BLASTX nr result
ID: Ophiopogon26_contig00000116
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon26_contig00000116
(999 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [As... 441 e-140
ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV su... 384 e-119
ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV su... 384 e-119
ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV su... 371 e-114
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su... 347 e-105
ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 iso... 338 e-102
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su... 332 e-100
gb|PKU59217.1| DNA-directed RNA polymerase D subunit 1 [Dendrobi... 306 2e-91
ref|XP_020572391.1| DNA-directed RNA polymerase IV subunit 1 iso... 305 4e-91
ref|XP_020572390.1| DNA-directed RNA polymerase IV subunit 1 iso... 305 6e-91
ref|XP_020681066.1| DNA-directed RNA polymerase IV subunit 1 iso... 306 6e-91
ref|XP_020681065.1| DNA-directed RNA polymerase IV subunit 1 iso... 306 7e-91
ref|XP_020572389.1| DNA-directed RNA polymerase IV subunit 1 iso... 305 1e-90
ref|XP_020572386.1| DNA-directed RNA polymerase IV subunit 1 iso... 305 2e-90
gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas ... 300 1e-88
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub... 290 2e-87
gb|ONM02909.1| DNA-directed RNA polymerase IV subunit 1, partial... 290 1e-86
gb|ONM02906.1| DNA-directed RNA polymerase IV subunit 1, partial... 290 4e-86
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 290 5e-85
ref|XP_015611692.1| PREDICTED: DNA-directed RNA polymerase IV su... 286 1e-83
>ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [Asparagus officinalis]
Length = 1529
Score = 441 bits (1135), Expect = e-140
Identities = 225/348 (64%), Positives = 264/348 (75%), Gaps = 16/348 (4%)
Frame = +3
Query: 3 KFSGSEKKWGTVDNQAECKHCSRNSEE--WYPAIKFKTL------------SRDTNGKKC 140
KFSGS KKW +V+NQA CK+CS+NS+ WYPAIKF+TL D+ GKKC
Sbjct: 152 KFSGSNKKWASVENQASCKYCSKNSQNKYWYPAIKFETLLTDSKGKIVSKGKTDSKGKKC 211
Query: 141 VAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYL 314
VAI AE N VP++F N SLSEVLPKDFW+F+PM+ QH SESMD N+I LSP Q FYL
Sbjct: 212 VAIVAEINERVPRQFRNKSLSEVLPKDFWDFMPMVSYQHNKSESMDVNKIILSPAQVFYL 271
Query: 315 LRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVD 494
L+E+ KEFIE+FV RRELIFLS +PV+PNCQ VVET DK TK YR VVD
Sbjct: 272 LKEISKEFIEKFVSRRELIFLSYVPVAPNCQHVVETXXXXXXNV----DKCTKVYRSVVD 327
Query: 495 TSKKIDELHKHQQFGFVAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG 674
S+ I+E H+HQQFGF AA+ IASRVHDCLN+SKLH+N S + + Y S +ND+PS TG
Sbjct: 328 ASRNINEYHQHQQFGFRAAAYIASRVHDCLNISKLHNNSTSAEEQAAY-SVKNDKPSCTG 386
Query: 675 LKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSC 854
LKW+KEVVLSKRSDNTFR+IMIGDPK++ GEIGLPRD+ LYI+EHVN HNV+KLK C
Sbjct: 387 LKWVKEVVLSKRSDNTFRVIMIGDPKMKTGEIGLPRDICENLYIAEHVNNHNVKKLKEVC 446
Query: 855 RLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRN 998
LH+ SK EL ARR+ KLI IH+S QLQVGDT N+ LEDGDIIMVNRN
Sbjct: 447 ELHVRSKRELHARRKDKLILIHNSKQLQVGDTFNKPLEDGDIIMVNRN 494
>ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Phoenix dactylifera]
Length = 1566
Score = 384 bits (987), Expect = e-119
Identities = 190/327 (58%), Positives = 246/327 (75%), Gaps = 2/327 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
KKW D QA CK+C+RN+ +WYPA+KFK LS+D GKK +++ AE N +PKKF+N SL
Sbjct: 175 KKWAKTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSL 234
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
+VLP+DFW+FVP Q E++ NRIT+SP QAF LL+ELD EFI+QF RR+++F
Sbjct: 235 GDVLPQDFWSFVPTFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLF 290
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LS +PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDE +HQQF +A S
Sbjct: 291 LSYLPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATS 350
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMI 734
I SRV DCLNVSKL + +S GD S +GLKW+KEVVLSKRSDN FRM
Sbjct: 351 FITSRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMT 400
Query: 735 MIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIF 914
M+GDPKI+LG+IG+P D+S+ +YISEHVN +N+EKL SC LHL++K EL +R +G+L
Sbjct: 401 MVGDPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTS 460
Query: 915 IHSSDQLQVGDTLNRSLEDGDIIMVNR 995
+ S+QLQVGDT+ R LE+ D+I+VNR
Sbjct: 461 VRKSNQLQVGDTIYRPLENDDLILVNR 487
>ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Phoenix dactylifera]
ref|XP_017700628.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Phoenix dactylifera]
Length = 1567
Score = 384 bits (987), Expect = e-119
Identities = 190/327 (58%), Positives = 246/327 (75%), Gaps = 2/327 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
KKW D QA CK+C+RN+ +WYPA+KFK LS+D GKK +++ AE N +PKKF+N SL
Sbjct: 175 KKWAKTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSL 234
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
+VLP+DFW+FVP Q E++ NRIT+SP QAF LL+ELD EFI+QF RR+++F
Sbjct: 235 GDVLPQDFWSFVPTFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLF 290
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LS +PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDE +HQQF +A S
Sbjct: 291 LSYLPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATS 350
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMI 734
I SRV DCLNVSKL + +S GD S +GLKW+KEVVLSKRSDN FRM
Sbjct: 351 FITSRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMT 400
Query: 735 MIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIF 914
M+GDPKI+LG+IG+P D+S+ +YISEHVN +N+EKL SC LHL++K EL +R +G+L
Sbjct: 401 MVGDPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTS 460
Query: 915 IHSSDQLQVGDTLNRSLEDGDIIMVNR 995
+ S+QLQVGDT+ R LE+ D+I+VNR
Sbjct: 461 VRKSNQLQVGDTIYRPLENDDLILVNR 487
>ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
guineensis]
Length = 1569
Score = 371 bits (953), Expect = e-114
Identities = 184/327 (56%), Positives = 242/327 (74%), Gaps = 2/327 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
KKW D QA CK+C+RN+ WYPA+KFK S+D GKK ++I AE N +PKKF+N SL
Sbjct: 175 KKWAKTDAQATCKYCARNATNWYPAVKFKLFSKDMLGKKSLSIIAEVNEKLPKKFQNKSL 234
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
+VLP+DFW+FVP Q E++ NRIT+SP QAF LL+ELD EFI+QF RR+++F
Sbjct: 235 CDVLPQDFWSFVPSFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLF 290
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LS +PV+PNC RVVET + ++DGP+LS D+ TKAY+ +VD S+KI+E +HQQF +A S
Sbjct: 291 LSYLPVAPNCHRVVETSYVHADGPQLSFDERTKAYKRLVDISRKIEEFRQHQQFVPLATS 350
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMI 734
I +RV DCLNVSKL + +S GD S +GLKW+K+VVLSKRSDN FRM
Sbjct: 351 FITNRVLDCLNVSKLRTRNSSNGDSS----------CLSGLKWLKDVVLSKRSDNAFRMT 400
Query: 735 MIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIF 914
MIGDPKI+LG+IG+P D+S+ L +SEHVNA+N+EKL SC LHL++ EL R +G+L
Sbjct: 401 MIGDPKIKLGQIGIPFDLSQNLCVSEHVNAYNLEKLNMSCNLHLLTNEELHTRSKGRLTS 460
Query: 915 IHSSDQLQVGDTLNRSLEDGDIIMVNR 995
+ S+QLQ+GDT+ R LE+GD+I+VNR
Sbjct: 461 VRKSNQLQIGDTIYRPLENGDLILVNR 487
>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
acuminata subsp. malaccensis]
ref|XP_009411450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
acuminata subsp. malaccensis]
Length = 1569
Score = 347 bits (891), Expect = e-105
Identities = 170/333 (51%), Positives = 235/333 (70%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 KFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKK 176
K + K W + D+Q CK+C+R + WYP +KFK S+D G++ ++I AE N +PKK
Sbjct: 173 KILKTRKNWVSKDSQVCCKYCARKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKK 232
Query: 177 FENMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVP 356
F + SL EVLP+D+WNF+P + + P++I L+P Q F LL ELD EFI+QFV
Sbjct: 233 FHSQSLGEVLPEDYWNFIPKVSLL----QGAKPSKIDLTPHQVFCLLSELDPEFIQQFVS 288
Query: 357 RRELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQF 536
RREL+FLS +P++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI E HQQF
Sbjct: 289 RRELLFLSYLPITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQF 348
Query: 537 GFVAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSD 716
G +A S SRV DC N SKLH++ +S GD S++G++W+K+VVLSKR+D
Sbjct: 349 GPLATSYTMSRVLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTD 396
Query: 717 NTFRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARR 896
N FRM M+GDPKI+L EIG+P D+S +L ++E VN++N+EKL SC LHL+ K L R
Sbjct: 397 NVFRMTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRS 456
Query: 897 QGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
+G+L +H ++QLQVGD ++R LE+GDII+VNR
Sbjct: 457 KGQLTSLHKTNQLQVGDIVSRPLENGDIILVNR 489
>ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
ref|XP_020084501.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
Length = 1545
Score = 338 bits (867), Expect = e-102
Identities = 168/331 (50%), Positives = 235/331 (70%), Gaps = 6/331 (1%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+W D Q+ CK C+ YP+++FK S+D GK+ ++I AE N +PKKF+N S+
Sbjct: 177 KRWARTDKQSSCKFCASTPNNRYPSVRFKISSKDMVGKRNLSIVAEVNEKLPKKFQNKSM 236
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
EVLP+D+W+F+PM Q + + +RITLSP QAF+LL++LD EF++QFVPRREL+F
Sbjct: 237 DEVLPQDYWDFIPMDQQQRQ----LKTSRITLSPHQAFHLLKQLDPEFLKQFVPRRELLF 292
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLS-HDKSTKAYRGVVDTSKKIDELHKHQQFGFVAA 551
LS +PV+ N R +ET H ++DGP+LS D+ TKAY+ VV+ S++IDE +H QF A+
Sbjct: 293 LSSLPVTANSHRAMETSHPHADGPQLSFRDERTKAYKKVVEVSRRIDEFRQHPQFRAFAS 352
Query: 552 SLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSDNT 722
S +++RV DCLN SKLHS S N +P S+G LKW+KEV+LSKRSD
Sbjct: 353 SYVSNRVMDCLNASKLHS------------STSNGEPISSGVSGLKWLKEVILSKRSDYA 400
Query: 723 FRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQG 902
FR++M+GDPKI+L EIG+P ++ L IS+HVN++N+EKL +SC LHL++K EL ARR G
Sbjct: 401 FRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARRDG 460
Query: 903 KLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
+LI + DQLQ+GD R LE+GD+I++NR
Sbjct: 461 QLISVRKPDQLQIGDIFYRPLENGDLILINR 491
>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
acuminata subsp. malaccensis]
Length = 1562
Score = 332 bits (851), Expect = e-100
Identities = 167/333 (50%), Positives = 230/333 (69%), Gaps = 2/333 (0%)
Frame = +3
Query: 3 KFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKK 176
K + K W + D+Q R + WYP +KFK S+D G++ ++I AE N +PKK
Sbjct: 173 KILKTRKNWVSKDSQ-------RKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKK 225
Query: 177 FENMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVP 356
F + SL EVLP+D+WNF+P + + P++I L+P Q F LL ELD EFI+QFV
Sbjct: 226 FHSQSLGEVLPEDYWNFIPKVSLL----QGAKPSKIDLTPHQVFCLLSELDPEFIQQFVS 281
Query: 357 RRELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQF 536
RREL+FLS +P++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI E HQQF
Sbjct: 282 RRELLFLSYLPITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQF 341
Query: 537 GFVAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSD 716
G +A S SRV DC N SKLH++ +S GD S++G++W+K+VVLSKR+D
Sbjct: 342 GPLATSYTMSRVLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTD 389
Query: 717 NTFRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARR 896
N FRM M+GDPKI+L EIG+P D+S +L ++E VN++N+EKL SC LHL+ K L R
Sbjct: 390 NVFRMTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRS 449
Query: 897 QGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
+G+L +H ++QLQVGD ++R LE+GDII+VNR
Sbjct: 450 KGQLTSLHKTNQLQVGDIVSRPLENGDIILVNR 482
>gb|PKU59217.1| DNA-directed RNA polymerase D subunit 1 [Dendrobium catenatum]
Length = 1286
Score = 306 bits (784), Expect = 2e-91
Identities = 155/327 (47%), Positives = 219/327 (66%), Gaps = 2/327 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+ G + + CK+C+ +S EWYP +KFK +RD G+K ++I AE N +PKKF+N S
Sbjct: 157 KEVGAIGKNSGCKYCASSSFEWYPTLKFKISNRDVQGRKGLSILAEVNEKLPKKFQNRSF 216
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
E+LPKD+WNFVP + + ++ N I LSP Q F LL++LD +FI QFV RREL+F
Sbjct: 217 GELLPKDYWNFVP----NYHKQQGLNSNSIFLSPWQVFCLLKQLDLDFINQFVSRRELLF 272
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LSC+PV+PN R+VET H +SDG R+S D+ TK Y+ +VD KK+D + +H Q + +S
Sbjct: 273 LSCLPVTPNSHRIVETTHAFSDGSRISFDERTKIYKRMVDLGKKLDGVLQHPQLRALTSS 332
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMI 734
I RV +C SKL S+K +GD S S G+KW+KEVVLSKR+D+ FRM
Sbjct: 333 FITDRVRECFVSSKLRSHKLLSGDSSSNIS---------GMKWLKEVVLSKRTDHAFRMT 383
Query: 735 MIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIF 914
M+GDPK++L E+G+P D++R+L+++E+V+ N+E L++S +HL R KLIF
Sbjct: 384 MVGDPKVRLDEVGIPYDIARSLFVTEYVSKFNLETLRASQGIHL--------WRDQKLIF 435
Query: 915 IHSSDQLQVGDTLNRSLEDGDIIMVNR 995
H SD L +GD + R L DGDI++VNR
Sbjct: 436 NHKSD-LHIGDRIERPLADGDIVLVNR 461
>ref|XP_020572391.1| DNA-directed RNA polymerase IV subunit 1 isoform X4 [Phalaenopsis
equestris]
Length = 1225
Score = 305 bits (781), Expect = 4e-91
Identities = 153/328 (46%), Positives = 221/328 (67%), Gaps = 3/328 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+ GT+ N++ CK+C+ +S EWYP +KFK ++D G+K ++I AE N +PKKF+N S
Sbjct: 160 KEVGTIGNKSGCKYCASSSFEWYPTLKFKISNKDFQGRKGLSILAEVNAKLPKKFQNRSF 219
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
E+LPKDFWNFVP ++ + ++ N I LSP Q F LL++LD++FI QFV RREL+F
Sbjct: 220 GELLPKDFWNFVP----KYHKQQCLNSNSIFLSPWQVFSLLKQLDRDFINQFVSRRELLF 275
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LSC+PV+PN R+VE H +DG R+S D TK Y+ + D KK+D + +H QF + +S
Sbjct: 276 LSCLPVTPNSHRIVEVTHALTDGSRISFDDRTKIYKRMADLGKKLDGVLQHPQFRALTSS 335
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSS-TGLKWIKEVVLSKRSDNTFRM 731
I RV +C SKL S +G D PSS +G+KW+KEVVLSKR+D FRM
Sbjct: 336 FITDRVRECFVSSKLRSRALLSG----------DSPSSVSGMKWLKEVVLSKRTDYAFRM 385
Query: 732 IMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLI 911
M+GDPK++L E+G+P D++R+L+++E V N+EKL++S R+ L + +LI
Sbjct: 386 TMVGDPKLRLDEVGIPSDIARSLFVTEFVTKFNLEKLRTSQRIRL--------WKDQRLI 437
Query: 912 FIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
F H S++LQ+GD + R L DGD+++VNR
Sbjct: 438 FNHKSNELQLGDRIERPLADGDVVLVNR 465
>ref|XP_020572390.1| DNA-directed RNA polymerase IV subunit 1 isoform X3 [Phalaenopsis
equestris]
Length = 1277
Score = 305 bits (781), Expect = 6e-91
Identities = 153/328 (46%), Positives = 221/328 (67%), Gaps = 3/328 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+ GT+ N++ CK+C+ +S EWYP +KFK ++D G+K ++I AE N +PKKF+N S
Sbjct: 160 KEVGTIGNKSGCKYCASSSFEWYPTLKFKISNKDFQGRKGLSILAEVNAKLPKKFQNRSF 219
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
E+LPKDFWNFVP ++ + ++ N I LSP Q F LL++LD++FI QFV RREL+F
Sbjct: 220 GELLPKDFWNFVP----KYHKQQCLNSNSIFLSPWQVFSLLKQLDRDFINQFVSRRELLF 275
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LSC+PV+PN R+VE H +DG R+S D TK Y+ + D KK+D + +H QF + +S
Sbjct: 276 LSCLPVTPNSHRIVEVTHALTDGSRISFDDRTKIYKRMADLGKKLDGVLQHPQFRALTSS 335
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSS-TGLKWIKEVVLSKRSDNTFRM 731
I RV +C SKL S +G D PSS +G+KW+KEVVLSKR+D FRM
Sbjct: 336 FITDRVRECFVSSKLRSRALLSG----------DSPSSVSGMKWLKEVVLSKRTDYAFRM 385
Query: 732 IMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLI 911
M+GDPK++L E+G+P D++R+L+++E V N+EKL++S R+ L + +LI
Sbjct: 386 TMVGDPKLRLDEVGIPSDIARSLFVTEFVTKFNLEKLRTSQRIRL--------WKDQRLI 437
Query: 912 FIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
F H S++LQ+GD + R L DGD+++VNR
Sbjct: 438 FNHKSNELQLGDRIERPLADGDVVLVNR 465
>ref|XP_020681066.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Dendrobium
catenatum]
Length = 1438
Score = 306 bits (784), Expect = 6e-91
Identities = 155/327 (47%), Positives = 219/327 (66%), Gaps = 2/327 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+ G + + CK+C+ +S EWYP +KFK +RD G+K ++I AE N +PKKF+N S
Sbjct: 157 KEVGAIGKNSGCKYCASSSFEWYPTLKFKISNRDVQGRKGLSILAEVNEKLPKKFQNRSF 216
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
E+LPKD+WNFVP + + ++ N I LSP Q F LL++LD +FI QFV RREL+F
Sbjct: 217 GELLPKDYWNFVP----NYHKQQGLNSNSIFLSPWQVFCLLKQLDLDFINQFVSRRELLF 272
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LSC+PV+PN R+VET H +SDG R+S D+ TK Y+ +VD KK+D + +H Q + +S
Sbjct: 273 LSCLPVTPNSHRIVETTHAFSDGSRISFDERTKIYKRMVDLGKKLDGVLQHPQLRALTSS 332
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMI 734
I RV +C SKL S+K +GD S S G+KW+KEVVLSKR+D+ FRM
Sbjct: 333 FITDRVRECFVSSKLRSHKLLSGDSSSNIS---------GMKWLKEVVLSKRTDHAFRMT 383
Query: 735 MIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIF 914
M+GDPK++L E+G+P D++R+L+++E+V+ N+E L++S +HL R KLIF
Sbjct: 384 MVGDPKVRLDEVGIPYDIARSLFVTEYVSKFNLETLRASQGIHL--------WRDQKLIF 435
Query: 915 IHSSDQLQVGDTLNRSLEDGDIIMVNR 995
H SD L +GD + R L DGDI++VNR
Sbjct: 436 NHKSD-LHIGDRIERPLADGDIVLVNR 461
>ref|XP_020681065.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Dendrobium
catenatum]
Length = 1499
Score = 306 bits (784), Expect = 7e-91
Identities = 155/327 (47%), Positives = 219/327 (66%), Gaps = 2/327 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+ G + + CK+C+ +S EWYP +KFK +RD G+K ++I AE N +PKKF+N S
Sbjct: 157 KEVGAIGKNSGCKYCASSSFEWYPTLKFKISNRDVQGRKGLSILAEVNEKLPKKFQNRSF 216
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
E+LPKD+WNFVP + + ++ N I LSP Q F LL++LD +FI QFV RREL+F
Sbjct: 217 GELLPKDYWNFVP----NYHKQQGLNSNSIFLSPWQVFCLLKQLDLDFINQFVSRRELLF 272
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LSC+PV+PN R+VET H +SDG R+S D+ TK Y+ +VD KK+D + +H Q + +S
Sbjct: 273 LSCLPVTPNSHRIVETTHAFSDGSRISFDERTKIYKRMVDLGKKLDGVLQHPQLRALTSS 332
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMI 734
I RV +C SKL S+K +GD S S G+KW+KEVVLSKR+D+ FRM
Sbjct: 333 FITDRVRECFVSSKLRSHKLLSGDSSSNIS---------GMKWLKEVVLSKRTDHAFRMT 383
Query: 735 MIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIF 914
M+GDPK++L E+G+P D++R+L+++E+V+ N+E L++S +HL R KLIF
Sbjct: 384 MVGDPKVRLDEVGIPYDIARSLFVTEYVSKFNLETLRASQGIHL--------WRDQKLIF 435
Query: 915 IHSSDQLQVGDTLNRSLEDGDIIMVNR 995
H SD L +GD + R L DGDI++VNR
Sbjct: 436 NHKSD-LHIGDRIERPLADGDIVLVNR 461
>ref|XP_020572389.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Phalaenopsis
equestris]
Length = 1418
Score = 305 bits (781), Expect = 1e-90
Identities = 153/328 (46%), Positives = 221/328 (67%), Gaps = 3/328 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+ GT+ N++ CK+C+ +S EWYP +KFK ++D G+K ++I AE N +PKKF+N S
Sbjct: 75 KEVGTIGNKSGCKYCASSSFEWYPTLKFKISNKDFQGRKGLSILAEVNAKLPKKFQNRSF 134
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
E+LPKDFWNFVP ++ + ++ N I LSP Q F LL++LD++FI QFV RREL+F
Sbjct: 135 GELLPKDFWNFVP----KYHKQQCLNSNSIFLSPWQVFSLLKQLDRDFINQFVSRRELLF 190
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LSC+PV+PN R+VE H +DG R+S D TK Y+ + D KK+D + +H QF + +S
Sbjct: 191 LSCLPVTPNSHRIVEVTHALTDGSRISFDDRTKIYKRMADLGKKLDGVLQHPQFRALTSS 250
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSS-TGLKWIKEVVLSKRSDNTFRM 731
I RV +C SKL S +G D PSS +G+KW+KEVVLSKR+D FRM
Sbjct: 251 FITDRVRECFVSSKLRSRALLSG----------DSPSSVSGMKWLKEVVLSKRTDYAFRM 300
Query: 732 IMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLI 911
M+GDPK++L E+G+P D++R+L+++E V N+EKL++S R+ L + +LI
Sbjct: 301 TMVGDPKLRLDEVGIPSDIARSLFVTEFVTKFNLEKLRTSQRIRL--------WKDQRLI 352
Query: 912 FIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
F H S++LQ+GD + R L DGD+++VNR
Sbjct: 353 FNHKSNELQLGDRIERPLADGDVVLVNR 380
>ref|XP_020572386.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
equestris]
ref|XP_020572387.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
equestris]
ref|XP_020572388.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
equestris]
Length = 1503
Score = 305 bits (781), Expect = 2e-90
Identities = 153/328 (46%), Positives = 221/328 (67%), Gaps = 3/328 (0%)
Frame = +3
Query: 21 KKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSL 194
K+ GT+ N++ CK+C+ +S EWYP +KFK ++D G+K ++I AE N +PKKF+N S
Sbjct: 160 KEVGTIGNKSGCKYCASSSFEWYPTLKFKISNKDFQGRKGLSILAEVNAKLPKKFQNRSF 219
Query: 195 SEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIF 374
E+LPKDFWNFVP ++ + ++ N I LSP Q F LL++LD++FI QFV RREL+F
Sbjct: 220 GELLPKDFWNFVP----KYHKQQCLNSNSIFLSPWQVFSLLKQLDRDFINQFVSRRELLF 275
Query: 375 LSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGFVAAS 554
LSC+PV+PN R+VE H +DG R+S D TK Y+ + D KK+D + +H QF + +S
Sbjct: 276 LSCLPVTPNSHRIVEVTHALTDGSRISFDDRTKIYKRMADLGKKLDGVLQHPQFRALTSS 335
Query: 555 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSS-TGLKWIKEVVLSKRSDNTFRM 731
I RV +C SKL S +G D PSS +G+KW+KEVVLSKR+D FRM
Sbjct: 336 FITDRVRECFVSSKLRSRALLSG----------DSPSSVSGMKWLKEVVLSKRTDYAFRM 385
Query: 732 IMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLI 911
M+GDPK++L E+G+P D++R+L+++E V N+EKL++S R+ L + +LI
Sbjct: 386 TMVGDPKLRLDEVGIPSDIARSLFVTEFVTKFNLEKLRTSQRIRL--------WKDQRLI 437
Query: 912 FIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
F H S++LQ+GD + R L DGD+++VNR
Sbjct: 438 FNHKSNELQLGDRIERPLADGDVVLVNR 465
>gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas comosus]
Length = 1556
Score = 300 bits (768), Expect = 1e-88
Identities = 152/309 (49%), Positives = 217/309 (70%), Gaps = 6/309 (1%)
Frame = +3
Query: 87 YPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQHENS 260
YP+++FK S+D GK+ ++I AE N +PKKF+N S+ EVLP+D+W+F+PM Q +
Sbjct: 219 YPSVRFKISSKDMVGKRNLSIVAEVNEKLPKKFQNKSMDEVLPQDYWDFIPMDQQQRQ-- 276
Query: 261 ESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSD 440
+ +RITLSP QAF+LL++LD EF++QFVPRREL+FLS +PV+ N R +ET H ++D
Sbjct: 277 --LKTSRITLSPHQAFHLLKQLDPEFLKQFVPRRELLFLSSLPVTANSHRAMETSHPHAD 334
Query: 441 GPRLS-HDKSTKAYRGVVDTSKKIDELHKHQQFGFVAASLIASRVHDCLNVSKLHSNKAS 617
GP+LS D+ TKAY+ VV+ S++IDE +H QF A+S +++R+H
Sbjct: 335 GPQLSFRDERTKAYKKVVEVSRRIDEFRQHPQFRAFASSYVSNRLHS------------- 381
Query: 618 TGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDV 788
S N +P S+G LKW+KEV+LSKRSD FR++M+GDPKI+L EIG+P +
Sbjct: 382 --------STSNGEPISSGVSGLKWLKEVILSKRSDYAFRLVMVGDPKIKLDEIGIPLSL 433
Query: 789 SRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLE 968
+ L IS+HVN++N+EKL +SC LHL++K EL ARR G+LI + DQLQ+GD R LE
Sbjct: 434 AENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARRDGQLISVRKPDQLQIGDIFYRPLE 493
Query: 969 DGDIIMVNR 995
+GD+I++NR
Sbjct: 494 NGDLILINR 502
>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
mays]
Length = 871
Score = 290 bits (741), Expect = 2e-87
Identities = 154/331 (46%), Positives = 219/331 (66%), Gaps = 14/331 (4%)
Frame = +3
Query: 45 QAECKHCSRNSEEWYPAIKFKTLS------------RDTNGKKCVAITAEF--NVPKKFE 182
QA CK+CS++ + YP+I FKTLS R+ + + ++I AE +P + +
Sbjct: 115 QATCKYCSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSK 174
Query: 183 NMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRR 362
E LP DFW+FVP S+++ +S + +I LSP Q FY+L++ D E I+QFV RR
Sbjct: 175 GKGSLEGLPLDFWDFVP---SENKQVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRR 230
Query: 363 ELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGF 542
EL+FLSC+PV+PNC RVVE + DG RL+ D TKAY+ +VD S++ID+ +H F
Sbjct: 231 ELLFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSV 289
Query: 543 VAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNT 722
+A+SL++SRV +CL SKL+S KA + Y G+KW+K+VVLSKRSDN
Sbjct: 290 LASSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNV 339
Query: 723 FRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQG 902
FR IM+GDPKI+L EIG+P D+S +L +SEHV+++N + C LHL++K EL RR G
Sbjct: 340 FRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNG 399
Query: 903 KLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
KL+F+ +DQL++GD R L+DGDII++NR
Sbjct: 400 KLMFLRKADQLEIGDIAYRPLQDGDIILINR 430
>gb|ONM02909.1| DNA-directed RNA polymerase IV subunit 1, partial [Zea mays]
Length = 999
Score = 290 bits (741), Expect = 1e-86
Identities = 154/331 (46%), Positives = 219/331 (66%), Gaps = 14/331 (4%)
Frame = +3
Query: 45 QAECKHCSRNSEEWYPAIKFKTLS------------RDTNGKKCVAITAEF--NVPKKFE 182
QA CK+CS++ + YP+I FKTLS R+ + + ++I AE +P + +
Sbjct: 115 QATCKYCSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSK 174
Query: 183 NMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRR 362
E LP DFW+FVP S+++ +S + +I LSP Q FY+L++ D E I+QFV RR
Sbjct: 175 GKGSLEGLPLDFWDFVP---SENKQVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRR 230
Query: 363 ELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGF 542
EL+FLSC+PV+PNC RVVE + DG RL+ D TKAY+ +VD S++ID+ +H F
Sbjct: 231 ELLFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSV 289
Query: 543 VAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNT 722
+A+SL++SRV +CL SKL+S KA + Y G+KW+K+VVLSKRSDN
Sbjct: 290 LASSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNV 339
Query: 723 FRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQG 902
FR IM+GDPKI+L EIG+P D+S +L +SEHV+++N + C LHL++K EL RR G
Sbjct: 340 FRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNG 399
Query: 903 KLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
KL+F+ +DQL++GD R L+DGDII++NR
Sbjct: 400 KLMFLRKADQLEIGDIAYRPLQDGDIILINR 430
>gb|ONM02906.1| DNA-directed RNA polymerase IV subunit 1, partial [Zea mays]
Length = 1088
Score = 290 bits (741), Expect = 4e-86
Identities = 154/331 (46%), Positives = 219/331 (66%), Gaps = 14/331 (4%)
Frame = +3
Query: 45 QAECKHCSRNSEEWYPAIKFKTLS------------RDTNGKKCVAITAEF--NVPKKFE 182
QA CK+CS++ + YP+I FKTLS R+ + + ++I AE +P + +
Sbjct: 115 QATCKYCSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSK 174
Query: 183 NMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRR 362
E LP DFW+FVP S+++ +S + +I LSP Q FY+L++ D E I+QFV RR
Sbjct: 175 GKGSLEGLPLDFWDFVP---SENKQVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRR 230
Query: 363 ELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGF 542
EL+FLSC+PV+PNC RVVE + DG RL+ D TKAY+ +VD S++ID+ +H F
Sbjct: 231 ELLFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSV 289
Query: 543 VAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNT 722
+A+SL++SRV +CL SKL+S KA + Y G+KW+K+VVLSKRSDN
Sbjct: 290 LASSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNV 339
Query: 723 FRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQG 902
FR IM+GDPKI+L EIG+P D+S +L +SEHV+++N + C LHL++K EL RR G
Sbjct: 340 FRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNG 399
Query: 903 KLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
KL+F+ +DQL++GD R L+DGDII++NR
Sbjct: 400 KLMFLRKADQLEIGDIAYRPLQDGDIILINR 430
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
ref|XP_020394614.1| DNA dependent RNA polymerase D largest subunit isoform X1 [Zea mays]
gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
Length = 1444
Score = 290 bits (741), Expect = 5e-85
Identities = 154/331 (46%), Positives = 219/331 (66%), Gaps = 14/331 (4%)
Frame = +3
Query: 45 QAECKHCSRNSEEWYPAIKFKTLS------------RDTNGKKCVAITAEF--NVPKKFE 182
QA CK+CS++ + YP+I FKTLS R+ + + ++I AE +P + +
Sbjct: 115 QATCKYCSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSK 174
Query: 183 NMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRR 362
E LP DFW+FVP S+++ +S + +I LSP Q FY+L++ D E I+QFV RR
Sbjct: 175 GKGSLEGLPLDFWDFVP---SENKQVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRR 230
Query: 363 ELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTSKKIDELHKHQQFGF 542
EL+FLSC+PV+PNC RVVE + DG RL+ D TKAY+ +VD S++ID+ +H F
Sbjct: 231 ELLFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSV 289
Query: 543 VAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNT 722
+A+SL++SRV +CL SKL+S KA + Y G+KW+K+VVLSKRSDN
Sbjct: 290 LASSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNV 339
Query: 723 FRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQG 902
FR IM+GDPKI+L EIG+P D+S +L +SEHV+++N + C LHL++K EL RR G
Sbjct: 340 FRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNG 399
Query: 903 KLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
KL+F+ +DQL++GD R L+DGDII++NR
Sbjct: 400 KLMFLRKADQLEIGDIAYRPLQDGDIILINR 430
>ref|XP_015611692.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Oryza
sativa Japonica Group]
Length = 1467
Score = 286 bits (731), Expect = 1e-83
Identities = 150/345 (43%), Positives = 216/345 (62%), Gaps = 14/345 (4%)
Frame = +3
Query: 3 KFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS------------RDTNGKKCVA 146
K +G KK Q CK+CS++ + YP++ FK L+ R+T+ ++
Sbjct: 104 KQNGDTKKTDGTTIQTTCKYCSKDGAKLYPSVIFKMLTSPRVTLSRSKLHRNTSVMDKIS 163
Query: 147 ITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLR 320
I AE V +N + E LP+DFW+FVP ++ +S +I LSP Q F++L+
Sbjct: 164 IIAEVAGGVTHNSKNKAPHETLPQDFWDFVP---DDNQPPQSNVAKKI-LSPYQVFHMLK 219
Query: 321 ELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDTS 500
LD E I Q PRREL+FLSC+PV+PNC RV E + +SDGPRL+ D TKAY+ +VD S
Sbjct: 220 NLDPELINQVTPRRELLFLSCLPVTPNCHRVAEMQYGHSDGPRLAFDDRTKAYKRMVDVS 279
Query: 501 KKIDELHKHQQFGFVAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLK 680
K+ID+ +H QF A+S++ SRV +CL SKL+S K+ D + P + G K
Sbjct: 280 KRIDDCRQHPQFSVFASSVVTSRVMECLKSSKLYSRKSDGEDPT--------SPDTYGTK 331
Query: 681 WIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRL 860
W+K+++LSKRSDN FR IM+GDPKI L EIG+P D++ L +SE V+ +N E + C L
Sbjct: 332 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNL 391
Query: 861 HLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNR 995
HL++K L RR GKLIF+ +++L++GD R L+DGD+++VNR
Sbjct: 392 HLLTKEVLLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNR 436