BLASTX nr result

ID: Ophiopogon26_contig00014218 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00014218
         (454 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020260333.1| protein CIA1 [Asparagus officinalis] >gi|115...    45   1e-07
gb|OVA06012.1| WD40 repeat [Macleaya cordata]                          49   2e-06

>ref|XP_020260333.1| protein CIA1 [Asparagus officinalis]
 ref|XP_020260334.1| protein CIA1 [Asparagus officinalis]
          Length = 353

 Score = 45.1 bits (105), Expect(2) = 1e-07
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = -1

Query: 193 SLAWNSTSGVGGVLAMLTSCIEDKNVRIWEQ 101
           SLAWN  +G G + AML SC  DK VRIWEQ
Sbjct: 27  SLAWNPVTGAGVIPAMLASCSGDKTVRIWEQ 57



 Score = 38.1 bits (87), Expect(2) = 1e-07
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -3

Query: 278 LEMDLLDGNFDLEGIQ*LEGHINIVLTL 195
           +EMD LDGNFDL+ IQ LEGH + V +L
Sbjct: 1   MEMDFLDGNFDLKEIQQLEGHTDRVWSL 28


>gb|OVA06012.1| WD40 repeat [Macleaya cordata]
          Length = 349

 Score = 48.9 bits (115), Expect(2) = 2e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -1

Query: 193 SLAWNSTSGVGGVLAMLTSCIEDKNVRIWEQS 98
           SLAWN T+GV G+ AML SC  DK VRIW+Q+
Sbjct: 25  SLAWNPTTGVSGIPAMLASCSGDKTVRIWQQN 56



 Score = 30.0 bits (66), Expect(2) = 2e-06
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 272 MDLLDGNFDLEGIQ*LEGHINIVLTL 195
           MDL +GN +L+ IQ LEGH + V +L
Sbjct: 1   MDLFEGNLELKEIQKLEGHTDRVWSL 26


Top