BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00038767
         (541 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...    60   3e-18
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo...    65   3e-18
gb|PKI73973.1| hypothetical protein CRG98_005590 [Punica granatum]     55   7e-17
dbj|GAV69956.1| gag_pre-integrs domain-containing protein [Cepha...    70   2e-16
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    57   3e-16
dbj|GAV91597.1| gag_pre-integrs domain-containing protein [Cepha...    73   3e-16
gb|PKA56982.1| Retrovirus-related Pol polyprotein from transposo...    55   9e-16
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo...    62   1e-15
gb|KYP35963.1| Retrovirus-related Pol polyprotein from transposo...    53   8e-15
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    45   9e-15
gb|KYP37885.1| Retrovirus-related Pol polyprotein from transposo...    61   1e-14
ref|XP_020250324.1| uncharacterized protein LOC109827718 [Aspara...    62   2e-14
ref|XP_016457574.1| PREDICTED: uncharacterized mitochondrial pro...    63   3e-14
dbj|GAV84070.1| gag_pre-integrs domain-containing protein [Cepha...    71   9e-14
dbj|GAV82842.1| gag_pre-integrs domain-containing protein [Cepha...    68   2e-13
dbj|GAV81274.1| gag_pre-integrs domain-containing protein [Cepha...    65   2e-13
dbj|GAV69795.1| gag_pre-integrs domain-containing protein [Cepha...    63   2e-13
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    59   3e-13
gb|PKA55182.1| Retrovirus-related Pol polyprotein from transposo...    51   8e-13
gb|PNX57796.1| putative retrotransposon Ty1-copia subclass prote...    60   1e-12

>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score = 60.5 bits (145), Expect(4) = 3e-18
 Identities = 27/60 (45%), Positives = 40/60 (66%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H+R+ H  +K LQ+L  + +L G K  KL+F E CV  +QRR+ F T+ H +KG+LD +H
Sbjct: 361 HMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVH 420



 Score = 40.8 bits (94), Expect(4) = 3e-18
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +3

Query: 6   IRSPDD*NMTLSGVRYVPDLKKDLLSLGALETQGCIFSGED 128
           +R+ D     L  VRYVP LKK+L+SLGALE++G + +  D
Sbjct: 270 LRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRD 310



 Score = 34.7 bits (78), Expect(4) = 3e-18
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKVWIY 536
           G +    IG   YFVTF+ DF R+VW++
Sbjct: 425 GPAKTPSIGGRHYFVTFVDDFSRRVWVF 452



 Score = 22.7 bits (47), Expect(4) = 3e-18
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 145 LETTVLLKGE*TRNLHRLV*SVIVGDVSAA 234
           L   V+LKG    NL+    S +VG V+AA
Sbjct: 317 LGALVMLKGVMKNNLYYYQGSTVVGTVAAA 346


>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 365

 Score = 65.1 bits (157), Expect(3) = 3e-18
 Identities = 30/60 (50%), Positives = 41/60 (68%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H R+ HMS++GL  LH + +L GIK  K+DF EFCV  +Q R+ F TS  KSK +L+ +H
Sbjct: 303 HARLGHMSERGLLELHNRKLLKGIKSCKIDFCEFCVLGKQCRVKFVTSNKKSKNILEYVH 362



 Score = 45.1 bits (105), Expect(3) = 3e-18
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +3

Query: 33  TLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           TL+ VR+VPDL+K L+SLG L+  GC F G D  + V +
Sbjct: 224 TLTEVRHVPDLRKGLISLGTLDASGCTFIGSDGIIKVKK 262



 Score = 28.9 bits (63), Expect(3) = 3e-18
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 157 VLLKGE*TRNLHRLV*SVIVGDVSAAVDKEDNTRLAYTCR 276
           V++KGE   +L+RL+   I GD++     +D+  + +  R
Sbjct: 266 VVMKGEKIESLYRLIGKTITGDIAVTSSTDDDDTMLWHAR 305


>gb|PKI73973.1| hypothetical protein CRG98_005590 [Punica granatum]
          Length = 272

 Score = 54.7 bits (130), Expect(3) = 7e-17
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = +2

Query: 251 TQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVL 430
           TQ  H+ + HMS+ G+ +L    +L   K  KLDF+E C   RQ+R+ F TS H ++G L
Sbjct: 96  TQLWHMHLGHMSEAGMIILSKIGLLPSPKVRKLDFFEHCFYGRQKRVSFGTSVHGARGTL 155

Query: 431 DLIH 442
           D IH
Sbjct: 156 DYIH 159



 Score = 40.0 bits (92), Expect(3) = 7e-17
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = +3

Query: 6   IRSPDD*NMTLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVS 146
           IR  D    TLS V+++PDL K+L SLG L++ GC    E  ++ VS
Sbjct: 37  IRMHDGVIKTLSDVKHIPDLMKNLFSLGVLDSNGCKVVIESNSMKVS 83



 Score = 39.7 bits (91), Expect(3) = 7e-17
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKVWIYF 539
           G +PVT  G  +Y +TFI D+ +KVW+YF
Sbjct: 164 GPAPVTSKGGRKYLLTFINDYSKKVWVYF 192


>dbj|GAV69956.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 176

 Score = 70.1 bits (170), Expect(3) = 2e-16
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = +2

Query: 248 TTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGV 427
           TT+  HIR+ HMS++GLQ+L  K +L G+K  KLDF E CV  +Q R+ FST+ HKSKG 
Sbjct: 84  TTRFWHIRLGHMSERGLQILSKKGLLAGVKSGKLDFCEHCVYGKQCRVKFSTAIHKSKG- 142

Query: 428 LDLIH 442
           LD IH
Sbjct: 143 LDYIH 147



 Score = 38.9 bits (89), Expect(3) = 2e-16
 Identities = 17/33 (51%), Positives = 25/33 (75%)
 Frame = +3

Query: 51  YVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           +VP LKK+L+SLG L++ GC F+GE+  + V R
Sbjct: 13  HVPGLKKNLISLGVLDSHGCKFTGENGIIKVLR 45



 Score = 23.9 bits (50), Expect(3) = 2e-16
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKV 527
           G S    +G +RY +T + D+ RKV
Sbjct: 152 GPSSQLSLGGSRYLMTLMDDYSRKV 176


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 57.4 bits (137), Expect(3) = 3e-16
 Identities = 28/60 (46%), Positives = 38/60 (63%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H R+ HMS+KGL +L  + +L G +  KL F E CV  +QRR+ FS   H + GVL+ IH
Sbjct: 749 HRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIH 808



 Score = 42.0 bits (97), Expect(3) = 3e-16
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKVWIYF 539
           G SPV      RY+VTFI DF RKVW+YF
Sbjct: 813 GPSPVESHSGCRYYVTFIDDFSRKVWVYF 841



 Score = 33.1 bits (74), Expect(3) = 3e-16
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 51  YVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           YVP L+K+L+S+G L+  G  FSG    + VS+
Sbjct: 679 YVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSK 711


>dbj|GAV91597.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 177

 Score = 73.2 bits (178), Expect(3) = 3e-16
 Identities = 35/65 (53%), Positives = 47/65 (72%)
 Frame = +2

Query: 248 TTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGV 427
           TT+  H+R+ HMS++GLQ+L    +L G+K  KLDFYE CV  +Q R+ FST  HK+KG+
Sbjct: 84  TTRLWHMRLGHMSERGLQILSKMGLLAGVKSGKLDFYEHCVYGKQCRVKFSTVIHKTKGI 143

Query: 428 LDLIH 442
           LD IH
Sbjct: 144 LDYIH 148



 Score = 35.8 bits (81), Expect(3) = 3e-16
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +3

Query: 51  YVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           +VP LKK+L+SLG L++ GC  +GE+  + V R
Sbjct: 13  HVPGLKKNLISLGVLDSHGCKCTGENGIIKVLR 45



 Score = 23.5 bits (49), Expect(3) = 3e-16
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKV 527
           G S    +G +RY +  I D+ RKV
Sbjct: 153 GPSSQVSLGGSRYLMALIDDYSRKV 177


>gb|PKA56982.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 143

 Score = 54.7 bits (130), Expect(3) = 9e-16
 Identities = 26/57 (45%), Positives = 37/57 (64%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLD 433
           H R+ HMS++GL  LH + +L GIK   +DF E CV  +Q R+ F TS  +SK +L+
Sbjct: 87  HARLGHMSERGLLELHNRKLLKGIKSCTIDFCESCVLGKQCRVKFVTSNKRSKNILE 143



 Score = 46.2 bits (108), Expect(3) = 9e-16
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +3

Query: 33  TLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           TL+ VR+VPDL+K L+SLG L+  GC F+G D  + V +
Sbjct: 8   TLTEVRHVPDLRKGLISLGTLDASGCTFTGSDGIIKVKK 46



 Score = 30.0 bits (66), Expect(3) = 9e-16
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 151 TTVLLKGE*TRNLHRLV*SVIVGDVSAAVDKEDNTRLAYTCR 276
           T +++KGE   +L+RL+   I GDV+     +D+  + +  R
Sbjct: 48  TLIVMKGEKIGSLYRLIGKTITGDVAVTSSSDDDDTILWHAR 89


>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Capsicum baccatum]
          Length = 1526

 Score = 62.0 bits (149), Expect(2) = 1e-15
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H+R+ HMS+KG+Q+L  K  L      K+DFYE C+  +QR++ FS + H++KG LD IH
Sbjct: 150 HLRLGHMSEKGIQILKKKGYLGNHCTGKVDFYEHCIFGKQRKVSFSKAIHRTKGTLDYIH 209



 Score = 48.1 bits (113), Expect(2) = 1e-15
 Identities = 22/39 (56%), Positives = 31/39 (79%)
 Frame = +3

Query: 33  TLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           TL+ VR+VPDLK++L+SLG LE+QGC +S E   + VS+
Sbjct: 72  TLTSVRHVPDLKRNLISLGTLESQGCRYSAEGGVLKVSK 110


>gb|KYP35963.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 255

 Score = 53.1 bits (126), Expect(3) = 8e-15
 Identities = 23/60 (38%), Positives = 37/60 (61%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H+R+ H+S+K  + LH + +  G K  KLDF E C+  +Q++  F T  H +K +LD +H
Sbjct: 125 HLRLAHISEKEFEELHKQGLFEGTKYKKLDFCEHCLYGKQKKAKFPTGTHNTKEILDYVH 184



 Score = 41.2 bits (95), Expect(3) = 8e-15
 Identities = 17/39 (43%), Positives = 28/39 (71%)
 Frame = +3

Query: 33  TLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           T + VR+V +LK++L+SLG L   GC+F+GE + + + R
Sbjct: 46  TFTKVRHVLELKRNLISLGMLGEVGCVFNGESDAIVIKR 84



 Score = 33.1 bits (74), Expect(3) = 8e-15
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKVWIY 536
           G +    +G ARY+++FI    RKVWIY
Sbjct: 189 GPAKTQSLGGARYYISFIDHLSRKVWIY 216


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 44.7 bits (104), Expect(3) = 9e-15
 Identities = 25/65 (38%), Positives = 37/65 (56%)
 Frame = +2

Query: 248 TTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGV 427
           TT+  H R+ H+S +GLQ L  + VL   K   L F E CV  +  R+ F+ + H+++  
Sbjct: 390 TTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQ 449

Query: 428 LDLIH 442
           LD IH
Sbjct: 450 LDYIH 454



 Score = 42.0 bits (97), Expect(3) = 9e-15
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKVWIYF 539
           G S V  IG ARYF+T I D+ RKVWIYF
Sbjct: 459 GPSRVPSIGGARYFLTLIDDYSRKVWIYF 487



 Score = 40.4 bits (93), Expect(3) = 9e-15
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +3

Query: 6   IRSPDD*NMTLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           I+  D     L  VRY+P+LK++L+SLG L+  G  F  E  ++ V+R
Sbjct: 307 IKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVAR 354


>gb|KYP37885.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 464

 Score = 61.2 bits (147), Expect(3) = 1e-14
 Identities = 27/60 (45%), Positives = 39/60 (65%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H+R+ H+S+KGL+ LH + +L G    KLDF E C+  +Q R  F  S H +KG+LD +H
Sbjct: 92  HLRLSHISEKGLEELHKQGLLKGTNYEKLDFCEHCLYGKQERAKFPASTHNTKGILDYVH 151



 Score = 33.5 bits (75), Expect(3) = 1e-14
 Identities = 15/35 (42%), Positives = 25/35 (71%)
 Frame = +3

Query: 45  VRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           VR+VP+LK++L+SLG L     +F+GE + + + R
Sbjct: 30  VRHVPELKRNLISLGML-----VFNGESDAIVIKR 59



 Score = 32.0 bits (71), Expect(3) = 1e-14
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKVWIY 536
           G +    IG  RY+++FI D+  K+WIY
Sbjct: 156 GPTKTQSIGGVRYYISFIDDWSTKMWIY 183


>ref|XP_020250324.1| uncharacterized protein LOC109827718 [Asparagus officinalis]
          Length = 191

 Score = 61.6 bits (148), Expect(2) = 2e-14
 Identities = 31/67 (46%), Positives = 41/67 (61%)
 Frame = +2

Query: 242 RKTTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSK 421
           R TTQ  H+R+ HMS+KG+ +L  + +L G     LDF E CV  +Q R+ FST  H +K
Sbjct: 118 RDTTQLWHMRLGHMSEKGVTILSKRGLLCGDHTSSLDFCEHCVFGKQTRVSFSTGSHTTK 177

Query: 422 GVLDLIH 442
             LD IH
Sbjct: 178 DTLDYIH 184



 Score = 45.1 bits (105), Expect(2) = 2e-14
 Identities = 21/48 (43%), Positives = 35/48 (72%)
 Frame = +3

Query: 6   IRSPDD*NMTLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           IR  D+   TLS +R++PDLKK+L+SL +L++ GC ++GE   + V++
Sbjct: 37  IRYHDEIVRTLSDMRHIPDLKKNLISLSSLDSIGCSYTGEGGALRVTK 84


>ref|XP_016457574.1| PREDICTED: uncharacterized mitochondrial protein AtMg00300-like
           [Nicotiana tabacum]
          Length = 202

 Score = 63.2 bits (152), Expect(3) = 3e-14
 Identities = 29/60 (48%), Positives = 43/60 (71%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H+R+ HMS +GL++L  + +L G K   LDF E CV  +Q+++ FST +HK++GVLD IH
Sbjct: 126 HMRLGHMSARGLEMLSNRTLLEGEKINTLDFCEHCVLGKQKKVSFSTGKHKTRGVLDYIH 185



 Score = 38.5 bits (88), Expect(3) = 3e-14
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +3

Query: 6   IRSPDD*NMTLSGVRYVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           +R  D    T++ VR+VPDLKK+L+SL  L+ QG  +  E   + V++
Sbjct: 36  VRCHDGVVRTITQVRHVPDLKKNLISLSTLDEQGYRYMSEAGTIKVTK 83



 Score = 23.9 bits (50), Expect(3) = 3e-14
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 VLLKGE*TRNLHRLV*SVIVGDVSAA---VDKEDNTRL 261
           V+LKG+    L+ L  S IVG  +A+   +  +D  RL
Sbjct: 87  VMLKGKLENGLYTLAGSTIVGSANASTVQLSNDDKARL 124


>dbj|GAV84070.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 131

 Score = 71.2 bits (173), Expect(2) = 9e-14
 Identities = 34/65 (52%), Positives = 47/65 (72%)
 Frame = +2

Query: 248 TTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGV 427
           TT   H+R+ H+S++GLQ+L  K +L G+K  KLDF E CV  +Q R+ FST+ HK+KG+
Sbjct: 34  TTPLWHMRLGHLSERGLQILSKKGLLAGVKSGKLDFCEHCVYGKQCRVKFSTAIHKTKGI 93

Query: 428 LDLIH 442
           LD IH
Sbjct: 94  LDYIH 98



 Score = 33.1 bits (74), Expect(2) = 9e-14
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 474 IGSARYFVTFIGDFFRKVWIYF 539
           +G +RY +T I D+ RKVW YF
Sbjct: 110 LGGSRYLMTLIDDYSRKVWTYF 131


>dbj|GAV82842.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 165

 Score = 68.2 bits (165), Expect(2) = 2e-13
 Identities = 34/65 (52%), Positives = 46/65 (70%)
 Frame = +2

Query: 248 TTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGV 427
           TT+  H+R+ HMS+  LQ+L  K +L G+K  KLDF E CV  +Q R+ FST+ HK+KG+
Sbjct: 84  TTRLWHMRLGHMSEIWLQILSKKGLLTGVKSGKLDFCEHCVYGKQCRVKFSTTIHKTKGI 143

Query: 428 LDLIH 442
           LD IH
Sbjct: 144 LDYIH 148



 Score = 35.0 bits (79), Expect(2) = 2e-13
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 51  YVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           +V  LKK+L+ LG L++ GC FSGE+  + V R
Sbjct: 13  HVQGLKKNLIPLGVLDSHGCKFSGENGIIKVLR 45


>dbj|GAV81274.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 156

 Score = 65.5 bits (158), Expect(2) = 2e-13
 Identities = 33/65 (50%), Positives = 45/65 (69%)
 Frame = +2

Query: 248 TTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGV 427
           TT+  H+   HMS++ LQ+L  K +L G+K  KLDF E CV  +Q R+ FST+ HK+KG+
Sbjct: 84  TTRLWHMCQGHMSERVLQILSKKGLLAGVKSGKLDFCEHCVYGKQCRVKFSTAIHKTKGI 143

Query: 428 LDLIH 442
           LD IH
Sbjct: 144 LDYIH 148



 Score = 37.7 bits (86), Expect(2) = 2e-13
 Identities = 17/33 (51%), Positives = 25/33 (75%)
 Frame = +3

Query: 51  YVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           +V  LKK+L+SLG L++ GC F+GE+E + V R
Sbjct: 13  HVLGLKKNLISLGVLDSHGCKFTGENEIIKVLR 45


>dbj|GAV69795.1| gag_pre-integrs domain-containing protein [Cephalotus follicularis]
          Length = 163

 Score = 62.8 bits (151), Expect(2) = 2e-13
 Identities = 33/65 (50%), Positives = 44/65 (67%)
 Frame = +2

Query: 248 TTQD*HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGV 427
           TT+  HIR+ HMS++ LQ++  K +L G K  KLDF E  V  +Q R+  STS HK+KG+
Sbjct: 84  TTRLWHIRLGHMSERELQIMSKKGLLAGAKLGKLDFCEHYVYGKQCRVKISTSIHKTKGI 143

Query: 428 LDLIH 442
           LD IH
Sbjct: 144 LDYIH 148



 Score = 40.0 bits (92), Expect(2) = 2e-13
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +3

Query: 51  YVPDLKKDLLSLGALETQGCIFSGEDENVTVSR 149
           +VP LKK+L+SLG L++ GC FSGE+  + V R
Sbjct: 13  HVPGLKKNLISLGVLDSHGCKFSGENGIIKVFR 45


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 58.9 bits (141), Expect(3) = 3e-13
 Identities = 26/60 (43%), Positives = 39/60 (65%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H+R+ H  +K LQ+   + +L G K  KL+F E CV  +QRR+ F T+ H +KG+LD +H
Sbjct: 362 HMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVH 421



 Score = 40.8 bits (94), Expect(3) = 3e-13
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +3

Query: 6   IRSPDD*NMTLSGVRYVPDLKKDLLSLGALETQGCIFSGED 128
           +R+ D     L  VRYVP LKK+L+SLGALE++G + +  D
Sbjct: 271 LRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRD 311



 Score = 22.3 bits (46), Expect(3) = 3e-13
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 157 VLLKGE*TRNLHRLV*SVIVGDVSAA 234
           V+LKG    NL+    S +VG V+AA
Sbjct: 322 VMLKGVMKNNLYYYQGSTVVGTVAAA 347


>gb|PKA55182.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 286

 Score = 51.2 bits (121), Expect(2) = 8e-13
 Identities = 24/54 (44%), Positives = 35/54 (64%)
 Frame = +2

Query: 281 MSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           MS++GL  LH + +L GIK  K+DF E CV  +Q R+ F TS  +SK + + +H
Sbjct: 1   MSERGLLELHNRKLLKGIKLCKIDFCESCVLSKQCRVKFITSNKRSKNISEYVH 54



 Score = 49.7 bits (117), Expect(2) = 8e-13
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +3

Query: 453 GHSPVTYIGSARYFVTFIGDFFRKVWIYF 539
           G SPVT +G A+YFVTFI D+ RKVW+YF
Sbjct: 59  GPSPVTSLGGAKYFVTFIDDYLRKVWVYF 87


>gb|PNX57796.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 285

 Score = 60.1 bits (144), Expect(2) = 1e-12
 Identities = 27/60 (45%), Positives = 43/60 (71%)
 Frame = +2

Query: 263 HIRVEHMSKKGLQVLHGKDVLLGIKKFKLDFYEFCVGERQRRIPFSTSQHKSKGVLDLIH 442
           H+R+ HMS+KGL +L  K +L  ++K  ++F E CV  +  R+ FS+S+HKS+G+LD +H
Sbjct: 62  HMRLGHMSEKGLSLLGEKGLLKNMEKPCMEFCEHCVYGKAHRLRFSSSKHKSRGILDYVH 121



 Score = 40.4 bits (93), Expect(2) = 1e-12
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +3

Query: 438 YTNA*GHSPVTYIGSARYFVTFIGDFFRKVWIYF 539
           +T+  G +PVT  G +RYFVT++ D  R  WIYF
Sbjct: 121 HTDVWGPAPVTSKGGSRYFVTYVDDHSRYAWIYF 154