BLASTX nr result

ID: Ophiopogon25_contig00032533 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00032533
         (400 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OAY85794.1| AP-3 complex subunit delta [Ananas comosus]             57   7e-07
ref|XP_018679926.1| PREDICTED: AP-3 complex subunit delta-like, ...    55   5e-06
ref|XP_010907010.1| PREDICTED: AP-3 complex subunit delta-like [...    54   9e-06

>gb|OAY85794.1| AP-3 complex subunit delta [Ananas comosus]
          Length = 938

 Score = 57.4 bits (137), Expect = 7e-07
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = -1

Query: 115 SLSFFPAVELLASPSAPHKRSAYLFASLHFHPSSTDLL 2
           S++ FPA+ELLASPS   KR+AYLFA LH HPS TDLL
Sbjct: 92  SIAAFPALELLASPSLAFKRAAYLFACLHLHPSGTDLL 129


>ref|XP_018679926.1| PREDICTED: AP-3 complex subunit delta-like, partial [Musa acuminata
           subsp. malaccensis]
          Length = 957

 Score = 55.1 bits (131), Expect = 5e-06
 Identities = 39/101 (38%), Positives = 42/101 (41%)
 Frame = -1

Query: 304 FQRTLDDLIRXXXXXXXXXXXXXXXXXXXXXXXXXXSPDPATXXXXXXXXXXXXXXXXXX 125
           FQR+LDDLIR                             P                    
Sbjct: 34  FQRSLDDLIRSLRSSSSSSVLEAAAITRALDEIRREIRSPDLDTKAVALQKLTYLASLHH 93

Query: 124 LDPSLSFFPAVELLASPSAPHKRSAYLFASLHFHPSSTDLL 2
           LD S + F A+ELL SPS PH R AYL ASL FHPSSTDLL
Sbjct: 94  LDMSWAAFHALELLPSPSLPHPRVAYLAASLSFHPSSTDLL 134


>ref|XP_010907010.1| PREDICTED: AP-3 complex subunit delta-like [Elaeis guineensis]
          Length = 1022

 Score = 54.3 bits (129), Expect = 9e-06
 Identities = 39/101 (38%), Positives = 45/101 (44%)
 Frame = -1

Query: 304 FQRTLDDLIRXXXXXXXXXXXXXXXXXXXXXXXXXXSPDPATXXXXXXXXXXXXXXXXXX 125
           FQR+LDDLI+                          SPDP T                  
Sbjct: 73  FQRSLDDLIKSLRSQPASAEPVLLSRALAEIRREIRSPDPDTKAVALQKLTYLSSIHGL- 131

Query: 124 LDPSLSFFPAVELLASPSAPHKRSAYLFASLHFHPSSTDLL 2
            D S + F A+ELL SPS  HKR AYL ASL FHPS+TD+L
Sbjct: 132 -DASWAAFHALELLPSPSPLHKRLAYLAASLSFHPSTTDVL 171


Top