BLASTX nr result
ID: Ophiopogon25_contig00031007
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00031007
(1328 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008784554.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 84 2e-13
ref|XP_008808984.1| PREDICTED: polyadenylation and cleavage fact... 79 1e-11
ref|XP_008808980.1| PREDICTED: polyadenylation and cleavage fact... 79 1e-11
ref|XP_010931817.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 75 1e-10
ref|XP_010909642.1| PREDICTED: polyadenylation and cleavage fact... 73 8e-10
ref|XP_009399217.1| PREDICTED: polyadenylation and cleavage fact... 63 1e-06
ref|XP_009399215.1| PREDICTED: polyadenylation and cleavage fact... 63 1e-06
ref|XP_010275999.1| PREDICTED: polyadenylation and cleavage fact... 60 7e-06
ref|XP_010275998.1| PREDICTED: polyadenylation and cleavage fact... 60 8e-06
>ref|XP_008784554.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylation and cleavage factor
homolog 4-like [Phoenix dactylifera]
Length = 1063
Score = 84.0 bits (206), Expect = 2e-13
Identities = 90/331 (27%), Positives = 140/331 (42%), Gaps = 86/331 (25%)
Frame = +2
Query: 29 SLLSYGHKSSVRCGEYDHEDHELLPPHLGFERVGT--SAIAGVNDVLPLPRPSSH----- 187
SL YG KSS++C +YD ++ E+ P G R G+ +A + ++ + P+ H
Sbjct: 291 SLQVYGRKSSMQCNKYDIDNPEVRPSRRGILRAGSPHTAATQASSMVEVEGPTHHSKSKF 350
Query: 188 ------PRTGPK-----------LNSFSETVADRPSLCGFGSEWPSNCNIELTRGWP--D 310
P GP+ N+ V +R S G+ +N N R WP D
Sbjct: 351 SRFSPPPIIGPRKSILPLTDRFSRNTSPRRVLERASPSHSGAGRGTNQNSWFERIWPFDD 410
Query: 311 GEQNTETSWAYNRKNECDKLHARLLKDSYGS--------SDMPMKESL------------ 430
Q ++S A+N N + H+R L D+YG+ +P + L
Sbjct: 411 VTQQVKSSMAFNLNNGYAEKHSRELIDAYGNCSGTSTSLEKLPKVQRLDVNGLASEAANI 470
Query: 431 ----SSEEEFVWEKMSPTF-PRKEYNS-TLFGHNT-------DLPRSNASYLGNDFGSNQ 571
S EEE+VWE MSPT R NS G +T L R +AS L +DFG +
Sbjct: 471 KWKNSEEEEYVWEDMSPTLSDRSRRNSQPPLGRSTGSLSIRGGLTRPDASLLEHDFGRHS 530
Query: 572 YNQSADIIANPGCR-------------ASSDKFEDYVVSHEESMLRSQNSYHCQETLK-- 706
+ A + +P + + K D +V+ + +L SQ S+H +E K
Sbjct: 531 WPGQAQAVDDPAYTVEDRIPLFGSAHGSRNRKNLDSIVNQNKLLLHSQGSHHTREPRKLP 590
Query: 707 ----------LSNEAQGRS--APLAATPVSP 763
LS +A+GR+ P+AA+ ++P
Sbjct: 591 YVLPQSSQQSLSPQARGRAPQMPVAASGITP 621
>ref|XP_008808984.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X2 [Phoenix dactylifera]
Length = 977
Score = 78.6 bits (192), Expect = 1e-11
Identities = 83/305 (27%), Positives = 117/305 (38%), Gaps = 78/305 (25%)
Frame = +2
Query: 29 SLLSYGHKSSVRCGEYDHEDHELLPPHLGFERVGTSAIAGVNDV-------------LPL 169
SL YG KSS++C EY+ + E+LP G R G+ A + +
Sbjct: 208 SLQVYGKKSSMQCSEYNIDHPEVLPARPGVARTGSPQTAATCTASMVEVEGPTRQLKIKI 267
Query: 170 PRPSSHPRTGPK------LNSFSETVADR-------PSLCGF----GSEWPSNCNIELTR 298
RPS P GP+ ++ FS + R PS GF G N +E R
Sbjct: 268 SRPSPPPIIGPRKSISPPVDRFSRDTSPRRMRERASPSHSGFVYGPGRGTSQNGWLERRR 327
Query: 299 GWPDGEQNTETSWAYNRKNECDKLHARLLKDSYG------------------------SS 406
+ DG Q + S A+N N K +R L D+YG S
Sbjct: 328 PFDDGAQQIQASMAFNLNNGYAKQRSRELIDAYGNYTGKSFSLEKLPKVPRLDVNSVASE 387
Query: 407 DMPMKESLSSEEEFVWEKMSPTFPRKEYNSTL--FGHNT-------DLPRSNASYLGNDF 559
K S EEE+VWE MSPT + ++L FG +T L R +AS L +D
Sbjct: 388 RASRKWKNSEEEEYVWEDMSPTLSDRSRRNSLPPFGPSTGSLSTRAGLTRPDASLLDHDS 447
Query: 560 GSNQYNQSADI---------------IANPGCRASSDKFEDYVVSHEESMLRSQNSYHCQ 694
G + A + + P + + K+ D VS + + Q S+H
Sbjct: 448 GRRSWPGQAQLPAVGDPANTIEDRIPVFGPAHGSMNRKYLDSTVSQNDWLPPYQGSHHTH 507
Query: 695 ETLKL 709
E KL
Sbjct: 508 EPRKL 512
>ref|XP_008808980.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
ref|XP_008808981.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
ref|XP_008808982.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
ref|XP_008808983.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Phoenix dactylifera]
Length = 1065
Score = 78.6 bits (192), Expect = 1e-11
Identities = 83/305 (27%), Positives = 117/305 (38%), Gaps = 78/305 (25%)
Frame = +2
Query: 29 SLLSYGHKSSVRCGEYDHEDHELLPPHLGFERVGTSAIAGVNDV-------------LPL 169
SL YG KSS++C EY+ + E+LP G R G+ A + +
Sbjct: 296 SLQVYGKKSSMQCSEYNIDHPEVLPARPGVARTGSPQTAATCTASMVEVEGPTRQLKIKI 355
Query: 170 PRPSSHPRTGPK------LNSFSETVADR-------PSLCGF----GSEWPSNCNIELTR 298
RPS P GP+ ++ FS + R PS GF G N +E R
Sbjct: 356 SRPSPPPIIGPRKSISPPVDRFSRDTSPRRMRERASPSHSGFVYGPGRGTSQNGWLERRR 415
Query: 299 GWPDGEQNTETSWAYNRKNECDKLHARLLKDSYG------------------------SS 406
+ DG Q + S A+N N K +R L D+YG S
Sbjct: 416 PFDDGAQQIQASMAFNLNNGYAKQRSRELIDAYGNYTGKSFSLEKLPKVPRLDVNSVASE 475
Query: 407 DMPMKESLSSEEEFVWEKMSPTFPRKEYNSTL--FGHNT-------DLPRSNASYLGNDF 559
K S EEE+VWE MSPT + ++L FG +T L R +AS L +D
Sbjct: 476 RASRKWKNSEEEEYVWEDMSPTLSDRSRRNSLPPFGPSTGSLSTRAGLTRPDASLLDHDS 535
Query: 560 GSNQYNQSADI---------------IANPGCRASSDKFEDYVVSHEESMLRSQNSYHCQ 694
G + A + + P + + K+ D VS + + Q S+H
Sbjct: 536 GRRSWPGQAQLPAVGDPANTIEDRIPVFGPAHGSMNRKYLDSTVSQNDWLPPYQGSHHTH 595
Query: 695 ETLKL 709
E KL
Sbjct: 596 EPRKL 600
>ref|XP_010931817.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylation and cleavage factor
homolog 4 [Elaeis guineensis]
Length = 1070
Score = 75.1 bits (183), Expect = 1e-10
Identities = 85/337 (25%), Positives = 137/337 (40%), Gaps = 90/337 (26%)
Frame = +2
Query: 29 SLLSYGHKSSVRCGEYDHEDHELLPPHLGFERVGT--SAIAGVNDVLPLPRPSSHPRT-- 196
SL YG KSS++C EYD + E+LP G R G+ +A ++ + P+ H ++
Sbjct: 291 SLQVYGQKSSLQCNEYDIDHPEVLPSRRGIVRTGSPLTAATRATSIVEVEGPTRHSKSKF 350
Query: 197 ---------------GPKLNSFSETVADR-------PSLCGFGSEWPSNCNIELTRGWP- 307
P + FS + R PS G +N N R WP
Sbjct: 351 SRFSPPPIIGPRKSVSPPTDRFSRRTSPRRVLKRTSPSHSEAGR--GTNQNGRFERSWPC 408
Query: 308 -DGEQNTETSWAYNRKNECDKLHARLLKDSYGS--------SDMPMKESL---------- 430
D + ++S A++ + K H+R L D+YG+ +P + L
Sbjct: 409 DDATEQVKSSMAFSLNSGYAKQHSRDLIDAYGNCRGKSTSLEKLPKVQRLDVNGIASEAA 468
Query: 431 ------SSEEEFVWEKMSPTFPRKEYNSTL--FGHNT-------DLPRSNASYLGNDFGS 565
S EEE+VWE MSPT + + G +T L R +AS L +DFG
Sbjct: 469 TRKWKNSEEEEYVWEDMSPTLSDRSRRKSQPPLGPSTGNLSIRGGLTRPDASLLEHDFGR 528
Query: 566 NQYNQSADI--IANPGCR-------------ASSDKFEDYVVSHEESMLRSQNSYHCQET 700
+ + A + I +P + + K+ D +V+ + + SQ S+H E
Sbjct: 529 HSWPGQAQLPAIDDPAYTVEDRIHFFGNAHGSMNRKYLDGIVNQHKLLADSQGSHHTHEP 588
Query: 701 LK------------LSNEAQGRSA--PLAATPVSPRL 769
K LS +GR++ P+AA+ ++P +
Sbjct: 589 RKLPYMFPQSSQQSLSPRLRGRASQMPVAASGITPSI 625
>ref|XP_010909642.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like [Elaeis
guineensis]
Length = 1053
Score = 72.8 bits (177), Expect = 8e-10
Identities = 86/337 (25%), Positives = 127/337 (37%), Gaps = 92/337 (27%)
Frame = +2
Query: 38 SYGHKSSVRCGEYDHEDHELLPPHLGFERVGTSAIAGVNDV-------------LPLPRP 178
S G KSS++C EY + E+LPP G R G+ A + + R
Sbjct: 273 SSGQKSSMQCNEYSIDHPEVLPPRPGAARTGSPQTAATCTTSMVEVEGPTRQLKIKISRS 332
Query: 179 SSHPRTGPK------LNSFSETVADR-------PSLCGF--GSEWPSNCNIELTRGWP-- 307
S P GP+ ++ FS + R PS GF G +N N L R WP
Sbjct: 333 SPPPIIGPRNSISPPIDRFSRDTSPRRMLERVSPSHSGFVYGPGRGTNQNGWLERRWPFD 392
Query: 308 DGEQNTETSWAYNRKNECDKLHARLLKDSYG------------------------SSDMP 415
D Q + S A+N N K +R L D+YG S
Sbjct: 393 DSAQKIQASMAFNLNNGYAKQRSRELIDAYGNYTGKSASLEKLPKVQRVDVNSVASERAA 452
Query: 416 MKESLSSEEEFVWEKMSPTFPRKEYNSTLFGHNTDLP---------RSNASYLGNDFGSN 568
K S EEE+VWE MSPT + ++L LP R +AS L +D G
Sbjct: 453 RKWKNSEEEEYVWEDMSPTLSDRSRRNSLPPFGPSLPPLSTRAGLTRPDASLLDHDSGRR 512
Query: 569 QYNQSADI---------------IANPGCRASSDKFEDYVVSHEESMLRSQNSYHCQETL 703
+ A + + + + K+ D VS + + Q S H +
Sbjct: 513 SWPGQAQLPAVGDSAFTIEDRIPVFGSAHGSMNRKYLDSTVSQNDWLPHYQGSQHMHQPR 572
Query: 704 K------------LSNEAQGRS--APLAATPVSPRLL 772
K LS +++GR+ P+AA+ ++P ++
Sbjct: 573 KLPFMFPKSAQHSLSPQSRGRAHQMPVAASGITPLVI 609
>ref|XP_009399217.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like
isoform X2 [Musa acuminata subsp. malaccensis]
Length = 1000
Score = 62.8 bits (151), Expect = 1e-06
Identities = 69/252 (27%), Positives = 90/252 (35%), Gaps = 63/252 (25%)
Frame = +2
Query: 32 LLSYGHKSSVRCGEYDHEDHELLPPHLGFERVGT--------SAIAGVNDVLP------- 166
L +YG K S + EYD + ELLP L R G+ S++ +P
Sbjct: 242 LQAYGQKPSAQYSEYDLDQPELLPQRLAVAREGSPQTAMLRPSSMIDARGSVPYLKNKIS 301
Query: 167 ---------LPRPSSHPRTGPKLNSFSETVADRPSLCGFGSEWP----SNCNIELTRGWP 307
L RP S P + + R S FGS + S+ N L R WP
Sbjct: 302 VPLSPRRIGLKRPVSPPIVRSHNGTSPRKIGGRASTSHFGSGFEPGRLSDPNGWLGRSWP 361
Query: 308 DGE--QNTETSWAYNRKNECDKLHARLLKDSYG------------------------SSD 409
E Q+ E S Y N K H R L D+YG S
Sbjct: 362 SNEDPQHVEASTLYKLNNGSGKQHPRDLIDAYGNPRGRVSSYEKFSKVQRLDVNGIASEA 421
Query: 410 MPMKESLSSEEEFVWEKMSPT---------FPRKEYNSTLFGHNTDLPRSNASYLGNDFG 562
K S EEE+ WE MSPT PR ++ G T R + + L +DFG
Sbjct: 422 AARKWKNSDEEEYDWEDMSPTLSDRSRRNSLPRVGPSAGSLGIRTGFSRPDPAVLESDFG 481
Query: 563 SNQYNQSADIIA 598
+ A + A
Sbjct: 482 RRSWPGQAQLHA 493
>ref|XP_009399215.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Musa acuminata subsp. malaccensis]
ref|XP_009399216.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
X1 [Musa acuminata subsp. malaccensis]
Length = 1039
Score = 62.8 bits (151), Expect = 1e-06
Identities = 69/252 (27%), Positives = 90/252 (35%), Gaps = 63/252 (25%)
Frame = +2
Query: 32 LLSYGHKSSVRCGEYDHEDHELLPPHLGFERVGT--------SAIAGVNDVLP------- 166
L +YG K S + EYD + ELLP L R G+ S++ +P
Sbjct: 281 LQAYGQKPSAQYSEYDLDQPELLPQRLAVAREGSPQTAMLRPSSMIDARGSVPYLKNKIS 340
Query: 167 ---------LPRPSSHPRTGPKLNSFSETVADRPSLCGFGSEWP----SNCNIELTRGWP 307
L RP S P + + R S FGS + S+ N L R WP
Sbjct: 341 VPLSPRRIGLKRPVSPPIVRSHNGTSPRKIGGRASTSHFGSGFEPGRLSDPNGWLGRSWP 400
Query: 308 DGE--QNTETSWAYNRKNECDKLHARLLKDSYG------------------------SSD 409
E Q+ E S Y N K H R L D+YG S
Sbjct: 401 SNEDPQHVEASTLYKLNNGSGKQHPRDLIDAYGNPRGRVSSYEKFSKVQRLDVNGIASEA 460
Query: 410 MPMKESLSSEEEFVWEKMSPT---------FPRKEYNSTLFGHNTDLPRSNASYLGNDFG 562
K S EEE+ WE MSPT PR ++ G T R + + L +DFG
Sbjct: 461 AARKWKNSDEEEYDWEDMSPTLSDRSRRNSLPRVGPSAGSLGIRTGFSRPDPAVLESDFG 520
Query: 563 SNQYNQSADIIA 598
+ A + A
Sbjct: 521 RRSWPGQAQLHA 532
>ref|XP_010275999.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
[Nelumbo nucifera]
Length = 895
Score = 60.1 bits (144), Expect = 7e-06
Identities = 77/304 (25%), Positives = 110/304 (36%), Gaps = 63/304 (20%)
Frame = +2
Query: 2 DAQQTRLPPSLLS-YGHKSSVRCGEYDHEDHELLPPHLGFE-------RVGTSAIAGVND 157
D QQ R S L YG K + E+D + E + PH G + + S++
Sbjct: 75 DIQQGRGSSSSLQIYGRKPASGYVEFDLDHDEGISPHFGVQGLDSQGAAIRASSVGAAER 134
Query: 158 VLP----LPRPSSHPRTGPK----------LNSFSETVADRPSLCGFGSEWPSNCNIELT 295
+LP L R SS R G + +N+ V + S GSE+ + T
Sbjct: 135 LLPTKARLARSSSPARIGARSLPPTNDGFAINNSPRRVVEGASPSHSGSEYGPG---KAT 191
Query: 296 RGWPDGE--------QNTETSWAYNRKNECDKLHARLLKDSYG----------------- 400
G DGE Q ETS YN N CD+ R L D+YG
Sbjct: 192 DG--DGEKSEWWFKCQQMETSGTYNPSNGCDQQRPRALIDAYGNYRGKNTLNGKPLKVER 249
Query: 401 -------SSDMPMKESLSSEEEFVWEKMSPTFPRKEYNSTLFGHN---------TDLPRS 532
S ++ + + EEE+VWE MSPT + + L N T L R
Sbjct: 250 LDINGINSKEVSKRWQNTEEEEYVWEDMSPTLTDRSRGNDLMPFNPPLGSLSRRTGLERP 309
Query: 533 NASYLGNDFGSNQYNQSADIIANPGCRASSDKFEDYVVSHEESMLRSQNSYHCQETLKLS 712
+ + L +DF + + S + S +M NS C +T S
Sbjct: 310 STAILESDFRRGNWPNQVQLSTMDDAAFISGDGVSILGSGHVTM--GNNSLRCPQTQNES 367
Query: 713 NEAQ 724
+ Q
Sbjct: 368 SHVQ 371
>ref|XP_010275998.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
[Nelumbo nucifera]
Length = 1071
Score = 60.1 bits (144), Expect = 8e-06
Identities = 77/304 (25%), Positives = 110/304 (36%), Gaps = 63/304 (20%)
Frame = +2
Query: 2 DAQQTRLPPSLLS-YGHKSSVRCGEYDHEDHELLPPHLGFE-------RVGTSAIAGVND 157
D QQ R S L YG K + E+D + E + PH G + + S++
Sbjct: 251 DIQQGRGSSSSLQIYGRKPASGYVEFDLDHDEGISPHFGVQGLDSQGAAIRASSVGAAER 310
Query: 158 VLP----LPRPSSHPRTGPK----------LNSFSETVADRPSLCGFGSEWPSNCNIELT 295
+LP L R SS R G + +N+ V + S GSE+ + T
Sbjct: 311 LLPTKARLARSSSPARIGARSLPPTNDGFAINNSPRRVVEGASPSHSGSEYGPG---KAT 367
Query: 296 RGWPDGE--------QNTETSWAYNRKNECDKLHARLLKDSYG----------------- 400
G DGE Q ETS YN N CD+ R L D+YG
Sbjct: 368 DG--DGEKSEWWFKCQQMETSGTYNPSNGCDQQRPRALIDAYGNYRGKNTLNGKPLKVER 425
Query: 401 -------SSDMPMKESLSSEEEFVWEKMSPTFPRKEYNSTLFGHN---------TDLPRS 532
S ++ + + EEE+VWE MSPT + + L N T L R
Sbjct: 426 LDINGINSKEVSKRWQNTEEEEYVWEDMSPTLTDRSRGNDLMPFNPPLGSLSRRTGLERP 485
Query: 533 NASYLGNDFGSNQYNQSADIIANPGCRASSDKFEDYVVSHEESMLRSQNSYHCQETLKLS 712
+ + L +DF + + S + S +M NS C +T S
Sbjct: 486 STAILESDFRRGNWPNQVQLSTMDDAAFISGDGVSILGSGHVTM--GNNSLRCPQTQNES 543
Query: 713 NEAQ 724
+ Q
Sbjct: 544 SHVQ 547