BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00030270
         (385 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020251395.1| DNA-directed RNA polymerase 3B, chloroplasti...    40   2e-10

>ref|XP_020251395.1| DNA-directed RNA polymerase 3B, chloroplastic-like [Asparagus
           officinalis]
          Length = 989

 Score = 40.0 bits (92), Expect(3) = 2e-10
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = -2

Query: 291 ISPLSNPPLFLDPVDNFNRSI*FQWTEPFKI*YLEDPIQISRLRLSEKEAQR 136
           ++PL +P + LDPV +  +S+  QWT+P    +LEDP++I      E E  R
Sbjct: 99  LTPLQSP-VALDPVAHLKQSLQIQWTQPLNFTFLEDPVRILPNPSPEPEESR 149



 Score = 37.0 bits (84), Expect(3) = 2e-10
 Identities = 23/52 (44%), Positives = 24/52 (46%)
 Frame = -3

Query: 158 SARRKHNDLRRRQIKXXXXXXXXXXXXXXXXXXXXXXXXXAPSLPYVKSLFL 3
           S R+K N LRRRQIK                         APSLPYVKSLFL
Sbjct: 148 SRRKKQNSLRRRQIKAEAEAWARAAEEYKELVRVMLEKKLAPSLPYVKSLFL 199



 Score = 35.4 bits (80), Expect(3) = 2e-10
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -1

Query: 376 KPRKTLIPPIPNRVTLSSLRSSPFPLGLD 290
           K +KT   P+P  + L+SLR SPFPLG D
Sbjct: 54  KSKKTPFHPVPRFLPLNSLRHSPFPLGSD 82