BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00031038
         (692 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AQK94585.1| Nuclear pore complex protein NUP205 [Zea mays] >g...    47   1e-05

>gb|AQK94585.1| Nuclear pore complex protein NUP205 [Zea mays]
 gb|AQK94592.1| Nuclear pore complex protein NUP205 [Zea mays]
 gb|AQK94593.1| Nuclear pore complex protein NUP205 [Zea mays]
 gb|AQK94596.1| Nuclear pore complex protein NUP205 [Zea mays]
 gb|AQK94599.1| Nuclear pore complex protein NUP205 [Zea mays]
          Length = 331

 Score = 47.4 bits (111), Expect(2) = 1e-05
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
 Frame = -1

Query: 482 K*RSSSAILCISRIPIQLNGRFYRKAMRPTMLYGLVLGN*ETCP-------KISFSEMRM 324
           K R ++ +LC  R+P +L G+FYR A+RP MLYG      E  P       ++S +EMRM
Sbjct: 171 KKREAACVLCDPRVPHKLKGKFYRTAIRPAMLYGA-----ECWPTKRRHVQQLSVAEMRM 225

Query: 323 LR 318
           LR
Sbjct: 226 LR 227



 Score = 30.4 bits (67), Expect(2) = 1e-05
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 516 DVVHRINAGWLKVKEFVC 463
           DV HRI AGWLK +E  C
Sbjct: 160 DVSHRIKAGWLKKREAAC 177