BLASTX nr result

ID: Ophiopogon25_contig00048357 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00048357
         (553 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKY37646.1| hypothetical protein RhiirA4_238596 [Rhizophagus ...    70   6e-13
gb|PKY50874.1| hypothetical protein RhiirA4_467566 [Rhizophagus ...    59   7e-08

>gb|PKY37646.1| hypothetical protein RhiirA4_238596 [Rhizophagus irregularis]
          Length = 68

 Score = 70.5 bits (171), Expect = 6e-13
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = +1

Query: 316 RWNLRLTHLVLKQHTVLNPYDKLNPTIIKCIQQVPEKDI 432
           R  L+ THLVLKQHTVLNPYDKLNPTIIKC+QQVPEK I
Sbjct: 9   RDTLQTTHLVLKQHTVLNPYDKLNPTIIKCVQQVPEKYI 47


>gb|PKY50874.1| hypothetical protein RhiirA4_467566 [Rhizophagus irregularis]
          Length = 116

 Score = 58.5 bits (140), Expect = 7e-08
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
 Frame = +1

Query: 229 KLPVNYRRLYYKEYSSLRFDVVHSKQQVERWNLRLTHLVLK-QH-----TVLNPYDKLNP 390
           +L  + +R YYKEYS LRFD+VHS QQ+ERWN R+T   L  +H     + L   +   P
Sbjct: 40  RLNTDVQRPYYKEYSRLRFDIVHSPQQIERWN-RITRSTLNLEHKKPIISHLPSGNSPRP 98

Query: 391 TIIKCIQQVPEKDIP 435
            + K I  VPEK +P
Sbjct: 99  LVFKQIHHVPEKFLP 113


Top