BLASTX nr result

ID: Ophiopogon25_contig00055380 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00055380
         (462 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020256884.1| E3 ubiquitin-protein ligase BRE1-like 2 [Asp...    57   2e-06

>ref|XP_020256884.1| E3 ubiquitin-protein ligase BRE1-like 2 [Asparagus officinalis]
 gb|ONK75057.1| uncharacterized protein A4U43_C03F12870 [Asparagus officinalis]
          Length = 862

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/37 (70%), Positives = 31/37 (83%)
 Frame = +3

Query: 12  KKSKMHSFEKNFKDLKGKQNSYDQTLITMNRI*NQVI 122
           +KSKMH  EK  KDLK KQ+SYDQTL+TMNRI NQ++
Sbjct: 38  QKSKMHDLEKKLKDLKDKQDSYDQTLMTMNRIWNQLV 74


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