIAMVSKLDQMLMDADVAFDVITASCA 716

Query: 2276 EQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDELGV 2455
            EQGN AA+MLSAGF PQ EPHL+ ML+CIR +QL  L  KARIFV  GRWLMGC DELGV
Sbjct: 717  EQGNTAAIMLSAGFKPQKEPHLRGMLTCIRAAQLWGLREKARIFVHSGRWLMGCLDELGV 776

Query: 2456 LEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRILEAVD 2635
            LEQGQCFIQ S+PSLENCFLKHGS+FS  K+N QVI GTV +AKNPCLHPGD+RILEAVD
Sbjct: 777  LEQGQCFIQVSNPSLENCFLKHGSRFSEAKKNLQVIKGTVVIAKNPCLHPGDIRILEAVD 836

Query: 2636 VPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAQ 2815
             PGL HL DCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENL+PPS++SW PM Y  A+
Sbjct: 837  APGLHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLLPPSKKSWTPMQYDAAE 896

Query: 2816 PKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAV 2995
             KL  R +  QDIIDFF K++ NENLG ICNAHVVHADLS++GA+D+NC+KLAELAATAV
Sbjct: 897  AKLLHRPVRSQDIIDFFAKHMVNENLGAICNAHVVHADLSEHGALDENCIKLAELAATAV 956

Query: 2996 DFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASD---EDNSSEL 3166
            DFPKTGK+V MP SLKPK+YPDFM K D  SYKS KILGRLYR++KDA D   E  SSEL
Sbjct: 957  DFPKTGKLVTMPHSLKPKMYPDFMGKEDYQSYKSTKILGRLYRQVKDAYDDNVESASSEL 1016

Query: 3167 ISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLCSMG 3346
              V  D+P+D +LEV G+S+Y+++AW+ KCSYD QL  L+GQ++V +E EVVTGH+ SM 
Sbjct: 1017 NIVPGDIPYDRDLEVFGSSDYILDAWDQKCSYDGQLKGLMGQYKVRREEEVVTGHIWSMP 1076

Query: 3347 KHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYCVTY 3526
            K+NSRK GE+KERLK +Y  L K++R+ FE +  D  QL D+EKN+ YE+KASAWY V Y
Sbjct: 1077 KYNSRKNGELKERLKQSYSGLKKEFRQVFEKMDLDFEQLPDDEKNLLYERKASAWYQVAY 1136

Query: 3527 HPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSRDGK-VGTGKPIDSLASYLY 3703
            HP W+ +S+ ++  +       LSFAWI ADYL RIKIK R  + VGT KP++SL  YL 
Sbjct: 1137 HPSWINKSLELQGPEAADNAAMLSFAWIAADYLARIKIKCRGIEGVGTAKPVNSLMRYLA 1196

Query: 3704 ERM 3712
            +R+
Sbjct: 1197 DRI 1199


>ref|XP_010648660.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1483 bits (3840), Expect = 0.0
 Identities = 755/1210 (62%), Positives = 927/1210 (76%), Gaps = 9/1210 (0%)
 Frame = +2

Query: 110  SNASHKDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDI 289
            S  S KD ++TQ+S+ GFD    TA  L   LE  +  V  RCRLK+SSTPP+SYPDF+I
Sbjct: 3    SEGSEKDMVVTQISIGGFDQY-VTATELTYYLEDTIGSVD-RCRLKTSSTPPESYPDFEI 60

Query: 290  SEDMKKKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTS 469
             +  K ++           PHAF+ F +P  A   LDAA + EL L  KPL      +T 
Sbjct: 61   IDTAKIERTEDY---KKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETP 117

Query: 470  YRIN-RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLF 646
            + +N RRR+  PF FPD R EIG L S   + A W+    P S V+FL+DPFD +CK LF
Sbjct: 118  FHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWR---GPSSGVDFLVDPFDGTCKFLF 174

Query: 647  TGDVAFTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRT 826
            T D AF+  G  +  VI+CNFK+EFL+R++ E++   D    +L+ QLS  ++P VYYRT
Sbjct: 175  TKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLS--SSPFVYYRT 232

Query: 827  ADDDIHNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKER 1006
            ADDDI  +V ++LLDD+DPWIRTTDFT SGAIGRCN YRIS+ PR+G KLK+AM+Y++ R
Sbjct: 233  ADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRAR 292

Query: 1007 RIDGLR--PDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRV 1180
            R++ L   P   + V+DE +FG   +DPFFC  +KEG+ F  +F+VNA++HKGI +QH++
Sbjct: 293  RVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQL 352

Query: 1181 TEEFFGLLNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDN 1360
            +++FF LL  Q   +N  AL+HI +Y+ PVFDA +RLK+V +WLL   +L+K P   +D 
Sbjct: 353  SDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDI 412

Query: 1361 MEVRRLVITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVA 1540
            +EVRRLVITP+KAYCLPPE+EL+NRVLR Y+++SDRFLRVTFMDEGMQ +N+NVLN+YVA
Sbjct: 413  VEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVA 472

Query: 1541 PIVREISNNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQT 1720
            PIV+ I++NS  QKT +F+RVK I+  GF LCGRKYSFLAFSSNQLRDRSAWFFAEDK+T
Sbjct: 473  PIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKT 532

Query: 1721 SVHDITSWMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGI 1900
            SV  I SWMGKF ++NVAK AARMGQCFSSTYATVEVPS+EV  +LPDIKRN Y FSDGI
Sbjct: 533  SVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGI 591

Query: 1901 GKITPDLAMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSE 2080
            GKI PDLAMEVA+KL+L E  PSAYQIRYAG KGV+A WP ++DGIRLS R SM KF S+
Sbjct: 592  GKIVPDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSD 650

Query: 2081 HTMLEVVSWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVL 2260
            HT+LE+ SWTRFQPGFLNRQIVTLLSAL VPD +F +MQ+SM+ KL+QML + DVAFDVL
Sbjct: 651  HTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL 710

Query: 2261 TTSCAEQGNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCF 2440
              SCAEQGN AA+MLSAGF PQ EPHL+ ML+CIR +Q   L  KARIFVP GRWLMGC 
Sbjct: 711  IASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCL 770

Query: 2441 DELGVLEQGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRI 2620
            DELGVLEQGQCFIQ SSPSLENCFLKHGS+FS  K N +VI G VA+AKNPCLHPGDVRI
Sbjct: 771  DELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRI 829

Query: 2621 LEAVDVPGLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMA 2800
            LEAVD PGL HLVDCLVFPQKGDRPHS+EASGSDLDGDLYFVTW+E LIPPS++SW PM 
Sbjct: 830  LEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQ 889

Query: 2801 YTPAQPKLEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAEL 2980
            Y  A+ K   R +   DIIDFF KN+ NENLG ICNAHVVHAD S+YGA+D+ CL LAE 
Sbjct: 890  YDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAER 949

Query: 2981 AATAVDFPKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDED--N 3154
            AATAVDFPKTGK+V +P  LKPK+YPDFM K +  +Y+S KILG++YR+IKDA +ED   
Sbjct: 950  AATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSE 1009

Query: 3155 SSELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHL 3334
            SSE I     +PFDE+L + G+++++ +AW  KCSYD QLN LLGQ++V +E EVVTGH+
Sbjct: 1010 SSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHV 1069

Query: 3335 CSMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWY 3514
             SM K+ SRKQGE+ ERLK+AY +L K++R+ FE + +D  QLTD+EKN  YE+KASAWY
Sbjct: 1070 WSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWY 1129

Query: 3515 CVTYHPKWVERSVAMREAD---GERVPPRLSFAWIPADYLVRIKIKSR-DGKVGTGKPID 3682
             VTYHP WV++S+ ++  D   GERV   LSFAWI ADYL RIKI+ +  G V + KPI+
Sbjct: 1130 QVTYHPTWVKKSLELQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPIN 1187

Query: 3683 SLASYLYERM 3712
            SLA +L +R+
Sbjct: 1188 SLARFLVDRI 1197


>ref|XP_002515520.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ricinus communis]
 gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
          Length = 1203

 Score = 1480 bits (3832), Expect = 0.0
 Identities = 740/1207 (61%), Positives = 916/1207 (75%), Gaps = 11/1207 (0%)
 Frame = +2

Query: 125  KDNIITQVSVAGFDAANTTAQSLAQSLEHNLHCVIWRCRLKSSSTPPDSYPDFDISEDMK 304
            K+ ++TQVS  GFD  + TA+ L   L++ +  V WRCRLK+S TPP+SYP+F+I++   
Sbjct: 8    KETVVTQVSFGGFDK-DVTARDLVAYLDNEIGQV-WRCRLKTSWTPPESYPNFEITDTAV 65

Query: 305  KKKQPARPGPSSTAPHAFLQFATPAGAQRVLDAAARCELVLGSKPLIARASSDTSYRIN- 481
             ++  A        PHAF+ FA+P  A    +AA  CEL    +P+      +  + +N 
Sbjct: 66   IQRVDAY---RRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQ 122

Query: 482  RRRSIDPFTFPDARFEIGSLTSPTHFLAAWKLDPKPESSVNFLIDPFDNSCKLLFTGDVA 661
            RRR+  PF   D   EIG+L S   FL  W+    P S V+FL+DPFD  CK  FT D A
Sbjct: 123  RRRTTIPFKLSDVHVEIGTLVSRDEFLVGWR---GPPSGVDFLVDPFDGKCKFCFTRDTA 179

Query: 662  FTANGTREFEVIRCNFKLEFLLRDVMELKIGADGMQHVLMFQLSLGAAPLVYYRTADDDI 841
            F+  GT E  VIRC+FKLEFL+RD+ E+K   D    V++ QL+  +AP V+YRTADDDI
Sbjct: 180  FSFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLA--SAPSVWYRTADDDI 237

Query: 842  HNSVEWNLLDDEDPWIRTTDFTPSGAIGRCNCYRISMKPRFGPKLKRAMEYMKERRIDGL 1021
               V ++LLDD+DPWIRTTDFTPSGAIGRCN YR+S+ PR G KLKRA+ +++ERR+   
Sbjct: 238  EVLVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQED 297

Query: 1022 RPDRPIVVKDEANFGEIATDPFFCFHYKEGVSFANLFMVNALVHKGIFSQHRVTEEFFGL 1201
               RP+ V  E  +    +DPFFC H++EGV F  +F+VNA++HKGIF+QH++++ FF L
Sbjct: 298  CLRRPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDL 357

Query: 1202 LNGQSVLVNDVALRHIYAYKKPVFDACRRLKMVQEWLLGFSRLIKIPTASEDNMEVRRLV 1381
            L  Q + VN  ALRHI +YK PVFDA +RLK VQ+WLL   +L +     +D +E+RRL 
Sbjct: 358  LRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLA 417

Query: 1382 ITPTKAYCLPPEIELANRVLRRYRDMSDRFLRVTFMDEGMQQLNSNVLNFYVAPIVREIS 1561
            ITPT+AYCLPPE+EL+NRVLRRY+D++D+FLRVTFMDEG+Q +N+N L +Y APIVR+I+
Sbjct: 418  ITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDIT 477

Query: 1562 NNSPSQKTAMFRRVKNIVNKGFNLCGRKYSFLAFSSNQLRDRSAWFFAEDKQTSVHDITS 1741
            +NS SQKT +F+RVK+I+  GF LCGRKYSFLAFSSNQLRDRSAWFFAED +TSV  I +
Sbjct: 478  SNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRN 537

Query: 1742 WMGKFQDKNVAKYAARMGQCFSSTYATVEVPSYEVDPDLPDIKRNTYCFSDGIGKITPDL 1921
            WMGKF ++N+AK AARMGQCFSSTYATVEVPS E   DLPDI+RN Y FSDGIG ITPDL
Sbjct: 538  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDL 597

Query: 1922 AMEVAKKLQLTENPPSAYQIRYAGYKGVIAVWPGNDDGIRLSLRESMYKFQSEHTMLEVV 2101
            A EVA+KL+L  NPP AYQIRYAG KGV+A WP + DGIRLSLR SM KF S HT LE+ 
Sbjct: 598  AKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEIC 657

Query: 2102 SWTRFQPGFLNRQIVTLLSALEVPDDVFARMQDSMVCKLDQMLVNPDVAFDVLTTSCAEQ 2281
            SWTRFQPGFLNRQI+TLLS L+VPD++F +MQ  MV KL+QM ++ DVAFDV+T SCAEQ
Sbjct: 658  SWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQ 717

Query: 2282 GNVAAMMLSAGFDPQLEPHLKAMLSCIRLSQLKDLSSKARIFVPKGRWLMGCFDELGVLE 2461
            GN AA+MLSAGF+P+ EPHL  ML+CIR +QL  L  K RIFVP GRWLMGC DELGVLE
Sbjct: 718  GNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLE 777

Query: 2462 QGQCFIQASSPSLENCFLKHGSKFSGTKENKQVIVGTVALAKNPCLHPGDVRILEAVDVP 2641
             GQCFIQ S+PSLE+CF KHGS+FS +K+  QV+ GTV +AKNPCLHPGD+RILEAVD P
Sbjct: 778  HGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAP 837

Query: 2642 GLRHLVDCLVFPQKGDRPHSDEASGSDLDGDLYFVTWDENLIPPSRRSWMPMAYTPAQPK 2821
             L HL DCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+RSW+PM Y  A+ K
Sbjct: 838  ELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAK 897

Query: 2822 LEPRRIVHQDIIDFFVKNISNENLGVICNAHVVHADLSDYGAMDDNCLKLAELAATAVDF 3001
               R + HQDIIDFF KN+ NENLG ICNAHVVHADLS+YGA+D+NC+KLAELAATAVDF
Sbjct: 898  QLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDF 957

Query: 3002 PKTGKMVHMPASLKPKLYPDFMDKYDQHSYKSEKILGRLYRKIKDASDEDN--------S 3157
            PKTGK+V MP  LKPKLYPDFM K D  SY S KILGRLYR++KD  ++D+        S
Sbjct: 958  PKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATS 1017

Query: 3158 SELISVYQDLPFDENLEVHGASEYLVEAWETKCSYDRQLNALLGQFRVDKEGEVVTGHLC 3337
            SEL  V  D+P+D++LEV G+S+Y+++AW+ KCSYD QL  LL Q++V +E EVVTGH+ 
Sbjct: 1018 SELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIW 1077

Query: 3338 SMGKHNSRKQGEIKERLKNAYYALNKKYRRAFEDVGTDLLQLTDEEKNVRYEKKASAWYC 3517
            SM K NSRKQGE+KERLK +Y++L K++R+ FE + +D  QLT++EKN+ YE+KASAWY 
Sbjct: 1078 SMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQ 1137

Query: 3518 VTYHPKWVERSVAMREADGERVPPRLSFAWIPADYLVRIKIKSR--DGKVGTGKPIDSLA 3691
            V YHPKWV +S+ ++E D       LSFAWI ADYL RIKI+ R  DG V T KP++SL 
Sbjct: 1138 VAYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDG-VDTSKPVNSLV 1196

Query: 3692 SYLYERM 3712
             YL +R+
Sbjct: 1197 KYLADRI 1203