BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon26_contig00003116
         (1032 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020257000.1| DNA-directed RNA polymerase I subunit rpa49 ...   325   e-130
gb|ONK75163.1| uncharacterized protein A4U43_C03F14010 [Asparagu...   325   e-130
ref|XP_009386771.1| PREDICTED: uncharacterized protein LOC103973...   197   1e-76
ref|XP_010937236.1| PREDICTED: DNA-directed RNA polymerase I sub...   192   1e-75
ref|XP_008783442.1| PREDICTED: DNA-directed RNA polymerase I sub...   190   5e-75
gb|OAY81587.1| DNA-directed RNA polymerase I subunit rpa49 [Anan...   190   3e-74
ref|XP_020100940.1| DNA-directed RNA polymerase I subunit rpa49 ...   188   2e-73
ref|XP_020587407.1| DNA-directed RNA polymerase I subunit rpa49 ...   180   9e-72
ref|XP_020673334.1| DNA-directed RNA polymerase I subunit rpa49 ...   174   8e-70
ref|XP_020673335.1| DNA-directed RNA polymerase I subunit rpa49 ...   158   4e-65
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   147   3e-58
gb|KMZ63406.1| DNA-directed RNA polymerase I subunit rpa49 [Zost...   158   6e-58
gb|OVA10366.1| RNA polymerase I associated factor [Macleaya cord...   138   1e-57
emb|CBI35920.3| unnamed protein product, partial [Vitis vinifera]     147   1e-57
ref|XP_010273794.1| PREDICTED: DNA-directed RNA polymerase I sub...   147   2e-57
ref|XP_022736064.1| DNA-directed RNA polymerase I subunit RPA49 ...   139   1e-54
ref|XP_006426597.1| DNA-directed RNA polymerase I subunit RPA49 ...   141   2e-54
ref|XP_006465974.1| PREDICTED: DNA-directed RNA polymerase I sub...   141   3e-54
ref|XP_007039490.2| PREDICTED: DNA-directed RNA polymerase I sub...   137   2e-53
gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, puta...   137   2e-53

>ref|XP_020257000.1| DNA-directed RNA polymerase I subunit rpa49 [Asparagus officinalis]
          Length = 434

 Score =  325 bits (834), Expect(2) = e-130
 Identities = 166/227 (73%), Positives = 188/227 (82%), Gaps = 3/227 (1%)
 Frame = +3

Query: 360  EGN--RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDT 533
            +GN  R+ISDLTSLYGTK+QR MDKK+RLL +QTN+PSARE L DEML  D N+EAL+DT
Sbjct: 153  DGNTRRKISDLTSLYGTKKQRNMDKKLRLLAQQTNDPSARENLPDEMLNVDMNDEALKDT 212

Query: 534  KATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYP 713
            KAT GPNIPPHDLSAVTPE AYLLDEII KGERDYLFDIL L +SGIGE   +WEENYYP
Sbjct: 213  KATIGPNIPPHDLSAVTPEKAYLLDEIIQKGERDYLFDILDLLNSGIGEKPKYWEENYYP 272

Query: 714  CFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRR-KSQTALYGDAINKYK 890
             FVVNRI               AFILSYITHLVNFWKLAAS+RR KSQ+++ GDAINKYK
Sbjct: 273  SFVVNRIPKLKEVQNEEEKKKLAFILSYITHLVNFWKLAASNRRSKSQSSISGDAINKYK 332

Query: 891  IPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            IPR++YQKF +LF+DP+S VL + KKELVIGYILVLTLFAD+FS+SP
Sbjct: 333  IPRIVYQKFEQLFIDPASKVLSSYKKELVIGYILVLTLFADKFSSSP 379



 Score =  171 bits (433), Expect(2) = e-130
 Identities = 80/97 (82%), Positives = 90/97 (92%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 223
           VE S L D PDRIAPVVGYFSSGYNPCDS++PPEVRV R++ HRSSRLDLVV+P+ S+VE
Sbjct: 28  VETSYLADNPDRIAPVVGYFSSGYNPCDSQEPPEVRVLRNRNHRSSRLDLVVKPKESSVE 87

Query: 224 FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           FVG+SYEGEAAVHQPCHYALG+LDKD+QTLKVVPIAA
Sbjct: 88  FVGRSYEGEAAVHQPCHYALGILDKDSQTLKVVPIAA 124


>gb|ONK75163.1| uncharacterized protein A4U43_C03F14010 [Asparagus officinalis]
          Length = 403

 Score =  325 bits (834), Expect(2) = e-130
 Identities = 166/227 (73%), Positives = 188/227 (82%), Gaps = 3/227 (1%)
 Frame = +3

Query: 360  EGN--RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDT 533
            +GN  R+ISDLTSLYGTK+QR MDKK+RLL +QTN+PSARE L DEML  D N+EAL+DT
Sbjct: 153  DGNTRRKISDLTSLYGTKKQRNMDKKLRLLAQQTNDPSARENLPDEMLNVDMNDEALKDT 212

Query: 534  KATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYP 713
            KAT GPNIPPHDLSAVTPE AYLLDEII KGERDYLFDIL L +SGIGE   +WEENYYP
Sbjct: 213  KATIGPNIPPHDLSAVTPEKAYLLDEIIQKGERDYLFDILDLLNSGIGEKPKYWEENYYP 272

Query: 714  CFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRR-KSQTALYGDAINKYK 890
             FVVNRI               AFILSYITHLVNFWKLAAS+RR KSQ+++ GDAINKYK
Sbjct: 273  SFVVNRIPKLKEVQNEEEKKKLAFILSYITHLVNFWKLAASNRRSKSQSSISGDAINKYK 332

Query: 891  IPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            IPR++YQKF +LF+DP+S VL + KKELVIGYILVLTLFAD+FS+SP
Sbjct: 333  IPRIVYQKFEQLFIDPASKVLSSYKKELVIGYILVLTLFADKFSSSP 379



 Score =  171 bits (433), Expect(2) = e-130
 Identities = 80/97 (82%), Positives = 90/97 (92%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 223
           VE S L D PDRIAPVVGYFSSGYNPCDS++PPEVRV R++ HRSSRLDLVV+P+ S+VE
Sbjct: 28  VETSYLADNPDRIAPVVGYFSSGYNPCDSQEPPEVRVLRNRNHRSSRLDLVVKPKESSVE 87

Query: 224 FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           FVG+SYEGEAAVHQPCHYALG+LDKD+QTLKVVPIAA
Sbjct: 88  FVGRSYEGEAAVHQPCHYALGILDKDSQTLKVVPIAA 124


>ref|XP_009386771.1| PREDICTED: uncharacterized protein LOC103973833 [Musa acuminata
            subsp. malaccensis]
          Length = 424

 Score =  197 bits (501), Expect(2) = 1e-76
 Identities = 111/221 (50%), Positives = 140/221 (63%)
 Frame = +3

Query: 369  RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTG 548
            R++ DLTSLYGTK+ R  D K R L++Q N+ SARE L++  L  D  ++ LEDT  TT 
Sbjct: 155  RKMVDLTSLYGTKKDRDKDNKWRSLIQQRNDSSAREHLENINLNADGESQVLEDTLETTT 214

Query: 549  PNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVN 728
             NIPP+D SA TPE AYLLDEII KGER +L DIL    SG     T      YP FV N
Sbjct: 215  RNIPPYDASADTPEKAYLLDEIIPKGERVHLLDILDDLHSG-----TDIPSKSYPSFVFN 269

Query: 729  RIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIY 908
            R+H              A I SYI+HL NFW+ +  SR   ++A +  + +  KIPR++Y
Sbjct: 270  RMHKLREIQDEKEREKLACIFSYISHLQNFWERSRPSRH-FKSASHDKSTDHLKIPRIVY 328

Query: 909  QKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            QK +++FLD  SNVL T+K EL+IG+ILVLTLFAD F T P
Sbjct: 329  QKLLRMFLDRESNVLSTEKNELLIGHILVLTLFADCFQTDP 369



 Score =  119 bits (298), Expect(2) = 1e-76
 Identities = 59/97 (60%), Positives = 76/97 (78%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 223
           VEM AL++  DR+APVVGYF SGY+P      P ++VFR+K+ R +RL+LVV P G+ V+
Sbjct: 24  VEMEALSEAADRVAPVVGYFPSGYDPRGEGADPSIKVFRNKK-RPNRLELVVSPSGTGVD 82

Query: 224 FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           FVGKSY GEAA  Q C YALGVLDK++QTL++VPIA+
Sbjct: 83  FVGKSYAGEAAGAQICSYALGVLDKESQTLRIVPIAS 119


>ref|XP_010937236.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Elaeis
            guineensis]
          Length = 425

 Score =  192 bits (488), Expect(2) = 1e-75
 Identities = 112/227 (49%), Positives = 140/227 (61%), Gaps = 6/227 (2%)
 Frame = +3

Query: 369  RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEML---KTDTNNEALEDTKA 539
            R+I+DLT+LYGTK+ R  D + R L +Q N+PSAREQL  E       D +NE+ ED K 
Sbjct: 155  RKIADLTNLYGTKKDRDKDNRWRSLNQQRNDPSAREQLASENPGGDDDDIDNESHEDVKE 214

Query: 540  TTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEE---NYY 710
               PNIPPHD SA T E AYLLDEII K ER YL DIL        EN  + E+     Y
Sbjct: 215  AAVPNIPPHDRSANTSEKAYLLDEIIPKAERPYLLDIL--------ENLQYGEDLASKSY 266

Query: 711  PCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYK 890
            P FV NRIH              A ILSYITHL  FW+    S+ K++    G   +  K
Sbjct: 267  PTFVYNRIHKLREIQDDKEKEKLACILSYITHLHTFWERIRFSKHKAK--FLGMTADAPK 324

Query: 891  IPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            IPR+IYQK V++F++P S+++  +KKEL+IGYILVLTLFAD+F + P
Sbjct: 325  IPRIIYQKVVRMFVNPESDIVSMEKKELLIGYILVLTLFADKFRSDP 371



 Score =  120 bits (302), Expect(2) = 1e-75
 Identities = 66/115 (57%), Positives = 80/115 (69%), Gaps = 4/115 (3%)
 Frame = +2

Query: 2   QSRTEXXXXXXXXXVEMSALTDTPDRIAPVVGYFSSGYNPCDSEQP----PEVRVFRHKQ 169
           + RTE         VEM  L++T DRIAP+VGYF SGY+P ++       P VRVFR++ 
Sbjct: 6   EGRTESKKKRKRVEVEMEVLSETTDRIAPIVGYFPSGYDPHNAASAAAGGPSVRVFRNQM 65

Query: 170 HRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           + SSRL+LVV P+ SNVEFVG SY GEAA  Q C Y LGVLDK+T TLK+VPIAA
Sbjct: 66  Y-SSRLELVVSPRDSNVEFVGTSYSGEAAGPQLCTYTLGVLDKETHTLKIVPIAA 119


>ref|XP_008783442.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Phoenix
            dactylifera]
          Length = 430

 Score =  190 bits (483), Expect(2) = 5e-75
 Identities = 110/229 (48%), Positives = 140/229 (61%), Gaps = 8/229 (3%)
 Frame = +3

Query: 369  RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEML-----KTDTNNEALEDT 533
            R+I+DLT+LYGTK+ R  D + RLL +Q N+PS +EQL +E L       D +NEA ED 
Sbjct: 158  RKIADLTNLYGTKKDRDKDNRWRLLNQQRNDPSTQEQLANENLGGGGDDDDVDNEAPEDV 217

Query: 534  KATTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEE---N 704
            K    PNIPPHD SA TPE AYLLDEI+ + ER YL DIL        EN  + E+    
Sbjct: 218  KEAAVPNIPPHDRSANTPEKAYLLDEIMPRAERAYLLDIL--------ENLQYGEDLASK 269

Query: 705  YYPCFVVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINK 884
             YP FV NRIH              A ILSYITHL  FW     S+ K++    G     
Sbjct: 270  SYPAFVYNRIHKLREVQDDKEKEKLACILSYITHLHAFWGRIRFSKHKAR--FVGMTAGG 327

Query: 885  YKIPRVIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
             KIPR+IYQK +++F++P S+++  +KKEL+IGYILVLTLF D+F + P
Sbjct: 328  PKIPRIIYQKLLRMFVNPDSDLVSMEKKELLIGYILVLTLFVDKFHSDP 376



 Score =  120 bits (302), Expect(2) = 5e-75
 Identities = 66/115 (57%), Positives = 81/115 (70%), Gaps = 4/115 (3%)
 Frame = +2

Query: 2   QSRTEXXXXXXXXXVEMSALTDTPDRIAPVVGYFSSGYNPCDSE----QPPEVRVFRHKQ 169
           + RT          VEM  L++T DRIAP+VGYF SGY+P ++       P VRVFR+++
Sbjct: 9   EGRTASTKKRKRVEVEMEVLSETTDRIAPIVGYFPSGYDPHNAAFAAAGSPSVRVFRNQR 68

Query: 170 HRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           H SSRL+LVV P+ SNVEFVG SY GEAA  Q C Y LGVLDK+TQTLK++PIAA
Sbjct: 69  H-SSRLELVVSPRESNVEFVGTSYSGEAAGPQLCTYTLGVLDKETQTLKILPIAA 122


>gb|OAY81587.1| DNA-directed RNA polymerase I subunit rpa49 [Ananas comosus]
          Length = 430

 Score =  190 bits (483), Expect(2) = 3e-74
 Identities = 105/221 (47%), Positives = 136/221 (61%)
 Frame = +3

Query: 369  RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTG 548
            R+I DLTS+YGTK+ R  DKK   L +Q N+PSA E L++E    D +N A +    +T 
Sbjct: 164  RKIQDLTSMYGTKKDRDKDKKWMSLNQQRNDPSAYEHLENEKTDADVDNNAADQETESTP 223

Query: 549  PNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVN 728
             NIPPH+ SA TPE AYL+DEII KGER YL DIL    SG+       +   YP FV N
Sbjct: 224  RNIPPHNPSADTPERAYLIDEIIPKGERAYLLDILEALHSGVD-----LDLKPYPSFVSN 278

Query: 729  RIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIY 908
            R++              A +LSYITHL +FW+  +SS RKS+   +    +  KIPR+ Y
Sbjct: 279  RLYKLRELQDEEEKEKLACMLSYITHLQSFWERLSSSGRKSKH--HSKPADHSKIPRITY 336

Query: 909  QKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            Q+  ++F+DP S++L T K EL+IGYILVLTLF D F T P
Sbjct: 337  QRLQRMFVDPESHLLSTQKNELLIGYILVLTLFVDNFKTDP 377



 Score =  118 bits (295), Expect(2) = 3e-74
 Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 8/105 (7%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCD--------SEQPPEVRVFRHKQHRSSRLDLVV 199
           V M AL ++ DRIAPVVGYF SGY+P          +   P VRVFR+K+ R++RL+LVV
Sbjct: 25  VSMEALAESGDRIAPVVGYFPSGYDPLGGGAADPAAAADDPSVRVFRNKR-RANRLELVV 83

Query: 200 RPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
            P+GS VEFVG+SY GEAA  Q C YALGVLDK TQTLK+VPIAA
Sbjct: 84  SPRGSAVEFVGRSYAGEAAAPQLCTYALGVLDKATQTLKIVPIAA 128


>ref|XP_020100940.1| DNA-directed RNA polymerase I subunit rpa49 [Ananas comosus]
          Length = 430

 Score =  188 bits (477), Expect(2) = 2e-73
 Identities = 105/221 (47%), Positives = 135/221 (61%)
 Frame = +3

Query: 369  RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTG 548
            R+I DLTSLYGTK+ R  DKK   L +Q N+PSA E L++E    D +N A +    +T 
Sbjct: 164  RKIQDLTSLYGTKKDRDKDKKWMSLNQQRNDPSAYEHLENEKTDADVDNNAADQETESTP 223

Query: 549  PNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVN 728
             NIPPH+ SA TPE AYL+DEII KGER YL DIL    SG+       +   YP FV N
Sbjct: 224  RNIPPHNPSADTPERAYLIDEIIPKGERAYLLDILEALHSGVD-----LDLKPYPSFVSN 278

Query: 729  RIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIY 908
            R++              A +LSYITHL +FW+  +SS  KS+   +    +  KIPR+ Y
Sbjct: 279  RLYKLRELQDEEEKEKLACMLSYITHLQSFWERLSSSGCKSKH--HSKPADHSKIPRITY 336

Query: 909  QKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            Q+  ++F+DP S++L T K EL+IGYILVLTLF D F T P
Sbjct: 337  QRLQRMFVDPESHLLSTQKNELLIGYILVLTLFVDNFKTDP 377



 Score =  118 bits (295), Expect(2) = 2e-73
 Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 8/105 (7%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCD--------SEQPPEVRVFRHKQHRSSRLDLVV 199
           V M AL ++ DRIAPVVGYF SGY+P          +   P VRVFR+K+ R++RL+LVV
Sbjct: 25  VSMEALAESGDRIAPVVGYFPSGYDPLGGGAAAPAAAADDPSVRVFRNKR-RANRLELVV 83

Query: 200 RPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
            P+GS VEFVG+SY GEAA  Q C YALGVLDK TQTLK+VPIAA
Sbjct: 84  SPRGSAVEFVGRSYAGEAAAPQLCTYALGVLDKATQTLKIVPIAA 128


>ref|XP_020587407.1| DNA-directed RNA polymerase I subunit rpa49 [Phalaenopsis equestris]
          Length = 424

 Score =  180 bits (457), Expect(2) = 9e-72
 Identities = 102/219 (46%), Positives = 140/219 (63%), Gaps = 2/219 (0%)
 Frame = +3

Query: 375  ISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGPN 554
            +++LT LYGTK+ + +  K + +  + ++PS    L+    +++ N+EA +D +     N
Sbjct: 153  MAELTQLYGTKKAKMVASKWKSIKRKVDDPSVLGSLEVGT-ESNLNDEASKDIEEPLVRN 211

Query: 555  IPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDS--GIGENSTFWEENYYPCFVVN 728
            IPP+D SAVTP NAY L +IILKGER YL DIL    S    G NS FWEEN+YPCFV++
Sbjct: 212  IPPYDASAVTPHNAYPLHKIILKGERSYLKDILETLKSEPNDGYNSKFWEENHYPCFVIH 271

Query: 729  RIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIY 908
            R++              A ILSYITHL+NF K+A S R KS    Y  A++++ IP VI+
Sbjct: 272  RLNKLRDMQDEAEKTQFASILSYITHLINFRKVAESVRWKSYRD-YDKAMSEFMIPNVIF 330

Query: 909  QKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFST 1025
             +F+ +FLDP SNVL + K +L+I YILVLTL AD F T
Sbjct: 331  HRFLSIFLDPISNVLSSTKSQLLISYILVLTLHADDFRT 369



 Score =  120 bits (300), Expect(2) = 9e-72
 Identities = 60/95 (63%), Positives = 75/95 (78%)
 Frame = +2

Query: 50  MSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVEFV 229
           M  L++T DR+AP+VGYF SGY+P  +   P+V V+R+K  + +RL+LVVRP   NVEFV
Sbjct: 26  MEVLSETGDRMAPIVGYFPSGYDPLAAGADPDVNVYRNKS-KPNRLELVVRPPDCNVEFV 84

Query: 230 GKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           GKSY GEAA+ Q C YALGVLDK+TQTLK+VPIAA
Sbjct: 85  GKSYAGEAAMPQLCTYALGVLDKETQTLKIVPIAA 119


>ref|XP_020673334.1| DNA-directed RNA polymerase I subunit rpa49 isoform X2 [Dendrobium
            catenatum]
          Length = 431

 Score =  174 bits (440), Expect(2) = 8e-70
 Identities = 98/221 (44%), Positives = 139/221 (62%), Gaps = 4/221 (1%)
 Frame = +3

Query: 375  ISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTD--TNNEALEDTKATTG 548
            ++DL  LYGTKR + ++ + + + ++ N+PS    L+   + TD   N+EA +D K    
Sbjct: 153  MADLNLLYGTKRSKIIESRRQSINKKLNDPSILGPLE---VGTDGNLNDEASKDIKEPLD 209

Query: 549  PNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFD--SGIGENSTFWEENYYPCFV 722
             NIPP+D SAVTP++AY L+ II KGER YL DIL   +       N+ FWE NYYP FV
Sbjct: 210  RNIPPYDPSAVTPQSAYPLNNIIPKGERGYLKDILETLELEPDNARNAEFWESNYYPSFV 269

Query: 723  VNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRV 902
            ++R+               A ILSYITHL+NF K+A S RR+     Y +A++K+ IP V
Sbjct: 270  IHRLSKLREIQDEEEKTQFACILSYITHLINFRKVAESVRRRKDKPDYAEAMSKFMIPSV 329

Query: 903  IYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFST 1025
            ++Q+F+ LFLDP SN++ ++K  L+I Y+LVLTL AD F T
Sbjct: 330  VFQRFLTLFLDPVSNLISSEKSVLLICYVLVLTLHADDFLT 370



 Score =  120 bits (300), Expect(2) = 8e-70
 Identities = 58/97 (59%), Positives = 78/97 (80%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 223
           +EM  L++T D++APVVGYF SGY+P  +   P++++FR+K+ + +RL+LVVRP   NVE
Sbjct: 24  LEMEVLSETADKMAPVVGYFPSGYDPVAAGADPDIKLFRNKK-KPNRLELVVRPDDCNVE 82

Query: 224 FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           FVGKSY GEAA+ Q C YALGV+DK+TQTLK+ PIAA
Sbjct: 83  FVGKSYAGEAALPQLCTYALGVVDKETQTLKIFPIAA 119


>ref|XP_020673335.1| DNA-directed RNA polymerase I subunit rpa49 isoform X3 [Dendrobium
            catenatum]
          Length = 384

 Score =  158 bits (399), Expect(2) = 4e-65
 Identities = 93/210 (44%), Positives = 129/210 (61%), Gaps = 4/210 (1%)
 Frame = +3

Query: 408  RQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTD--TNNEALEDTKATTGPNIPPHDLSAV 581
            R++ ++KK+       N+PS    L+   + TD   N+EA +D K     NIPP+D SAV
Sbjct: 124  RRQSINKKL-------NDPSILGPLE---VGTDGNLNDEASKDIKEPLDRNIPPYDPSAV 173

Query: 582  TPENAYLLDEIILKGERDYLFDILGLFD--SGIGENSTFWEENYYPCFVVNRIHXXXXXX 755
            TP++AY L+ II KGER YL DIL   +       N+ FWE NYYP FV++R+       
Sbjct: 174  TPQSAYPLNNIIPKGERGYLKDILETLELEPDNARNAEFWESNYYPSFVIHRLSKLREIQ 233

Query: 756  XXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQKFVKLFLD 935
                    A ILSYITHL+NF K+A S RR+     Y +A++K+ IP V++Q+F+ LFLD
Sbjct: 234  DEEEKTQFACILSYITHLINFRKVAESVRRRKDKPDYAEAMSKFMIPSVVFQRFLTLFLD 293

Query: 936  PSSNVLPTDKKELVIGYILVLTLFADRFST 1025
            P SN++ ++K  L+I Y+LVLTL AD F T
Sbjct: 294  PVSNLISSEKSVLLICYVLVLTLHADDFLT 323



 Score =  120 bits (300), Expect(2) = 4e-65
 Identities = 58/97 (59%), Positives = 78/97 (80%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPPEVRVFRHKQHRSSRLDLVVRPQGSNVE 223
           +EM  L++T D++APVVGYF SGY+P  +   P++++FR+K+ + +RL+LVVRP   NVE
Sbjct: 24  LEMEVLSETADKMAPVVGYFPSGYDPVAAGADPDIKLFRNKK-KPNRLELVVRPDDCNVE 82

Query: 224 FVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           FVGKSY GEAA+ Q C YALGV+DK+TQTLK+ PIAA
Sbjct: 83  FVGKSYAGEAALPQLCTYALGVVDKETQTLKIFPIAA 119


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Vitis
            vinifera]
          Length = 421

 Score =  147 bits (370), Expect(2) = 3e-58
 Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 1/221 (0%)
 Frame = +3

Query: 372  RISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGP 551
            R+ DLT+LYGTK+     KK++ L  Q ++P +++ L  ++ +   N EALE T A +  
Sbjct: 165  RMRDLTNLYGTKKSITQAKKLQAL-NQKDDPRSQKDLDRKLKEVVINKEALESTSAHSAR 223

Query: 552  NIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNR 731
            NIPP+D +A TP+ AY LD+II KGE DYL DIL L  +G+       E + Y  FV NR
Sbjct: 224  NIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEV-----ESSAYSSFVCNR 278

Query: 732  IHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQ 911
            I               A I SYI HL+ +         K + ++   +   +KIP ++ Q
Sbjct: 279  IQKLKELEDEGEKTTLACIFSYINHLLKY---------KDRNSMDASSAKHHKIPGILNQ 329

Query: 912  KFVKLF-LDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            KF  +F LD  S  L  +KK+L+I Y+LVLTL+AD F T P
Sbjct: 330  KFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDP 370



 Score =  108 bits (270), Expect(2) = 3e-58
 Identities = 57/102 (55%), Positives = 74/102 (72%), Gaps = 5/102 (4%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPC-----DSEQPPEVRVFRHKQHRSSRLDLVVRPQ 208
           V+M  + + P++I P+VGYF SG++P      +S+ PP V+VFR+K  R++RL LVV P 
Sbjct: 29  VKMEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKA-RANRLQLVVSPN 87

Query: 209 GSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
            S V FVG SY GEAA  Q C YALGVLDK+TQTLK+VPIA+
Sbjct: 88  DSKVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIAS 129


>gb|KMZ63406.1| DNA-directed RNA polymerase I subunit rpa49 [Zostera marina]
          Length = 519

 Score =  158 bits (399), Expect(2) = 6e-58
 Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 2/222 (0%)
 Frame = +3

Query: 369  RRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTG 548
            +R  +LT+LYG+K+ R ++KK + + +Q NNP A+   QD+M     N  A E+T A   
Sbjct: 246  KRYRELTNLYGSKKNRTLNKKYQSMEDQRNNPDAQACAQDQMKDIQINRTANENT-AQVI 304

Query: 549  PNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSG--IGENSTFWEENYYPCFV 722
             N+PPHDLSA +PE AYL+++II K E  YL +IL + +SG  +   S F+    +PCFV
Sbjct: 305  LNVPPHDLSASSPEKAYLINKIIPKDEWKYLNNILEMVNSGKDLDTTSEFYRSGAFPCFV 364

Query: 723  VNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRV 902
            VNRI                 + +YITHL+ F  ++              A +   IPR+
Sbjct: 365  VNRIGKIRDSKDNSRKEELGRLFAYITHLITFMNMSFQKNFSEIIQSSVSAESILNIPRL 424

Query: 903  IYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTS 1028
            ++QKF+KLF+D  S  +  +KK+L+I YILV+TLF D FS+S
Sbjct: 425  VFQKFLKLFVDSESQKVSHEKKDLLISYILVVTLFVDNFSSS 466



 Score = 96.3 bits (238), Expect(2) = 6e-58
 Identities = 49/92 (53%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
 Frame = +2

Query: 59  LTDTPDRIAPVVGYFSSGYNPCDS--EQPPEVRVFRHKQHRSSRLDLVVRPQGSNVEFVG 232
           + + P R AP V YF SGY+P  +  +  P+V +FR+K+ RS+R++LVVRPQGS ++FVG
Sbjct: 122 IQNVPSRNAPFVTYFPSGYDPLKNGDKNLPDVSLFRNKK-RSNRVELVVRPQGSELDFVG 180

Query: 233 KSYEGEAAVHQPCHYALGVLDKDTQTLKVVPI 328
           KSY GEA   + C YALGV DK+T  LK++PI
Sbjct: 181 KSYTGEAVCPKICSYALGVFDKETNELKILPI 212


>gb|OVA10366.1| RNA polymerase I associated factor [Macleaya cordata]
          Length = 427

 Score =  138 bits (347), Expect(2) = 1e-57
 Identities = 87/223 (39%), Positives = 119/223 (53%), Gaps = 3/223 (1%)
 Frame = +3

Query: 372  RISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGP 551
            +I DLT+LYGTK+     KK  +L  +  +PS ++ LQ +  K   N EALE     T  
Sbjct: 167  KIRDLTNLYGTKKVITKAKKNDIL-HRKEDPSTQKDLQKKTEKLVINKEALESAGTYTAR 225

Query: 552  NIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNR 731
            NIPPHD +A TPE AY LD+II +GE D L D+L    S           N YP FV NR
Sbjct: 226  NIPPHDSTATTPEKAYPLDKIIFQGEWDSLLDVLDYVQS-----EEQLASNAYPSFVCNR 280

Query: 732  IHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQ 911
             H              A I SYITHL+ F        +  ++  Y  +   ++IP ++Y+
Sbjct: 281  AHKLMEIEDEVEKKTLACIYSYITHLIKF--------KDKKSLDYSASAKSHRIPDILYK 332

Query: 912  KFVKLFLD--PSSNVLPT-DKKELVIGYILVLTLFADRFSTSP 1031
            KF+++F D      + P+ +KK+L+I Y+LVLTL AD F T P
Sbjct: 333  KFLRMFHDQFDHGRIEPSLEKKDLLISYVLVLTLIADGFKTDP 375



 Score =  115 bits (288), Expect(2) = 1e-57
 Identities = 59/101 (58%), Positives = 75/101 (74%), Gaps = 5/101 (4%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNP-----CDSEQPPEVRVFRHKQHRSSRLDLVVRPQ 208
           V+M  +   P++IAP+VGYF SGY+P      + ++PP VRVF +KQ RSSRL+LVV P+
Sbjct: 29  VKMEIVPQHPEKIAPLVGYFPSGYDPQKIYTSEDDEPPRVRVFTNKQ-RSSRLELVVSPK 87

Query: 209 GSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIA 331
           GS V FVG S+ GEA   Q C YALGVLDK+TQ+LK+VPIA
Sbjct: 88  GSKVNFVGTSHSGEATASQACTYALGVLDKETQSLKIVPIA 128


>emb|CBI35920.3| unnamed protein product, partial [Vitis vinifera]
          Length = 391

 Score =  147 bits (370), Expect(2) = 1e-57
 Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 1/221 (0%)
 Frame = +3

Query: 372  RISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGP 551
            R+ DLT+LYGTK+     KK++ L  Q ++P +++ L  ++ +   N EALE T A +  
Sbjct: 135  RMRDLTNLYGTKKSITQAKKLQAL-NQKDDPRSQKDLDRKLKEVVINKEALESTSAHSAR 193

Query: 552  NIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNR 731
            NIPP+D +A TP+ AY LD+II KGE DYL DIL L  +G+       E + Y  FV NR
Sbjct: 194  NIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEV-----ESSAYSSFVCNR 248

Query: 732  IHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQ 911
            I               A I SYI HL+ +         K + ++   +   +KIP ++ Q
Sbjct: 249  IQKLKELEDEGEKTTLACIFSYINHLLKY---------KDRNSMDASSAKHHKIPGILNQ 299

Query: 912  KFVKLF-LDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            KF  +F LD  S  L  +KK+L+I Y+LVLTL+AD F T P
Sbjct: 300  KFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDP 340



 Score =  106 bits (265), Expect(2) = 1e-57
 Identities = 56/100 (56%), Positives = 72/100 (72%), Gaps = 5/100 (5%)
 Frame = +2

Query: 50  MSALTDTPDRIAPVVGYFSSGYNPC-----DSEQPPEVRVFRHKQHRSSRLDLVVRPQGS 214
           M  + + P++I P+VGYF SG++P      +S+ PP V+VFR+K  R++RL LVV P  S
Sbjct: 1   MEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKA-RANRLQLVVSPNDS 59

Query: 215 NVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
            V FVG SY GEAA  Q C YALGVLDK+TQTLK+VPIA+
Sbjct: 60  KVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIAS 99


>ref|XP_010273794.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Nelumbo
            nucifera]
          Length = 406

 Score =  147 bits (371), Expect(2) = 2e-57
 Identities = 91/219 (41%), Positives = 125/219 (57%), Gaps = 1/219 (0%)
 Frame = +3

Query: 372  RISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGP 551
            +I DLT+LYGTK+     KKM  L +Q  +P +++ +  ++     N +ALE     T  
Sbjct: 149  KIRDLTNLYGTKKSISRAKKMESL-KQKEDPISQDAVDKKIEGFVINKDALETAAVYTAR 207

Query: 552  NIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNR 731
            N+PPHD +A TP+ AY L++II KGE DYL D+L L  SG   +S     + YP FV NR
Sbjct: 208  NVPPHDPTATTPDKAYPLNKIIFKGEWDYLLDVLELLQSGATISS-----DAYPSFVCNR 262

Query: 732  IHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKY-KIPRVIY 908
            I+              A ILSYITHL+ F         K Q ++ G +  KY K P +I 
Sbjct: 263  IYKLEEIQDEMEKKRLACILSYITHLIKF---------KDQRSVDGASSAKYHKFPPIIL 313

Query: 909  QKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFST 1025
            QKF+ LF +  +  L  DK++L+I Y+LVLTLF D+FST
Sbjct: 314  QKFLTLFANSETYRLADDKQDLLISYVLVLTLFIDKFST 352



 Score =  105 bits (262), Expect(2) = 2e-57
 Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSEQPP--EVRVFRHKQHRSSRLDLVVRPQGSN 217
           V+M      PD+I P+VGYF SG+NP  SE+    +VRV+ +K +R +RL LVV P  S 
Sbjct: 15  VKMEIFHQHPDKIPPLVGYFPSGFNPKRSEEEDSTKVRVYSNK-NRPNRLQLVVSPNSSK 73

Query: 218 VEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           VEFVG SY  EAA  Q C YALGVLDK+TQTLK+VPIA+
Sbjct: 74  VEFVGTSYSSEAAAAQVCTYALGVLDKETQTLKIVPIAS 112


>ref|XP_022736064.1| DNA-directed RNA polymerase I subunit RPA49 [Durio zibethinus]
          Length = 449

 Score =  139 bits (349), Expect(2) = 1e-54
 Identities = 88/224 (39%), Positives = 118/224 (52%)
 Frame = +3

Query: 360  EGNRRISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKA 539
            E   ++ +LT+LYGTK+ RK  K    L ++ + P  ++ L  ++ +   + EALE+T A
Sbjct: 187  EKKDKMGELTALYGTKKDRKKRKDFIDLKKEAD-PELQKSLDKKIEQVAFDKEALENTSA 245

Query: 540  TTGPNIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCF 719
                NIPP+D SA TP  AY LD+II KGE D+L DI  L   G    S     N YP F
Sbjct: 246  LITHNIPPYDSSATTPLEAYPLDKIIFKGEWDFLGDIYKLLQVGAEVAS-----NAYPHF 300

Query: 720  VVNRIHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPR 899
            V NRIH              + I SYITHLV F  L +     S           +  P 
Sbjct: 301  VCNRIHKLDAIRDETVKGKLSCIFSYITHLVKFKDLFSMGHVTS--------AKNHNFPS 352

Query: 900  VIYQKFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            +I  +F+ +F DP S +L +DK +L+I Y+LVLTL AD F T P
Sbjct: 353  IIRHRFMSMFTDPGSKILSSDKIDLLISYVLVLTLHADGFQTDP 396



 Score =  104 bits (260), Expect(2) = 1e-54
 Identities = 53/111 (47%), Positives = 72/111 (64%), Gaps = 15/111 (13%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSE--------------QPPEVRVFRHK-QHRS 178
           V++    D P +I P+V YF SGYNP ++                PP+++VFR+  Q ++
Sbjct: 45  VKIQLFQDQPSKIPPLVAYFPSGYNPSEANPQTRQEEEEGNSQSNPPKIKVFRNMAQRKT 104

Query: 179 SRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIA 331
           +RL +VV P GSNV+FVG SY GEAA  Q C ++LGVLDK+T TLK+VPIA
Sbjct: 105 NRLQVVVSPSGSNVDFVGSSYSGEAAAPQVCRFSLGVLDKETGTLKIVPIA 155


>ref|XP_006426597.1| DNA-directed RNA polymerase I subunit RPA49 [Citrus clementina]
 gb|ESR39837.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
 dbj|GAY38494.1| hypothetical protein CUMW_037180 [Citrus unshiu]
          Length = 447

 Score =  141 bits (356), Expect(2) = 2e-54
 Identities = 89/217 (41%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
 Frame = +3

Query: 384  LTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGPNIPP 563
            L + YGTK+  +  KKM  L ++ N+P +++ L  +M     N EALE T + T  N+PP
Sbjct: 195  LDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALESTTSDTVLNVPP 253

Query: 564  HDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNRIHXX 743
            +D +A TP+ AY LD+IILKGE D++ DI     +G    S     + YP FV NRIH  
Sbjct: 254  YDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVIS-----DAYPSFVCNRIHKL 308

Query: 744  XXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINK-YKIPRVIYQKFV 920
                        A I SYITHLV F         K Q ++ G A  K ++IP++++QKF+
Sbjct: 309  REIQDDVEKQTLASIFSYITHLVKF---------KDQHSMDGGASAKQHRIPKILHQKFL 359

Query: 921  KLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
              F D  S  L  DK  L+I Y+LVLTL AD F T+P
Sbjct: 360  TSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNP 396



 Score =  100 bits (250), Expect(2) = 2e-54
 Identities = 51/99 (51%), Positives = 72/99 (72%), Gaps = 7/99 (7%)
 Frame = +2

Query: 59  LTDTPDRIAPVVGYFSSGYNPC----DSEQPPEVRVFRH---KQHRSSRLDLVVRPQGSN 217
           + + P++  P+VGYF S Y P     D E  P+VRV+R+   K++R+ R++LVV P+ S+
Sbjct: 60  IPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSS 119

Query: 218 VEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           V++VG SY GEA   Q CHYA+GVLD++TQTLK+VPIAA
Sbjct: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRNTQTLKIVPIAA 158


>ref|XP_006465974.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Citrus
            sinensis]
 gb|KDO65131.1| hypothetical protein CISIN_1g013236mg [Citrus sinensis]
          Length = 447

 Score =  141 bits (356), Expect(2) = 3e-54
 Identities = 89/217 (41%), Positives = 121/217 (55%), Gaps = 1/217 (0%)
 Frame = +3

Query: 384  LTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGPNIPP 563
            L + YGTK+  +  KKM  L ++ N+P +++ L  +M     N EALE T + T  N+PP
Sbjct: 195  LDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALESTTSDTVLNVPP 253

Query: 564  HDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNRIHXX 743
            +D +A TP+ AY LD+IILKGE D++ DI     +G    S     + YP FV NRIH  
Sbjct: 254  YDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVIS-----DAYPSFVCNRIHKL 308

Query: 744  XXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINK-YKIPRVIYQKFV 920
                        A I SYITHLV F         K Q ++ G A  K ++IP++++QKF+
Sbjct: 309  REIQDDVEKQTLASIFSYITHLVKF---------KDQHSMDGGASAKQHRIPKILHQKFL 359

Query: 921  KLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
              F D  S  L  DK  L+I Y+LVLTL AD F T+P
Sbjct: 360  TSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNP 396



 Score =  100 bits (249), Expect(2) = 3e-54
 Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 7/99 (7%)
 Frame = +2

Query: 59  LTDTPDRIAPVVGYFSSGYNPC----DSEQPPEVRVFRH---KQHRSSRLDLVVRPQGSN 217
           + + P++  P+VGYF S Y P     D E  P+VRV+R+   K++R+ R++LVV P+ S+
Sbjct: 60  IPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSS 119

Query: 218 VEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           V++VG SY GEA   Q CHYA+GVLD+ TQTLK+VPIAA
Sbjct: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAA 158


>ref|XP_007039490.2| PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Theobroma
            cacao]
          Length = 457

 Score =  137 bits (346), Expect(2) = 2e-53
 Identities = 85/220 (38%), Positives = 119/220 (54%)
 Frame = +3

Query: 372  RISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGP 551
            ++ +LT+LYGTK+ RK  K +  L ++ + P +++ L +++ +   N EAL +T A    
Sbjct: 199  KMGELTALYGTKKDRKKRKDLNNLKKEVD-PESQKSLDEKIEQVAFNKEALGNTSALVAR 257

Query: 552  NIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNR 731
            NIPPHD SA TP  AY LD+IILKG+ ++L DI GL + G    S     N YP FV NR
Sbjct: 258  NIPPHDCSATTPVEAYPLDKIILKGDWEFLGDIYGLLEVGAEVAS-----NAYPTFVCNR 312

Query: 732  IHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQ 911
            I+              + + S+ITHLV F    +  R  S           +KIP +I Q
Sbjct: 313  INKLEGIQDETEKRKLSCVFSFITHLVKFNDQFSMDRVASAKG--------HKIPSIIRQ 364

Query: 912  KFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            +F  +F DP       D+  L+I Y+LVLTL AD F T P
Sbjct: 365  RFFTMFTDPGLRKPSRDQINLLISYVLVLTLHADGFRTDP 404



 Score =  101 bits (252), Expect(2) = 2e-53
 Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 22/119 (18%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSE---------------------QPPEVRVFR 160
           V++    D P++I P+V YF SGYNPC ++                       P V+V+R
Sbjct: 45  VKIQLFQDQPNKIPPLVAYFPSGYNPCKTDPQTRQEEEEEEEEEEGPDNKSNQPRVKVYR 104

Query: 161 HK-QHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           +  Q +++RL +VV P GSNV+FVG +Y GEAA  Q C Y+LGVLD++T+TLK++PIA+
Sbjct: 105 NMAQRKTNRLQVVVSPSGSNVDFVGSNYSGEAAAAQVCKYSLGVLDRETRTLKIIPIAS 163


>gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, putative [Theobroma
            cacao]
          Length = 457

 Score =  137 bits (345), Expect(2) = 2e-53
 Identities = 85/220 (38%), Positives = 119/220 (54%)
 Frame = +3

Query: 372  RISDLTSLYGTKRQRKMDKKMRLLVEQTNNPSAREQLQDEMLKTDTNNEALEDTKATTGP 551
            ++ +LT+LYGTK+ RK  K +  L ++ + P +++ L +++ +   N EAL +T A    
Sbjct: 199  KMGELTALYGTKKDRKKRKDLNNLKKEVD-PESQKSLDEKIEQVAFNKEALGNTSALVAR 257

Query: 552  NIPPHDLSAVTPENAYLLDEIILKGERDYLFDILGLFDSGIGENSTFWEENYYPCFVVNR 731
            NIPPHD SA TP  AY LD+IILKG+ ++L DI GL + G    S     N YP FV NR
Sbjct: 258  NIPPHDSSATTPVEAYPLDKIILKGDWEFLGDIYGLLEVGAEVAS-----NAYPTFVCNR 312

Query: 732  IHXXXXXXXXXXXXXQAFILSYITHLVNFWKLAASSRRKSQTALYGDAINKYKIPRVIYQ 911
            I+              + + S+ITHLV F    +  R  S           +KIP +I Q
Sbjct: 313  INKLEGIQDETEKRKLSCVFSFITHLVKFNDQFSMDRVASAKG--------HKIPSIIRQ 364

Query: 912  KFVKLFLDPSSNVLPTDKKELVIGYILVLTLFADRFSTSP 1031
            +F  +F DP       D+  L+I Y+LVLTL AD F T P
Sbjct: 365  RFFTMFTDPGLRKPSRDQINLLISYVLVLTLHADGFRTDP 404



 Score =  102 bits (253), Expect(2) = 2e-53
 Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 22/119 (18%)
 Frame = +2

Query: 44  VEMSALTDTPDRIAPVVGYFSSGYNPCDSE---------------------QPPEVRVFR 160
           V++    D P++I P+V YF SGYNPC ++                       P V+V+R
Sbjct: 45  VKIQLFQDQPNKIPPLVAYFPSGYNPCKTDPQTRQGEEEEEEEEEGPDNKSNQPRVKVYR 104

Query: 161 HK-QHRSSRLDLVVRPQGSNVEFVGKSYEGEAAVHQPCHYALGVLDKDTQTLKVVPIAA 334
           +  Q +++RL +VV P GSNV+FVG +Y GEAA  Q C Y+LGVLD++T+TLK++PIA+
Sbjct: 105 NMAQRKTNRLQVVVSPSGSNVDFVGSNYSGEAAAAQVCRYSLGVLDRETRTLKIIPIAS 163