BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00034965
         (494 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]           41   4e-06

>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score = 40.8 bits (94), Expect(2) = 4e-06
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +3

Query: 381 DLIHSGTCDYKRFASRRDEKYFITFIDNHSRH 476
           DLIHS  CD+K   +R   KYFITFID+ +++
Sbjct: 518 DLIHSDICDFKSIQTRGGNKYFITFIDDCTKY 549



 Score = 37.4 bits (85), Expect(2) = 4e-06
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
 Frame = +1

Query: 139 YLTEGMYKTRNINYALVINK----ASVFVCSSSLWHHRL--L*KDAMQKL---KLLSNFG 291
           Y+ +G++K   +     IN     ++  + SS++WH RL  +  ++++KL   K + NF 
Sbjct: 428 YVNDGLFKLNVMTLKPTINNKATSSAYLLESSNIWHGRLGHVNFNSLRKLINMKHIPNFQ 487

Query: 292 DDKLSRCEV-YQTKITRKSFPRVTRNTQTCSILYT 393
            D   +C+   + K+TR SF  + RN++   ++++
Sbjct: 488 IDLKHKCKTCVEAKLTRSSFQIIQRNSEPLDLIHS 522