BLASTX nr result
ID: Ophiopogon26_contig00009155
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00009155
(682 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020592154.1| cleavage and polyadenylation specificity fac... 67 4e-09
ref|XP_020083140.1| cleavage and polyadenylation specificity fac... 67 4e-09
gb|PKU79029.1| Cleavage and polyadenylation specificity factor s... 67 5e-09
ref|XP_020700357.1| cleavage and polyadenylation specificity fac... 67 5e-09
ref|XP_009391419.1| PREDICTED: cleavage and polyadenylation spec... 65 1e-08
ref|XP_006828470.1| cleavage and polyadenylation specificity fac... 65 2e-08
gb|PIN21736.1| putative cleavage and polyadenylation specificity... 63 9e-08
ref|XP_023922515.1| cleavage and polyadenylation specificity fac... 60 1e-06
ref|XP_011463169.1| PREDICTED: cleavage and polyadenylation spec... 59 1e-06
gb|PKA52369.1| Cleavage and polyadenylation specificity factor s... 59 2e-06
gb|OVA12168.1| Beta-lactamase-like [Macleaya cordata] 58 4e-06
gb|PLY75759.1| hypothetical protein LSAT_3X53521 [Lactuca sativa] 57 8e-06
ref|XP_023731342.1| cleavage and polyadenylation specificity fac... 57 9e-06
>ref|XP_020592154.1| cleavage and polyadenylation specificity factor subunit 3-II
[Phalaenopsis equestris]
Length = 653
Score = 67.0 bits (162), Expect = 4e-09
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +2
Query: 47 EIDCSHIRSTSVQFQLNSLQVQICSNRQCPYRTKKDSA-IRSTVFFCCGWSFADEALARK 223
+I+CS ++ QL S Q +IC N+ C YR +++ ++ FFCC WSF D+ LARK
Sbjct: 570 KINCSFLQKDLEHLQLKSFQSRICLNKLCSYRIEQEGRDCKTETFFCCSWSFRDDNLARK 629
Query: 224 VLSIMSMLQLDFT 262
+L++M ++LD +
Sbjct: 630 ILNVMREVELDMS 642
>ref|XP_020083140.1| cleavage and polyadenylation specificity factor subunit 3-II
[Ananas comosus]
Length = 691
Score = 67.0 bits (162), Expect = 4e-09
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +2
Query: 50 IDCSHIRSTSVQFQLNSLQVQICSNRQCPYRTKKDSAIRSTV-FFCCGWSFADEALARKV 226
+ C +I S S QL+SL+++ICSN CP+RT ++ S+V +FCC WS DE LA K
Sbjct: 605 VKCKYIESFSDHLQLDSLRIRICSNEDCPFRTNQNKYCSSSVIYFCCSWSMHDENLASKC 664
Query: 227 LSIMSML 247
L I++ L
Sbjct: 665 LEIVNNL 671
>gb|PKU79029.1| Cleavage and polyadenylation specificity factor subunit 3-II
[Dendrobium catenatum]
Length = 672
Score = 66.6 bits (161), Expect = 5e-09
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +2
Query: 47 EIDCSHIRSTSVQFQLNSLQVQICSNRQCPYRTKK-DSAIRSTVFFCCGWSFADEALARK 223
+IDC +I+ T +L S Q +IC N C YR ++ S ++ FFCC WS +D+ LARK
Sbjct: 584 KIDCCNIQKTFDHLRLKSFQARICLNDLCSYRIQQGQSDCKTETFFCCSWSLSDDILARK 643
Query: 224 VLSIMSMLQLDFT 262
+L IM ++LD +
Sbjct: 644 LLGIMREVELDIS 656
>ref|XP_020700357.1| cleavage and polyadenylation specificity factor subunit 3-II
[Dendrobium catenatum]
Length = 707
Score = 66.6 bits (161), Expect = 5e-09
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +2
Query: 47 EIDCSHIRSTSVQFQLNSLQVQICSNRQCPYRTKK-DSAIRSTVFFCCGWSFADEALARK 223
+IDC +I+ T +L S Q +IC N C YR ++ S ++ FFCC WS +D+ LARK
Sbjct: 619 KIDCCNIQKTFDHLRLKSFQARICLNDLCSYRIQQGQSDCKTETFFCCSWSLSDDILARK 678
Query: 224 VLSIMSMLQLDFT 262
+L IM ++LD +
Sbjct: 679 LLGIMREVELDIS 691
>ref|XP_009391419.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Musa acuminata subsp. malaccensis]
Length = 663
Score = 65.5 bits (158), Expect = 1e-08
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = +2
Query: 53 DCSHIRSTSVQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCGWSFADEALARKVLS 232
+C I+ S QL++ V +CSN C YR K++ S V+FCC WS D+ LAR++L
Sbjct: 595 ECKDIQIASDSLQLHTFHVCVCSNEHCSYRKKENGVGESVVYFCCSWSPCDDRLARELLQ 654
Query: 233 IMSMLQL 253
IM L L
Sbjct: 655 IMGQLAL 661
>ref|XP_006828470.1| cleavage and polyadenylation specificity factor subunit 3-II
[Amborella trichopoda]
gb|ERM95886.1| hypothetical protein AMTR_s00060p00141700 [Amborella trichopoda]
Length = 716
Score = 64.7 bits (156), Expect = 2e-08
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = +2
Query: 89 QLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCGWSFADEALARKVLSIMSMLQL 253
QLNS+ + +C N CPYRT+ +FFCC WS+ DE LAR+V+S M L L
Sbjct: 659 QLNSMCIHVCGNEDCPYRTEPAKEYDRALFFCCSWSWVDEKLARRVVSFMKDLDL 713
>gb|PIN21736.1| putative cleavage and polyadenylation specificity factor (CPSF
subunit) [Handroanthus impetiginosus]
Length = 625
Score = 62.8 bits (151), Expect = 9e-08
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 HIRSTSVQFQLNSLQVQICSNRQCPYRTKKD-SAIRSTVFFCCGWSFADEALARKVLSIM 238
HI ++ Q+ SL + +CS +CP+RT ++ TV FCC WS ADE LAR+V+S++
Sbjct: 558 HIHNSQEHIQIRSLILSLCSKEECPHRTSLSLHSVPHTVHFCCTWSLADEELARRVISVI 617
Query: 239 SMLQL 253
+ L L
Sbjct: 618 NNLDL 622
>ref|XP_023922515.1| cleavage and polyadenylation specificity factor subunit 3-II
[Quercus suber]
gb|POE97861.1| cleavage and polyadenylation specificity factor subunit 3-ii
[Quercus suber]
Length = 646
Score = 59.7 bits (143), Expect = 1e-06
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = +2
Query: 47 EIDCSHIRSTSVQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCGWSFADEALARKV 226
EI +I+ Q+ S + +C N +CPYR VFFCC WS ADE LA K+
Sbjct: 575 EISSGNIQDFGEHLQVESFDISVCLNDKCPYRIIDSQNKSEAVFFCCTWSVADEKLAWKI 634
Query: 227 LSIM 238
+SIM
Sbjct: 635 ISIM 638
>ref|XP_011463169.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Fragaria vesca subsp. vesca]
Length = 636
Score = 59.3 bits (142), Expect = 1e-06
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 47 EIDCSHIRSTSVQFQLNSLQVQICSNRQCPYRTKKDSAI--RSTVFFCCGWSFADEALAR 220
E+ +I+ QL S+ V ICSN CPYR + A R VFFCC W DE LA
Sbjct: 564 ELSEGNIQHFGDHLQLESIHVSICSNNDCPYRLSDNGAEEQREPVFFCCSWEMEDEKLAW 623
Query: 221 KVLSI 235
KV+SI
Sbjct: 624 KVISI 628
>gb|PKA52369.1| Cleavage and polyadenylation specificity factor subunit 3-II
[Apostasia shenzhenica]
Length = 540
Score = 58.9 bits (141), Expect = 2e-06
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 47 EIDCSHIRSTSVQFQLNSLQVQICSNRQCPYRTK-KDSAIRSTVFFCCGWSFADEALARK 223
+ID +I + +++S + ++C N CPYR K +D + +F CC WS D+ LARK
Sbjct: 463 DIDGRYINKACERLEVDSFRARMCLNENCPYRIKLRDDEDITAIFLCCSWSLTDDMLARK 522
Query: 224 VLSIMSMLQLD 256
+L M ++LD
Sbjct: 523 LLCRMRGMELD 533
>gb|OVA12168.1| Beta-lactamase-like [Macleaya cordata]
Length = 680
Score = 58.2 bits (139), Expect = 4e-06
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = +2
Query: 89 QLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCGWSFADEALARKVLSIMSMLQ 250
QL S V IC CPY+ K+ S S V FCC WS ADE LA +V+S+M+ L+
Sbjct: 620 QLESFHVSICRGNNCPYKIKEFSDGNSIVSFCCKWSLADEKLAWRVISVMNDLE 673
>gb|PLY75759.1| hypothetical protein LSAT_3X53521 [Lactuca sativa]
Length = 630
Score = 57.0 bits (136), Expect = 8e-06
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 IRSTSVQFQLNSLQVQICSNRQCPYRTKKD--SAIRSTVFFCCGWSFADEALARKVLSIM 238
+R ++NS +V++C N CP+R +D S VFFCC WS D+++A +V+S+M
Sbjct: 566 VRDCKGSLEVNSFRVRVCKNDDCPHRVDRDELSERLECVFFCCNWSILDKSIAWRVISVM 625
Query: 239 SMLQL 253
+ L
Sbjct: 626 KNMDL 630
>ref|XP_023731342.1| cleavage and polyadenylation specificity factor subunit 3-II
[Lactuca sativa]
Length = 1006
Score = 57.0 bits (136), Expect = 9e-06
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +2
Query: 65 IRSTSVQFQLNSLQVQICSNRQCPYRTKKD--SAIRSTVFFCCGWSFADEALARKVLSIM 238
+R ++NS +V++C N CP+R +D S VFFCC WS D+++A +V+S+M
Sbjct: 566 VRDCKGSLEVNSFRVRVCKNDDCPHRVDRDELSERLECVFFCCNWSILDKSIAWRVISVM 625
Query: 239 SMLQL 253
+ L
Sbjct: 626 KNMDL 630