BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00053633
         (852 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKI45901.1| hypothetical protein CRG98_033700 [Punica granatum]    154   1e-39
gb|PKI48613.1| hypothetical protein CRG98_031032 [Punica granatum]    144   9e-39
gb|PKI68495.1| hypothetical protein CRG98_011133 [Punica granatum]    146   2e-38
emb|CAN83767.1| hypothetical protein VITISV_032010 [Vitis vinifera]   139   4e-35
gb|PKI56506.1| hypothetical protein CRG98_023144 [Punica granatum]    135   6e-35
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen...   117   2e-34
gb|PKI48889.1| hypothetical protein CRG98_030737 [Punica granatum]    139   3e-34
gb|PKI67027.1| hypothetical protein CRG98_012565 [Punica granatum]    134   1e-33
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...   119   6e-33
gb|PKI76236.1| hypothetical protein CRG98_003347 [Punica granatum]    119   2e-30
gb|PHT40220.1| Retrovirus-related Pol polyprotein from transposo...   107   2e-28
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   102   2e-28
gb|OMO94644.1| Integrase, catalytic core [Corchorus capsularis]       105   2e-28
gb|PKI43124.1| hypothetical protein CRG98_036503 [Punica granatum]    119   6e-28
gb|AAK29467.1| polyprotein-like [Solanum chilense]                     99   2e-27
emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera]   121   3e-27
gb|PRQ53540.1| putative RNA-directed DNA polymerase [Rosa chinen...   117   4e-27
gb|PKI52799.1| hypothetical protein CRG98_026799 [Punica granatum]    115   3e-26
gb|PKI61249.1| hypothetical protein CRG98_018348 [Punica granatum]    109   1e-25
gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymera...    96   9e-25

>gb|PKI45901.1| hypothetical protein CRG98_033700 [Punica granatum]
          Length = 535

 Score =  154 bits (390), Expect = 1e-39
 Identities = 82/174 (47%), Positives = 108/174 (62%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           CLET + CKL+LK VRHVPE+RLN IS G LD + Y +   +GR KL  G +++AR +  
Sbjct: 91  CLETELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNEFSNGRWKLSKGLLIVARGQKT 150

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLKEF*TFQKFH 688
            TLYRL A+   G++N V+D   ELW+++LGH+SEK  +   R  S P+     +     
Sbjct: 151 DTLYRLRARHNSGQINVVEDYPIELWHRRLGHISEKGIQILARKQSLPVKGMHLSTCDHC 210

Query: 689 AKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
             V+RETG  LKC+R+ N GEY    F +YC  HGI+ EKT   TPQ N  AER
Sbjct: 211 LAVERETGMKLKCVRADNGGEYRG-PFENYCKTHGIKLEKTVPKTPQQNRLAER 263


>gb|PKI48613.1| hypothetical protein CRG98_031032 [Punica granatum]
          Length = 435

 Score =  144 bits (363), Expect(2) = 9e-39
 Identities = 79/190 (41%), Positives = 111/190 (58%), Gaps = 16/190 (8%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           CLET + CKL+LK VRHVPE+RLN IS+G L+ + Y +   +GR KL  G++++AR +  
Sbjct: 225 CLETELGCKLLLKKVRHVPEIRLNLISMGQLNDEGYSNEFSNGRWKLSKGSLIVARGQKT 284

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLKEF------- 667
            TLYRL A+   G++N  +D S +LW+++L H+SEK  +   R  S P+  +        
Sbjct: 285 DTLYRLRARHNSGQVNVAEDYSIKLWHRRLRHISEKGIQILARKQSLPVQDDHSRKVWAH 344

Query: 668 ---------*TFQKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASD 820
                      F+ FH  V+RET   LKC+R+   GEY    F +Y   HGI+ EKT   
Sbjct: 345 PMRTKDQVTDIFKNFHVAVERETSMKLKCVRADYGGEYRG-PFENYYRTHGIKLEKTVPK 403

Query: 821 TPQHNGAAER 850
           TPQ NG AE+
Sbjct: 404 TPQQNGLAEK 413



 Score = 45.4 bits (106), Expect(2) = 9e-39
 Identities = 38/110 (34%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +1

Query: 4   YHYCGKEGHMKNY-RAWKRQQXXXXXXXXXXXXXXXTTTVLCSCEAEILSMGECLRIGNS 180
           YHY GKEGH K   RA K+ Q               TTTV    E  I+   +   +  +
Sbjct: 122 YHY-GKEGHYKRECRALKKNQNGNGESKKEEG----TTTVASDGETYIVC--DEAYVNFT 174

Query: 181 SQGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
            Q    V D G  FH T   + F SY   D+G V+MGN    K + I D+
Sbjct: 175 CQDSTWVADTGVSFHVTPHRDFFSSYTTGDYGYVRMGNGQSCKIVGIGDV 224


>gb|PKI68495.1| hypothetical protein CRG98_011133 [Punica granatum]
          Length = 312

 Score =  146 bits (369), Expect = 2e-38
 Identities = 82/174 (47%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
 Frame = +2

Query: 335 ETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCCT 514
           +T + CKL+LK VRHVPE+RLN IS G LD + Y +   +GR KL  G++++AR +   T
Sbjct: 78  KTELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNKFSNGRWKLSKGSLIVARGQKTDT 137

Query: 515 LYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLKEF*T--FQKFH 688
           LYRL AK   G++N V+D   ELW+K+LGH+SEK     +        K+  T  F+ FH
Sbjct: 138 LYRLRAKHNSGQINVVEDYPIELWHKRLGHISEKDDHSKKVWAYSMKTKDQVTEIFKNFH 197

Query: 689 AKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
           A V+ ETG   KC+R  N GEY    F +YC  HGI+ E+T   TPQ NG AER
Sbjct: 198 AAVEIETGMKQKCVRVDNGGEYRG-PFENYCRTHGIKLERTVPKTPQQNGLAER 250


>emb|CAN83767.1| hypothetical protein VITISV_032010 [Vitis vinifera]
          Length = 380

 Score =  139 bits (351), Expect = 4e-35
 Identities = 80/178 (44%), Positives = 105/178 (58%), Gaps = 4/178 (2%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           C ET++ CK  LK VRHV +L L+ +S   LD Q YE++   G+ KL  G++V+ + + C
Sbjct: 85  CFETHMRCKFTLKDVRHVLDLCLSLMSGFSLDKQCYENHFGKGKWKLTKGSLVVVKGETC 144

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACK----F*QRSLSFPLLKEF*TF 676
           CTL ++  KVC  EL  ++  S ELW+K+LGHMSEK CK    F  RS    L K    +
Sbjct: 145 CTLCKIQGKVCNDELYVIEGISLELWHKRLGHMSEKDCKFWVFFNSRSKK-KLEKLGLAY 203

Query: 677 QKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
                 +  ET   L+  R  N GEYTS  F  YC K+GI+HEKT  DTPQHNG  +R
Sbjct: 204 SDICGPMDVET---LRRNRFDNRGEYTSRVFETYCTKNGIRHEKTILDTPQHNGVTKR 258


>gb|PKI56506.1| hypothetical protein CRG98_023144 [Punica granatum]
          Length = 530

 Score =  135 bits (339), Expect(2) = 6e-35
 Identities = 75/174 (43%), Positives = 98/174 (56%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           CLET + CKL+LK VRHV E+RLN IS G LD + Y +     R K   G++++AR +  
Sbjct: 157 CLETELGCKLLLKKVRHVLEIRLNLISTGQLDDEGYNNEFSDERWKFSKGSLIVARGQKT 216

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLKEF*TFQKFH 688
            TLYRL A+   G++N  +D   ELW+++LGH+SE                         
Sbjct: 217 DTLYRLRARHNSGQVNVAEDYPIELWHRRLGHISE------------------------- 251

Query: 689 AKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
            KV+RET   LKC+R+ N GEY    F +YC  HGI+ EKT   TPQ NG AER
Sbjct: 252 -KVERETDMKLKCVRADNSGEYRG-PFENYCRTHGIKLEKTVPKTPQQNGLAER 303



 Score = 42.0 bits (97), Expect(2) = 6e-35
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = +1

Query: 199 VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           V D GA FH T   + F SY   D+G VKMGNE   K + I D+
Sbjct: 113 VVDTGALFHITPHRDFFSSYTIGDYGYVKMGNEQSCKIVGIGDV 156


>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1340

 Score =  117 bits (292), Expect(2) = 2e-34
 Identities = 55/111 (49%), Positives = 75/111 (67%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           C ET++  KL+LK VR+VP LRLN +S G+LD Q + H+    + +L  G++VIAR K+C
Sbjct: 341 CFETDLGNKLMLKDVRYVPGLRLNLMSTGVLDRQGFHHHGGDQKWRLTKGSLVIARGKMC 400

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLK 661
           CTLY+ + K+CKGELN   DSS  LW+K+LGHMSEK  +   +    P  K
Sbjct: 401 CTLYKTYGKICKGELNVADDSSPSLWHKRLGHMSEKGLQVLAKKSLIPFAK 451



 Score = 58.5 bits (140), Expect(2) = 2e-34
 Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
 Frame = +1

Query: 7   HYCGKEGHMK-NYRAWKR--QQXXXXXXXXXXXXXXXTTTVLCSCEAEILSM-GECLRIG 174
           H+CG  GHMK N    K+  ++               T   +   E E L + GECL + 
Sbjct: 230 HHCGIFGHMKKNCNKLKKDPKEGRDGNTHQPNDDTRNTAASVSHDECEFLCLEGECLHVD 289

Query: 175 NSSQGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           + S  +  V D+GA FH T   E F +Y+  DFG VKMGN+ YSK   I D+
Sbjct: 290 DCSS-VAWVVDSGASFHATPHLEYFTTYQGGDFGRVKMGNDGYSKISGIGDI 340



 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +2

Query: 665 F*TFQKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAA 844
           F TF++FHA V+RETGR+LKC+RS N GEYTS++FRDYC KHGI+H KT   TPQHNG A
Sbjct: 527 FQTFKEFHAMVERETGRTLKCIRSDNGGEYTSNEFRDYCSKHGIKHVKTIPGTPQHNGVA 586

Query: 845 ER 850
           ER
Sbjct: 587 ER 588


>gb|PKI48889.1| hypothetical protein CRG98_030737 [Punica granatum]
          Length = 472

 Score =  139 bits (349), Expect = 3e-34
 Identities = 77/175 (44%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
 Frame = +2

Query: 335 ETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCCT 514
           +T + CKL+LK VRHVPE+RLN IS G LD + Y +   +GR KL  G++++AR +   T
Sbjct: 205 DTELSCKLLLKKVRHVPEIRLNLISTGQLDDEGYGNEFSNGRWKLSKGSLIVARGQKTDT 264

Query: 515 LYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPL-LKEF*T--FQKF 685
           LYRLHA+    ++N  +D   ELW+++L H+SEK     ++  ++P+  K+  T  F+ F
Sbjct: 265 LYRLHARHNSSQVNVAEDYPIELWHRRLRHISEKD-DHSKKVWAYPMRTKDQVTEIFKNF 323

Query: 686 HAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
           H  V+RETG  LKC+R+ N  EY    F +YC  HGI+ EKT   TPQ N   +R
Sbjct: 324 HVVVERETGMKLKCVRADNGCEYRG-PFENYCRNHGIKLEKTVPKTPQQNRLVKR 377


>gb|PKI67027.1| hypothetical protein CRG98_012565 [Punica granatum]
          Length = 325

 Score =  134 bits (338), Expect = 1e-33
 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 3/177 (1%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           CLET + CKL+LK VRHV E+RLN IS+G LD + Y +    GR KL  G++++AR +  
Sbjct: 16  CLETKLCCKLLLKKVRHVLEIRLNLISIGQLDDEGYSNEFSSGRWKLSKGSLIVARGQKT 75

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLKE---F*TFQ 679
            TLYRL A+   G++N  +D   ELW+++LGH S+K      +  ++P+  +      F+
Sbjct: 76  NTLYRLRARHNSGQVNVAEDYPIELWHRRLGHTSDKD-DHSMKVWAYPMRTKDQVIEIFK 134

Query: 680 KFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
            FH  V+RETG  LKC+R+ N GEY    F++YC  H I+ EKT   +    G A R
Sbjct: 135 NFHVAVERETGMKLKCVRADNGGEYKG-LFKNYCRTHEIKLEKTLKLSKSFRGEAIR 190


>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1321

 Score =  119 bits (297), Expect(2) = 6e-33
 Identities = 55/111 (49%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
 Frame = +2

Query: 332 LETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCC 511
           L+T + C L+LK VRH+P++RLN ISV +LD + YEH +  GR KL  G++V+A+ KLCC
Sbjct: 333 LQTGVGCTLILKDVRHIPDIRLNLISVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCC 392

Query: 512 TLYRLHAKVCKGELNAVK-DSSSELWYKKLGHMSEKACKF*QRSLSFPLLK 661
           TLY+ + KVCKG+LNAV+ D+S  LW+++L H+SEK  +   +    P  K
Sbjct: 393 TLYKTYVKVCKGQLNAVENDASPNLWHRRLAHISEKGLQLLAKQSLIPQAK 443



 Score = 51.2 bits (121), Expect(2) = 6e-33
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +1

Query: 13  CGKEGHMK-NYRAWKRQQXXXXXXXXXXXXXXXTTTVLCSCEAEIL-SMGECLRIGNSSQ 186
           CGK GH+K N R  K++                 TT     E  +L + GEC  I    +
Sbjct: 229 CGKPGHLKKNCRFLKKE---IQDKNQANDRNTAATTSASDDEITLLCNQGECCHIAEPDE 285

Query: 187 GIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
             E + D+ A +H   K E F +Y++ DFG V MGN+S S+ + I D+
Sbjct: 286 --EWIIDSAASYHCVPKREYFTTYRKGDFGHVNMGNKSTSQIVGIGDI 331



 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 40/62 (64%), Positives = 49/62 (79%)
 Frame = +2

Query: 665 F*TFQKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAA 844
           F  FQ+FHA V+RETG+ LKC+R+ N GEY S +F+DYC K+GI+HEKT   TPQHNG A
Sbjct: 519 FQCFQQFHAMVERETGKQLKCIRTDNGGEYISKEFKDYCSKYGIRHEKTVPGTPQHNGIA 578

Query: 845 ER 850
           ER
Sbjct: 579 ER 580


>gb|PKI76236.1| hypothetical protein CRG98_003347 [Punica granatum]
          Length = 255

 Score =  119 bits (298), Expect(2) = 2e-30
 Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 3/145 (2%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           CLET + CKL+LK VR VPE+RLN IS G L+ + Y +   +GR KL  G++++AR +  
Sbjct: 108 CLETELGCKLLLKKVRSVPEIRLNLISTGELNDEGYSNEFSNGRWKLSKGSLIVARGQKT 167

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPL-LKEF*T--FQ 679
            TLYRL A+   G++NA++D   ELW++ LGH SEK     ++   +P+  K+  T  F+
Sbjct: 168 DTLYRLRARHNSGQVNAIEDYPIELWHRILGHSSEKD-DHSRKVWVYPMRTKDQVTDIFK 226

Query: 680 KFHAKVKRETGRSLKCLRSYNDGEY 754
            FH  V+R+TG  LKC+R+ N GEY
Sbjct: 227 NFHVAVERKTGMKLKCVRADNGGEY 251



 Score = 42.7 bits (99), Expect(2) = 2e-30
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
 Frame = +1

Query: 7   HYCGKEGHMKNY-RAWKRQQXXXXXXXXXXXXXXXTTTVLCSCEAEILSMGECLRIGNSS 183
           ++C K+GH K   RA K  +               TTTV    E  I+     +    + 
Sbjct: 5   YHCEKDGHYKRECRALKNNENGNGESKKEKC----TTTVASDGETYIVCDEGYVNF--TC 58

Query: 184 QGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           Q    V D GA FH T   + F SY   D+G V MGN    K + ICD+
Sbjct: 59  QDSTWVADTGASFHVTPHRDFFSSYTTEDYGYVIMGNGQSYKIVGICDV 107


>gb|PHT40220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Capsicum baccatum]
          Length = 512

 Score =  107 bits (266), Expect(2) = 2e-28
 Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 44/193 (22%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           C++T ++C LVL  VRHVPEL+LN IS   LD   YE+Y  + + +L  G + IA+    
Sbjct: 249 CIKTIVECILVLLDVRHVPELQLNLISGIALDRDGYENYFVNKKWRLTKGELAIAKDVGR 308

Query: 509 CTLYRLHAKVCKGELNAVKDS-SSELWYKKLGHMSE--------------------KACK 625
            TLYR +A++  GELN V++  S++LW+ ++GHMSE                    K+C 
Sbjct: 309 GTLYRTNAEIYLGELNVVREEISADLWHIRMGHMSEKGLEILANKSLISFSKCTPAKSCD 368

Query: 626 F----*QRSLSFPLLKE-------------------F*TFQKFHAKVKRETGRSLKCLRS 736
           +     Q  +SF    E                   F  FQKFHA V+RETG+ LK L +
Sbjct: 369 YSLFGKQHRVSFQTSSERKLNILDLVYLDVCGPMEVFQVFQKFHALVERETGQKLKRLHT 428

Query: 737 YNDGEYTSHKFRD 775
            N GEYTS +F +
Sbjct: 429 ENGGEYTSREFEE 441



 Score = 48.1 bits (113), Expect(2) = 2e-28
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +1

Query: 157 ECLRIGNSSQGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           EC+ +  +   +E V D G  +H T   + F  Y   DFGT+KMGN SYSK + I D+
Sbjct: 193 ECMHLAGTE--LEWVVDTGESYHATPVRDFFCKYVADDFGTMKMGNSSYSKIMGIEDI 248


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score =  102 bits (253), Expect(3) = 2e-28
 Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           C++TN+ C LVLK VRHVP+LR+N IS   LD   YE Y  + + +L  G++VIA+    
Sbjct: 339 CIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVAR 398

Query: 509 CTLYRLHAKVCKGELNAVKDS-SSELWYKKLGHMSEK 616
            TLYR +A++C+GELNA +D  S +LW+K++GHMSEK
Sbjct: 399 GTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEK 435



 Score = 45.8 bits (107), Expect(3) = 2e-28
 Identities = 26/58 (44%), Positives = 30/58 (51%)
 Frame = +1

Query: 157 ECLRIGNSSQGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           EC+ +       E V D  A  H T   +LF  Y   DFGTVKMGN SYSK   I D+
Sbjct: 283 ECMHLSGPES--EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDI 338



 Score = 27.3 bits (59), Expect(3) = 2e-28
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +1

Query: 613 EGMQVLTKKSLISFAK 660
           +G+Q+L KKSLIS+AK
Sbjct: 435 KGLQILAKKSLISYAK 450



 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 43/62 (69%), Positives = 47/62 (75%)
 Frame = +2

Query: 665 F*TFQKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAA 844
           F  FQKFHA V+RETGR LK LRS N GEYTS +F +YC  HGI+HEKT   TPQHNG A
Sbjct: 526 FQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVA 585

Query: 845 ER 850
           ER
Sbjct: 586 ER 587


>gb|OMO94644.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1393

 Score =  105 bits (263), Expect(2) = 2e-28
 Identities = 69/192 (35%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
 Frame = +2

Query: 332  LETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCC 511
            ++T+  C L LK VRH+ +LR N +++ +LD + YE     G+ KL  G++++A+  L  
Sbjct: 999  VQTSTGCTLTLKNVRHILDLRTNLLAINVLDKERYESRQKDGQWKLFDGSLLVAKGSLHY 1058

Query: 512  T-------------------LYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*Q 634
                                L  +H+ VC G +       +  +   +   S K   F  
Sbjct: 1059 VQDLHRRVSFHIPATRKENKLELIHSDVC-GPMEGESLRGNRYFVTFIDDASRKTWVFCV 1117

Query: 635  RSLSFPLLKEF*TFQKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTA 814
            R  S  L      FQKF A V+RETG  LKC+R+ N GEYTS+ F  YC K+GI+HE T 
Sbjct: 1118 RYKSQVLH----VFQKFPAMVERETGLPLKCIRTDNVGEYTSNDFVAYCSKYGIRHELTK 1173

Query: 815  SDTPQHNGAAER 850
              TPQHNG A+R
Sbjct: 1174 PVTPQHNGEAKR 1185



 Score = 48.9 bits (115), Expect(2) = 2e-28
 Identities = 26/63 (41%), Positives = 38/63 (60%)
 Frame = +1

Query: 142  ILSMGECLRIGNSSQGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEI 321
            I   G+C  + + S  IE + D GA +H+  K ELF +YK  DFG  +MGN+S S+ + I
Sbjct: 937  ICGHGDCNHVVDPS--IEWIVDTGATYHSVPKRELFTTYKVGDFGETRMGNKSVSQIVGI 994

Query: 322  CDM 330
             D+
Sbjct: 995  GDI 997


>gb|PKI43124.1| hypothetical protein CRG98_036503 [Punica granatum]
          Length = 449

 Score =  119 bits (298), Expect(2) = 6e-28
 Identities = 66/172 (38%), Positives = 97/172 (56%)
 Frame = +2

Query: 332 LETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCC 511
           LET + CKL+LK VR+VP++ LN IS G L+ + Y +   +GR KL   ++++AR +   
Sbjct: 157 LETELGCKLLLKKVRNVPKICLNLISTGQLNDEGYNNKFSNGRWKLSKDSLIMARGQKTD 216

Query: 512 TLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLKEF*TFQKFHA 691
           TLYRL  +   G+++  +D   ++W+++LGH++EK                         
Sbjct: 217 TLYRLRVRHNSGQVDVAEDYLIKIWHRRLGHINEKT------------------------ 252

Query: 692 KVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAE 847
            V+RETG  LKC+RS N GEY    F +YC  HGI+ E+T   TPQ NG  E
Sbjct: 253 -VERETGMKLKCVRSDNGGEYRG-PFENYCRIHGIKLERTVPKTPQQNGLVE 302



 Score = 34.3 bits (77), Expect(2) = 6e-28
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 205 DNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           D  A FH T   + F SY   D+G V+MGN    K + I D+
Sbjct: 114 DTSASFHVTPHWDFFSSYTSEDYGYVRMGNGQSCKIVGIGDV 155


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 99.4 bits (246), Expect(3) = 2e-27
 Identities = 48/97 (49%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           C +TN+ C LVLK VRHVP+LR+N IS   LD   YE+Y  + + +L  G +VIA+    
Sbjct: 340 CFKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVAR 399

Query: 509 CTLYRLHAKVCKGELNAV-KDSSSELWYKKLGHMSEK 616
            TLYR +A++C+GELNA  +++S++LW+K++GH SEK
Sbjct: 400 GTLYRTNAEICQGELNAAHEENSADLWHKRMGHTSEK 436



 Score = 45.1 bits (105), Expect(3) = 2e-27
 Identities = 24/58 (41%), Positives = 31/58 (53%)
 Frame = +1

Query: 157 ECLRIGNSSQGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           EC+ +  +    E V D  A +H T   +LF  Y   D+G VKMGN SYSK   I D+
Sbjct: 284 ECMHLAGTES--EWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDI 339



 Score = 27.3 bits (59), Expect(3) = 2e-27
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +1

Query: 613 EGMQVLTKKSLISFAK 660
           +G+Q+L+KKSLISF K
Sbjct: 436 KGLQILSKKSLISFTK 451



 Score = 88.6 bits (218), Expect = 6e-16
 Identities = 41/62 (66%), Positives = 46/62 (74%)
 Frame = +2

Query: 665 F*TFQKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAA 844
           F  FQKFHA V+RETGR  K LR+ N GEYTS +F +YC  HGI+HEKT   TPQHNG A
Sbjct: 527 FQVFQKFHALVERETGRKRKRLRTDNGGEYTSREFEEYCSNHGIRHEKTVPGTPQHNGVA 586

Query: 845 ER 850
           ER
Sbjct: 587 ER 588


>emb|CAN65281.1| hypothetical protein VITISV_035564 [Vitis vinifera]
          Length = 809

 Score =  121 bits (304), Expect = 3e-27
 Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
 Frame = +2

Query: 332 LETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCC 511
           LET+    L+LK V+H+ ++R+N IS G LD + + +     + KL  G+MV+A+ K C 
Sbjct: 17  LETSNGIMLILKNVKHILDIRMNLISTGKLDDEGFCNTFRDSQWKLTKGSMVVAKGKKCY 76

Query: 512 TLYRLHAKVCKGELNAVKDSSS-ELWYKKLGHMSEKACK-F*QRSLSFPLLKEF*TFQKF 685
           +LY + A+V    +N V D S+ ELW+ +L HMSEK      +++L   + K F      
Sbjct: 77  SLYLMQARVIDSSINVVDDDSTVELWHNRLDHMSEKGLMILAKKNLLSSMKKGF------ 130

Query: 686 HAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
              +KR++G  LKC+R+ N GEY    F +YC +HGI+H+KT   TPQ N  AER
Sbjct: 131 ---LKRQSGEKLKCIRTNNGGEYYG-PFDEYCRQHGIRHQKTPPKTPQLNELAER 181


>gb|PRQ53540.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 321

 Score =  117 bits (292), Expect = 4e-27
 Identities = 55/111 (49%), Positives = 75/111 (67%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           C ET++  KL+LK VR+VP LRLN +S G+LD Q + H+    + +L  G++VIAR K+C
Sbjct: 16  CFETDLGNKLMLKDVRYVPGLRLNLMSTGVLDRQGFHHHGGDQKWRLTKGSLVIARGKMC 75

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLK 661
           CTLY+ + K+CKGELN   DSS  LW+K+LGHMSEK  +   +    P  K
Sbjct: 76  CTLYKTYGKICKGELNVADDSSPSLWHKRLGHMSEKGLQVLAKKSLIPFAK 126



 Score = 98.2 bits (243), Expect = 4e-20
 Identities = 44/62 (70%), Positives = 52/62 (83%)
 Frame = +2

Query: 665 F*TFQKFHAKVKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAA 844
           F TF++FHA V+RETGR+LKC+RS N GEYTS++FRDYC KHGI+H KT   TPQHNG A
Sbjct: 202 FQTFKEFHAMVERETGRTLKCIRSDNGGEYTSNEFRDYCSKHGIKHVKTIPGTPQHNGVA 261

Query: 845 ER 850
           ER
Sbjct: 262 ER 263


>gb|PKI52799.1| hypothetical protein CRG98_026799 [Punica granatum]
          Length = 349

 Score =  115 bits (288), Expect = 3e-26
 Identities = 65/172 (37%), Positives = 91/172 (52%)
 Frame = +2

Query: 335 ETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCCT 514
           ET + C+ ++K VRH+ E+RLN IS G  D + Y +    GR KL   ++++A+ +    
Sbjct: 38  ETELGCRFLMKKVRHILEIRLNLISTGQFDDECYNNEFSSGRWKLSKDSLIVAQGQKTDI 97

Query: 515 LYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPLLKEF*TFQKFHAK 694
           LY+L +K   G++N V+D   ELW+ +LGH+ EKA                         
Sbjct: 98  LYKLRSKYNSGQVNVVEDYPVELWHMRLGHIGEKA------------------------- 132

Query: 695 VKRETGRSLKCLRSYNDGEYTSHKFRDYCVKHGIQHEKTASDTPQHNGAAER 850
           + RET   LKC+   N GEY    F +YC  HGI+ EKT   TPQ NG AER
Sbjct: 133 MDRETSMRLKCVGVDNGGEYMG-PFENYCRTHGIKREKTVLKTPQLNGLAER 183


>gb|PKI61249.1| hypothetical protein CRG98_018348 [Punica granatum]
          Length = 189

 Score =  109 bits (273), Expect = 1e-25
 Identities = 53/109 (48%), Positives = 73/109 (66%)
 Frame = +2

Query: 329 CLETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLC 508
           CLET + CKL+LK VRHVPE+RLN IS G LD + Y +   +GR KL  G +++AR +  
Sbjct: 16  CLETELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNEFSNGRWKLSKGLLIVARGQKT 75

Query: 509 CTLYRLHAKVCKGELNAVKDSSSELWYKKLGHMSEKACKF*QRSLSFPL 655
            TLYRL A+   G++N V+D   ELW+++LGH+SEK  +   R  S P+
Sbjct: 76  DTLYRLRARHNSGQINVVEDYPIELWHRRLGHISEKGIQILARKQSLPV 124


>gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
           capsularis]
          Length = 1500

 Score = 95.9 bits (237), Expect(2) = 9e-25
 Identities = 45/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
 Frame = +2

Query: 332 LETNIDCKLVLKYVRHVPELRLNRISVGMLDLQNYEHYIDHGRPKLITGTMVIARAKLCC 511
           ++T+  C L LK VR +P+LR+N +S+ +LD + YE     G+ KL  G++++A+  LCC
Sbjct: 581 VQTSTGCTLTLKNVRQIPDLRMNLLSINVLDKEGYESRQKDGQWKLFYGSLLVAKGSLCC 640

Query: 512 TLYRLHAKVCKGELNAVKDSSS-ELWYKKLGHMSEKACKF*QRSLSF 649
           T+Y+   K C   +NAV+D +S  LW+ +L H+SEK C F + S SF
Sbjct: 641 TMYKTWLKHCGNNVNAVEDDASPNLWHNRLTHLSEKGCYFWRDSPSF 687



 Score = 47.0 bits (110), Expect(2) = 9e-25
 Identities = 25/59 (42%), Positives = 35/59 (59%)
 Frame = +1

Query: 154 GECLRIGNSSQGIE*VFDNGAFFHTTSKHELFYSYKECDFGTVKMGNESYSKALEICDM 330
           G+C  + + S  IE + D  A +H   K ELF +YK  DFG  +MGN+S S+ L I D+
Sbjct: 523 GDCNHVADPS--IEWIVDISAAYHCVPKRELFTTYKAGDFGETRMGNKSVSQILGIGDI 579