BLASTX nr result
ID: Ophiopogon25_contig00055736
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00055736
(485 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA97586.1| retrotransposon protein, putative, Ty1-copia subc... 68 9e-11
gb|ABF96637.1| retrotransposon protein, putative, Ty1-copia subc... 66 1e-10
gb|AAP44618.1| putative polyprotein [Oryza sativa Japonica Group] 66 1e-10
gb|AAR01692.1| putative gag and pol polyprotein [Oryza sativa Ja... 66 1e-10
gb|ABA99751.1| retrotransposon protein, putative, Ty1-copia subc... 67 2e-10
gb|AAL83348.1|AC074282_15 Putative gag-pol polyprotein [Oryza sa... 67 2e-10
gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subc... 66 3e-10
emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group] 65 3e-10
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc... 65 4e-10
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc... 65 6e-10
gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group] 65 6e-10
gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-10
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group] 65 7e-10
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-10
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc... 65 7e-10
gb|AAK13129.1|AC083945_4 Putative gag-pol polyprotein [Oryza sat... 65 7e-10
gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-10
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-10
gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-10
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-10
>gb|ABA97586.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 786
Score = 67.8 bits (164), Expect(2) = 9e-11
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Frame = -2
Query: 475 LDGTVDKYKARLVANGYTQQKGINFFNT-SPSRLDLCH*SSFDISL*P*DAYSPNGCQDS 299
LDGT++KYKARLVA GYTQ++G++FF+T SP L ++ + +
Sbjct: 367 LDGTIEKYKARLVAKGYTQKEGVDFFDTYSPVALLTTIPVLLTLAASHGLLVHQMDVKTT 426
Query: 298 FLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
FL + EI M QP G++ + E + LY LKQAPKQWH+KF+
Sbjct: 427 FLNGELEE-EIYMDQPDGYVLEGREGMVCKLLKSLYGLKQAPKQWHEKFD 475
Score = 26.2 bits (56), Expect(2) = 9e-11
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 489 DKCVYYRYGGGEGVILCLYV 508
>gb|ABF96637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1543
Score = 66.2 bits (160), Expect(2) = 1e-10
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 1214 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1269
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E+ + LY LKQAPKQWH+KF+ T
Sbjct: 1270 --KTAFLNGELEE-EIYMDQPDGYVLEGQERMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1325
Score = 27.3 bits (59), Expect(2) = 1e-10
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 113 IDKCIYSKVMDSDHIILCLFV 51
+DKC+Y + + +ILCL+V
Sbjct: 1334 VDKCVYYRYGGGEGVILCLYV 1354
>gb|AAP44618.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1494
Score = 66.2 bits (160), Expect(2) = 1e-10
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 1165 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1220
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E+ + LY LKQAPKQWH+KF+ T
Sbjct: 1221 --KTAFLNGELEE-EIYMDQPDGYVLEGQERMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1276
Score = 27.3 bits (59), Expect(2) = 1e-10
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 113 IDKCIYSKVMDSDHIILCLFV 51
+DKC+Y + + +ILCL+V
Sbjct: 1285 VDKCVYYRYGGGEGVILCLYV 1305
>gb|AAR01692.1| putative gag and pol polyprotein [Oryza sativa Japonica Group]
Length = 1427
Score = 66.2 bits (160), Expect(2) = 1e-10
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 1098 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1153
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E+ + LY LKQAPKQWH+KF+ T
Sbjct: 1154 --KTAFLNGELEE-EIYMDQPDGYVLEGQERMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1209
Score = 27.3 bits (59), Expect(2) = 1e-10
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 113 IDKCIYSKVMDSDHIILCLFV 51
+DKC+Y + + +ILCL+V
Sbjct: 1218 VDKCVYYRYGGGEGVILCLYV 1238
>gb|ABA99751.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 67.4 bits (163), Expect(2) = 2e-10
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSP- 317
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D +
Sbjct: 1333 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTF 1392
Query: 316 -NGCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
NG D EI M QP GF+ + E + LY LKQAPKQWH+KFN
Sbjct: 1393 LNGELDE---------EIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFN 1440
Score = 25.4 bits (54), Expect(2) = 2e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1454 DKCVYYRHGGGEGVILCLYV 1473
>gb|AAL83348.1|AC074282_15 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gb|AAP51926.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1109
Score = 66.6 bits (161), Expect(2) = 2e-10
Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FFNT + R+ L +S + + D
Sbjct: 935 DGTIEKYKARLVAKGYTQKEGEDFFNTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 990
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 991 --KTAFLNGELEE-EIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1046
Score = 26.2 bits (56), Expect(2) = 2e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1056 DKCVYYRYGGGEGVILCLYV 1075
>gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1286
Score = 65.9 bits (159), Expect(2) = 3e-10
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 831 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 886
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E+ + LY LKQAPKQWH+KF+ T
Sbjct: 887 --KTAFLNGELEE-EIYMDQPDGYVLEGQEEMVCKLLKSLYGLKQAPKQWHEKFDITLT 942
Score = 26.2 bits (56), Expect(2) = 3e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 952 DKCVYYRYGGGEGVILCLYV 971
>emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group]
Length = 1113
Score = 65.5 bits (158), Expect(2) = 3e-10
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSP- 317
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D +
Sbjct: 641 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 700
Query: 316 -NGCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
NG D EI M QP GF+ + E + LY LKQAPKQWH+KF+
Sbjct: 701 LNGELDE---------EIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFD 748
Score = 26.6 bits (57), Expect(2) = 3e-10
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 113 IDKCIYSKVMDSDHIILCLFV 51
+DKC+Y + + +ILCL+V
Sbjct: 761 VDKCVYYRHGGGEGVILCLYV 781
>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 65.5 bits (158), Expect(2) = 4e-10
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSP- 317
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D +
Sbjct: 848 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907
Query: 316 -NGCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
NG D EI M QP GF+ + E + LY LKQAPKQWH+KF+
Sbjct: 908 LNGELDE---------EIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFD 955
Score = 26.2 bits (56), Expect(2) = 4e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 969 DKCVYYRYGGGEGVILCLYV 988
>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1303
Score = 65.1 bits (157), Expect(2) = 6e-10
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 958 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLIHQMDV---- 1013
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 1014 --KTAFLNGELEE-EIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1069
Score = 26.2 bits (56), Expect(2) = 6e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1079 DKCVYYRYGGGEGVILCLYV 1098
>gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1117
Score = 65.1 bits (157), Expect(2) = 6e-10
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 662 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 717
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M+QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 718 --KTAFLNGELEE-EIYMNQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 773
Score = 26.2 bits (56), Expect(2) = 6e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 783 DKCVYYRYGGGEGVILCLYV 802
>gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2027
Score = 65.5 bits (158), Expect(2) = 7e-10
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSP- 317
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D +
Sbjct: 1043 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 1102
Query: 316 -NGCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
NG D EI M QP GF+ + E + LY LKQAPKQWH+KF+
Sbjct: 1103 LNGELDE---------EIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFD 1150
Score = 25.4 bits (54), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1164 DKCVYYRHGGGEGVILCLYV 1183
>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1861
Score = 65.5 bits (158), Expect(2) = 7e-10
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSP- 317
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D +
Sbjct: 1262 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 1321
Query: 316 -NGCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
NG D EI M QP GF+ + E + LY LKQAPKQWH+KF+
Sbjct: 1322 LNGELDE---------EIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFD 1369
Score = 25.4 bits (54), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1383 DKCVYYRHGGGEGVILCLYV 1402
>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1518
Score = 65.5 bits (158), Expect(2) = 7e-10
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSP- 317
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D +
Sbjct: 1064 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 1123
Query: 316 -NGCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
NG D EI M QP GF+ + E + LY LKQAPKQWH+KF+
Sbjct: 1124 LNGELDE---------EIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFD 1171
Score = 25.4 bits (54), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1185 DKCVYYRHGGGEGVILCLYV 1204
>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1479
Score = 64.7 bits (156), Expect(2) = 7e-10
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 1024 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1079
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 1080 --KTAFLNGELEE-EIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1135
Score = 26.2 bits (56), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1145 DKCVYYRYGGGEGVILCLYV 1164
>gb|AAK13129.1|AC083945_4 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1470
Score = 64.7 bits (156), Expect(2) = 7e-10
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 35 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLIHQMDV---- 90
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFN 155
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+
Sbjct: 91 --KTAFLNGELEE-EIYMDQPDGYVLESQEGMVCKLLKSLYGLKQAPKQWHEKFD 142
Score = 26.2 bits (56), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 156 DKCVYYRCGGGEGVILCLYV 175
>gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1457
Score = 64.7 bits (156), Expect(2) = 7e-10
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 1002 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1057
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 1058 --KTAFLNGELEE-EIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1113
Score = 26.2 bits (56), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1123 DKCVYYRYGGGEGVILCLYV 1142
>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1453
Score = 64.7 bits (156), Expect(2) = 7e-10
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 998 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1053
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 1054 --KTAFLNGELEE-EIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1109
Score = 26.2 bits (56), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1119 DKCVYYRYGGGEGVILCLYV 1138
>gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1452
Score = 64.7 bits (156), Expect(2) = 7e-10
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 1001 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1056
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 1057 --KTAFLNGELEE-EIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1112
Score = 26.2 bits (56), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1122 DKCVYYRYGGGEGVILCLYV 1141
>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1448
Score = 64.7 bits (156), Expect(2) = 7e-10
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = -2
Query: 472 DGTVDKYKARLVANGYTQQKGINFFNT-------SPSRLDLCH*SSFDISL*P*DAYSPN 314
DGT++KYKARLVA GYTQ++G +FF+T + R+ L +S + + D
Sbjct: 993 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV---- 1048
Query: 313 GCQDSFLK*RSQG*EICMSQPKGFIAK*HEKYINWWF--LYRLKQAPKQWHQKFNCHCT 143
+ +FL + EI M QP G++ + E + LY LKQAPKQWH+KF+ T
Sbjct: 1049 --KTAFLNGELEE-EIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLT 1104
Score = 26.2 bits (56), Expect(2) = 7e-10
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 110 DKCIYSKVMDSDHIILCLFV 51
DKC+Y + + +ILCL+V
Sbjct: 1114 DKCVYYRYGGGEGVILCLYV 1133