BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00050821
         (367 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAV82842.1| gag_pre-integrs domain-containing protein [Cepha...    53   1e-12
dbj|GAV83405.1| gag_pre-integrs domain-containing protein [Cepha...    52   7e-12
dbj|GAV69795.1| gag_pre-integrs domain-containing protein [Cepha...    50   2e-11
dbj|GAV69956.1| gag_pre-integrs domain-containing protein [Cepha...    50   2e-11
dbj|GAV81274.1| gag_pre-integrs domain-containing protein [Cepha...    51   7e-11
dbj|GAV91597.1| gag_pre-integrs domain-containing protein [Cepha...    47   1e-10
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo...    50   3e-10
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...    47   1e-09
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...    47   1e-09
gb|PKA56982.1| Retrovirus-related Pol polyprotein from transposo...    50   2e-09
dbj|GAV58366.1| LOW QUALITY PROTEIN: gag_pre-integrs domain-cont...    45   2e-08
dbj|GAV72214.1| gag_pre-integrs domain-containing protein/UBN2_2...    46   3e-08
gb|PNX57796.1| putative retrotransposon Ty1-copia subclass prote...    49   6e-08
gb|AAC12735.1| putative retrovirus-related polyprotein, partial ...    47   8e-08
ref|XP_020250324.1| uncharacterized protein LOC109827718 [Aspara...    42   1e-07
gb|KYP40490.1| Retrovirus-related Pol polyprotein from transposo...    47   2e-07
gb|KYP35963.1| Retrovirus-related Pol polyprotein from transposo...    45   9e-07
dbj|GAV61263.1| gag_pre-integrs domain-containing protein/UBN2_2...    44   1e-06
dbj|GAV84070.1| gag_pre-integrs domain-containing protein [Cepha...    54   1e-06
gb|KYP46867.1| Retrovirus-related Pol polyprotein from transposo...    45   2e-06

>dbj|GAV82842.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 165

 Score = 52.8 bits (125), Expect(2) = 1e-12
 Identities = 23/60 (38%), Positives = 42/60 (70%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HM L HMSE   Q+L +K +L G+K  +++FC++  + +Q ++ FS + +K+KG+L+ I+
Sbjct: 89  HMRLGHMSEIWLQILSKKGLLTGVKSGKLDFCEHCVYGKQCRVKFSTTIHKTKGILDYIH 148



 Score = 47.8 bits (112), Expect(2) = 1e-12
 Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAA----EEMD 168
           +G L++ GCKFSG++G + + R + V++K ++   LY L G+ ++G A+ A+    ++ D
Sbjct: 24  LGVLDSHGCKFSGENGIIKVLRGAPVIMKGKKIDGLYELQGNTVLGTAAVASSSGDKDAD 83

Query: 169 NTRL 180
            TRL
Sbjct: 84  TTRL 87


>dbj|GAV83405.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 151

 Score = 52.0 bits (123), Expect(2) = 7e-12
 Identities = 20/60 (33%), Positives = 41/60 (68%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HMHL HMSE+  Q++ +K +L G+K  +++FC++  + +  ++ F  + +K+ G+L+ I+
Sbjct: 89  HMHLGHMSERGLQIMSKKGLLAGVKSGKLHFCEHCVYVKHSRVKFITAIHKTNGILDYIH 148



 Score = 45.8 bits (107), Expect(2) = 7e-12
 Identities = 21/64 (32%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAA----EEMD 168
           +G L++ GCKF+G++G + + + + V++K ++   LY+L G+ ++G A+ A+    ++ D
Sbjct: 24  LGVLDSHGCKFTGENGIIKVLKGALVIMKGKKIDGLYQLQGNTVLGTATVASSSGDKDAD 83

Query: 169 NTRL 180
            TRL
Sbjct: 84  TTRL 87


>dbj|GAV69795.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 163

 Score = 50.1 bits (118), Expect(2) = 2e-11
 Identities = 21/60 (35%), Positives = 41/60 (68%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           H+ L HMSE+  Q++ +K +L G K  +++FC++  + +Q ++  S S +K+KG+L+ I+
Sbjct: 89  HIRLGHMSERELQIMSKKGLLAGAKLGKLDFCEHYVYGKQCRVKISTSIHKTKGILDYIH 148



 Score = 46.6 bits (109), Expect(2) = 2e-11
 Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAA----EEMD 168
           +G L++ GCKFSG++G + + R + V++K ++   LY+L G+ ++G  + A+    ++ D
Sbjct: 24  LGVLDSHGCKFSGENGIIKVFRGALVIMKGKKIDGLYQLQGNTVLGTVAVASSLGDKDAD 83

Query: 169 NTRL 180
            TRL
Sbjct: 84  TTRL 87


>dbj|GAV69956.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 176

 Score = 50.1 bits (118), Expect(2) = 2e-11
 Identities = 21/55 (38%), Positives = 39/55 (70%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGV 347
           H+ L HMSE+  Q+L +K +L G+K  +++FC++  + +Q ++ FS + +KSKG+
Sbjct: 89  HIRLGHMSERGLQILSKKGLLAGVKSGKLDFCEHCVYGKQCRVKFSTAIHKSKGL 143



 Score = 46.2 bits (108), Expect(2) = 2e-11
 Identities = 19/56 (33%), Positives = 38/56 (67%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAAEEMD 168
           +G L++ GCKF+G++G + + R + V++K ++   LY+L G+ ++G A+ A+   D
Sbjct: 24  LGVLDSHGCKFTGENGIIKVLRGALVIMKGKKIDGLYQLQGNAVLGTATVASSSRD 79


>dbj|GAV81274.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 156

 Score = 51.2 bits (121), Expect(2) = 7e-11
 Identities = 22/60 (36%), Positives = 42/60 (70%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HM   HMSE+  Q+L +K +L G+K  +++FC++  + +Q ++ FS + +K+KG+L+ I+
Sbjct: 89  HMCQGHMSERVLQILSKKGLLAGVKSGKLDFCEHCVYGKQCRVKFSTAIHKTKGILDYIH 148



 Score = 43.1 bits (100), Expect(2) = 7e-11
 Identities = 21/64 (32%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAA----EEMD 168
           +G L++ GCKF+G++  + + R + V++K ++   LY+L G+ ++G A+ A+    ++ D
Sbjct: 24  LGVLDSHGCKFTGENEIIKVLRGALVIMKGKKIDGLYQLQGNTVLGIAAVASSSGDKDAD 83

Query: 169 NTRL 180
            TRL
Sbjct: 84  TTRL 87


>dbj|GAV91597.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 177

 Score = 47.4 bits (111), Expect(2) = 1e-10
 Identities = 21/60 (35%), Positives = 40/60 (66%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HM L HMSE+  Q+L +  +L G+K  +++F ++  + +Q ++ FS   +K+KG+L+ I+
Sbjct: 89  HMRLGHMSERGLQILSKMGLLAGVKSGKLDFYEHCVYGKQCRVKFSTVIHKTKGILDYIH 148



 Score = 46.2 bits (108), Expect(2) = 1e-10
 Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAA----EEMD 168
           +G L++ GCK +G++G + + R + V++K E+   LY+L G+ I+G A+ A+    ++ D
Sbjct: 24  LGVLDSHGCKCTGENGIIKVLRGALVIMKGEKIDGLYQLYGNTILGTAAVASSSGDKDAD 83

Query: 169 NTRL 180
            TRL
Sbjct: 84  TTRL 87


>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Capsicum baccatum]
          Length = 1526

 Score = 49.7 bits (117), Expect(2) = 3e-10
 Identities = 22/60 (36%), Positives = 40/60 (66%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAAEEMDNTRL 180
           +G LE+ GC++S + G + +S+ + VL+K  ++ +LY L GS ++G  + A+   DNT+L
Sbjct: 89  LGTLESQGCRYSAEGGVLKVSKGAFVLLKAIRSGSLYLLQGSTVIGSETIASSNKDNTKL 148



 Score = 42.7 bits (99), Expect(2) = 3e-10
 Identities = 22/63 (34%), Positives = 39/63 (61%)
 Frame = +3

Query: 174 KTMHMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLN 353
           K  H+ L HMSEK  Q+L +K  L      +++F ++  + +Q K+SFS + +++KG L+
Sbjct: 147 KLWHLRLGHMSEKGIQILKKKGYLGNHCTGKVDFYEHCIFGKQRKVSFSKAIHRTKGTLD 206

Query: 354 LIY 362
            I+
Sbjct: 207 YIH 209


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1032

 Score = 46.6 bits (109), Expect(2) = 1e-09
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDA--STAAEEMDNT 174
           +G LE+ GCK+S + G + +S+ + VL+K  +  +LY L GSI+ G A  S++  + D T
Sbjct: 63  LGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDAT 122

Query: 175 RL 180
           +L
Sbjct: 123 KL 124



 Score = 43.9 bits (102), Expect(2) = 1e-09
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +3

Query: 174 KTMHMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLN 353
           K  HM L HMSEK   +L ++ +L      ++ FC++  + +Q ++SFS + +++KG L+
Sbjct: 123 KLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLD 182

Query: 354 LIY 362
            I+
Sbjct: 183 YIH 185


>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score = 46.6 bits (109), Expect(2) = 1e-09
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDA--STAAEEMDNT 174
           +G LE+ GCK+S + G + +S+ + VL+K  +  +LY L GSI+ G A  S++  + D T
Sbjct: 359 LGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDAT 418

Query: 175 RL 180
           +L
Sbjct: 419 KL 420



 Score = 43.9 bits (102), Expect(2) = 1e-09
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +3

Query: 174 KTMHMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLN 353
           K  HM L HMSEK   +L ++ +L      ++ FC++  + +Q ++SFS + +++KG L+
Sbjct: 419 KLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLD 478

Query: 354 LIY 362
            I+
Sbjct: 479 YIH 481


>gb|PKA56982.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 143

 Score = 50.4 bits (119), Expect(2) = 2e-09
 Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGD-ASTAAEEMDNTR 177
           +G L+A GC F+G DG + + + + +++K E+  +LYRL+G  I GD A T++ + D+T 
Sbjct: 25  LGTLDASGCTFTGSDGIIKVKKGTLIVMKGEKIGSLYRLIGKTITGDVAVTSSSDDDDTI 84

Query: 178 L 180
           L
Sbjct: 85  L 85



 Score = 38.9 bits (89), Expect(2) = 2e-09
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVL 350
           H  L HMSE+    LH + +L GIK   I+FC+     +Q ++ F  S  +SK +L
Sbjct: 87  HARLGHMSERGLLELHNRKLLKGIKSCTIDFCESCVLGKQCRVKFVTSNKRSKNIL 142


>dbj|GAV58366.1| LOW QUALITY PROTEIN: gag_pre-integrs domain-containing protein,
           partial [Cephalotus follicularis]
          Length = 171

 Score = 44.7 bits (104), Expect(2) = 2e-08
 Identities = 18/56 (32%), Positives = 38/56 (67%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAAEEMD 168
           +G L++ GCKF+ ++G + + R + V++K ++   LY+L G+ ++G A+ A+ + D
Sbjct: 70  LGVLDSHGCKFTSENGIIKVLRSALVIMKGKKIDGLYQLQGNTLLGTAAVASSDKD 125



 Score = 41.6 bits (96), Expect(2) = 2e-08
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKY 284
           HM L HMSE+  Q+L +K +L G+K  ++NFC++
Sbjct: 133 HMRLGHMSERGLQILSKKGLLTGVKSGKLNFCEH 166


>dbj|GAV72214.1| gag_pre-integrs domain-containing protein/UBN2_2 domain-containing
           protein, partial [Cephalotus follicularis]
          Length = 265

 Score = 45.8 bits (107), Expect(2) = 3e-08
 Identities = 22/64 (34%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAA----EEMD 168
           +G L++ GCKF+G++  + + R + V++K ++   LY+L G+I++G A+ A+    ++ D
Sbjct: 165 LGVLDSHGCKFTGENEIIKVLRGALVIMKGKKIDGLYQLQGNIVLGTAAVASSSGDKDAD 224

Query: 169 NTRL 180
            TRL
Sbjct: 225 TTRL 228



 Score = 39.7 bits (91), Expect(2) = 3e-08
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKY 284
           HM L HMSE+  Q+L +K +L G+K  +++FC++
Sbjct: 230 HMRLGHMSERGLQILSKKGLLAGVKSGKLDFCEH 263


>gb|PNX57796.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 285

 Score = 49.3 bits (116), Expect(2) = 6e-08
 Identities = 22/60 (36%), Positives = 39/60 (65%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HM L HMSEK   +L  K +L  ++K  + FC++  + + H++ FS S +KS+G+L+ ++
Sbjct: 62  HMRLGHMSEKGLSLLGEKGLLKNMEKPCMEFCEHCVYGKAHRLRFSSSKHKSRGILDYVH 121



 Score = 35.0 bits (79), Expect(2) = 6e-08
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 22  GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAAEEMDNTRLC 183
           GCK   ++G + + R S V++K  +  NLY L+G  + GD +       +   C
Sbjct: 4   GCKIILENGGLKVVRGSLVVMKGVRHRNLYTLMGETVTGDLAVGINRSKDQTEC 57


>gb|AAC12735.1| putative retrovirus-related polyprotein, partial [Lithospermum
           erythrorhizon]
          Length = 244

 Score = 47.0 bits (110), Expect(2) = 8e-08
 Identities = 21/60 (35%), Positives = 38/60 (63%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HM L HMSEK   +L  + +L  +KK  + FC++  + + H++ F  S +KS+G+L+ ++
Sbjct: 112 HMRLGHMSEKGLSLLSGQGLLKNMKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLLDYVH 171



 Score = 37.0 bits (84), Expect(2) = 8e-08
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +1

Query: 10  LEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGD 141
           LE  GCK   +DG + + R S V++K     NLY LVG+++ GD
Sbjct: 50  LEKNGCKIVLEDGVLKVVRRSLVVMKGVSHGNLYPLVGTMVTGD 93


>ref|XP_020250324.1| uncharacterized protein LOC109827718 [Asparagus officinalis]
          Length = 191

 Score = 42.4 bits (98), Expect(2) = 1e-07
 Identities = 20/60 (33%), Positives = 36/60 (60%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HM L HMSEK   +L ++ +L G     ++FC++  + +Q ++SFS   + +K  L+ I+
Sbjct: 125 HMRLGHMSEKGVTILSKRGLLCGDHTSSLDFCEHCVFGKQTRVSFSTGSHTTKDTLDYIH 184



 Score = 40.8 bits (94), Expect(2) = 1e-07
 Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAAE-EMDNTR 177
           + +L++ GC ++G+ G + +++ S V++K  +  +LY L GS + G AS  ++ + D T+
Sbjct: 63  LSSLDSIGCSYTGEGGALRVTKGSLVVMKGSKVNSLYVLQGSTVTGSASVYSDVDRDTTQ 122

Query: 178 L 180
           L
Sbjct: 123 L 123


>gb|KYP40490.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 457

 Score = 46.6 bits (109), Expect(2) = 2e-07
 Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDAS---TAAEEMDN 171
           +G L+  G  FSG+DG +T+S+   V++K +    +Y ++G+   G  S   +  +++DN
Sbjct: 310 IGILDKQGYNFSGNDGQITVSKGVLVVMKGKLQHEIYVMLGNSFQGTVSISHSLEQQVDN 369

Query: 172 TRLCIC 189
           T+LC C
Sbjct: 370 TKLCHC 375



 Score = 35.8 bits (81), Expect(2) = 2e-07
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 174 KTMHMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLN 353
           K  H  L HMSE+   VL ++ +L G    ++ FC+     +Q ++ FS   + S  +L 
Sbjct: 371 KLCHCRLGHMSERGLAVLSKQGLLGGAVTGKLKFCESCVMGKQRRLKFSHGKHTSTEILQ 430

Query: 354 LIY 362
            ++
Sbjct: 431 YVH 433


>gb|KYP35963.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 255

 Score = 44.7 bits (104), Expect(2) = 9e-07
 Identities = 18/67 (26%), Positives = 39/67 (58%)
 Frame = +3

Query: 162 DGQHKTMHMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSK 341
           D   +  H+ L H+SEK  + LH++ +  G K ++++FC++  + +Q K  F    + +K
Sbjct: 118 DNSIRLWHLRLAHISEKEFEELHKQGLFEGTKYKKLDFCEHCLYGKQKKAKFPTGTHNTK 177

Query: 342 GVLNLIY 362
            +L+ ++
Sbjct: 178 EILDYVH 184



 Score = 35.8 bits (81), Expect(2) = 9e-07
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAAEEMDNT 174
           +G L   GC F+G+   + I R S  ++K  +   LYRL G  IV  A++     DN+
Sbjct: 63  LGMLGEVGCVFNGESDAIVIKRGSKKIMKGIRQDGLYRLQGKTIVNPANSCFVFKDNS 120


>dbj|GAV61263.1| gag_pre-integrs domain-containing protein/UBN2_2 domain-containing
           protein, partial [Cephalotus follicularis]
          Length = 265

 Score = 43.5 bits (101), Expect(2) = 1e-06
 Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDASTAA----EEMD 168
           +G L++ GCKF+G +G + + + + V++K  +   LY+L G+ ++G A+ A+    ++ D
Sbjct: 162 LGVLDSHGCKFTGKNGIIKVLKGALVIMKGMKIDGLYQLQGNTVLGTAAVASSLRDKDAD 221

Query: 169 NTRL 180
            TRL
Sbjct: 222 TTRL 225



 Score = 36.6 bits (83), Expect(2) = 1e-06
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKY 284
           HM L HMSE+  Q+L +K +L  +K  +++FC++
Sbjct: 227 HMRLGHMSERGLQILSKKGLLARVKSGKLDFCEH 260


>dbj|GAV84070.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 131

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 43/60 (71%)
 Frame = +3

Query: 183 HMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLNLIY 362
           HM L H+SE+  Q+L +K +L G+K  +++FC++  + +Q ++ FS + +K+KG+L+ I+
Sbjct: 39  HMRLGHLSERGLQILSKKGLLAGVKSGKLDFCEHCVYGKQCRVKFSTAIHKTKGILDYIH 98


>gb|KYP46867.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 253

 Score = 45.1 bits (105), Expect(2) = 2e-06
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
 Frame = +1

Query: 1   VGALEA*GCKFSGDDGNVTISRDSTVLIKEEQTMNLYRLVGSIIVGDAS---TAAEEMDN 171
           +GAL+  G  FSG+DG++T+S+ + V++K +    +Y ++G+   G  S   +  + +DN
Sbjct: 44  IGALDKQGYSFSGNDGHITVSKGALVVMKGKLQHGIYVMLGNSFQGTVSISHSIEQHVDN 103

Query: 172 TRLCIC 189
           T+L  C
Sbjct: 104 TKLWHC 109



 Score = 34.3 bits (77), Expect(2) = 2e-06
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 174 KTMHMHLEHMSEKRRQVLHRKDVLLGIKKRRINFCKYG*WKRQHKISFSFSPYKSKGVLN 353
           K  H  L HMSE+   VL ++ +L G    ++ FC+     +Q ++ F+   + S  +L 
Sbjct: 105 KLWHCRLGHMSERGLVVLSKQGLLGGAVTGKLKFCESCVMGKQRRLKFNHGKHTSTEILQ 164

Query: 354 LIY 362
            ++
Sbjct: 165 YVH 167