BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00030007
         (522 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_654205.1| photosystem II M protein (chloroplast) [Oryza s...    84   2e-18
gb|KQK85735.1| hypothetical protein SETIT_020844mg, partial [Set...    71   1e-13
gb|ANF05123.1| photosystem II protein M (chloroplast) [Cynanchum...    70   3e-13
gb|EFH64612.1| hypothetical protein ARALYDRAFT_893970 [Arabidops...    71   9e-13
gb|AFK38374.1| unknown [Medicago truncatula]                           69   1e-12
gb|ATG83018.1| photosystem II protein M (chloroplast) [Phoenix d...    53   6e-11
gb|AAS46110.1| photosystem II M protein (chloroplast) [Oryza sat...    64   2e-10
gb|ADD63027.1| photosystem II protein M (chloroplast) [Potamophi...    64   2e-10
gb|ADD63094.1| photosystem II protein M (chloroplast) [Microlaen...    58   4e-08
ref|YP_009409886.1| photosystem II protein M (chloroplast) [Cres...    41   6e-08

>ref|YP_654205.1| photosystem II M protein (chloroplast) [Oryza sativa Indica Group]
 gb|AAS46045.1| photosystem II M protein (chloroplast) [Oryza sativa Indica Group]
          Length = 68

 Score = 84.3 bits (207), Expect = 2e-18
 Identities = 40/70 (57%), Positives = 46/70 (65%)
 Frame = +2

Query: 80  LIQYHRDAINPVAFAGVKFLISMGLDPELLRNKRRLDYGSQYSRTYCYCTVHSSSYCFFT 259
           +IQY+++A  P+ F G  F       P     KR   YGSQYSR YCYC VHSSSYC FT
Sbjct: 1   MIQYYQNASPPLEFTGYPFPSPWDYIPSYCEKKR--GYGSQYSRIYCYCIVHSSSYCLFT 58

Query: 260 YHLCKNSQPK 289
           Y+LCKNSQPK
Sbjct: 59  YYLCKNSQPK 68


>gb|KQK85735.1| hypothetical protein SETIT_020844mg, partial [Setaria italica]
          Length = 33

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = +2

Query: 191 YGSQYSRTYCYCTVHSSSYCFFTYHLCKNSQPK 289
           YGSQYSR YCYC VHSSSYC FTY+LCKNSQPK
Sbjct: 1   YGSQYSRIYCYCIVHSSSYCLFTYYLCKNSQPK 33


>gb|ANF05123.1| photosystem II protein M (chloroplast) [Cynanchum auriculatum]
          Length = 50

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 34/50 (68%), Positives = 40/50 (80%), Gaps = 2/50 (4%)
 Frame = +2

Query: 146 MGLDPELLRNKR--RLDYGSQYSRTYCYCTVHSSSYCFFTYHLCKNSQPK 289
           MGL+PELLR+K+  RLDYGS+YS   CYCT+HSSSY   TYHL KN+Q K
Sbjct: 1   MGLNPELLRSKKKKRLDYGSKYSCICCYCTIHSSSYRLSTYHLRKNNQSK 50


>gb|EFH64612.1| hypothetical protein ARALYDRAFT_893970 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 120

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 39/63 (61%), Positives = 46/63 (73%), Gaps = 4/63 (6%)
 Frame = -2

Query: 323 LIIIQVSFKLIILADCFYIDDK*KSSRN*NEQCSSNKCENIDFHNLI----FFCFAITRD 156
           LI I   FKLIIL + FY++ K KSSRN NE+C SNKC+NI FHNLI    +F F I+RD
Sbjct: 58  LIAIFHLFKLIILTNGFYVNYKQKSSRNENEECGSNKCKNIYFHNLIVYYYYFFFLISRD 117

Query: 155 LIP 147
           LIP
Sbjct: 118 LIP 120


>gb|AFK38374.1| unknown [Medicago truncatula]
          Length = 52

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 34/52 (65%), Positives = 40/52 (76%), Gaps = 4/52 (7%)
 Frame = +2

Query: 146 MGLDPEL-LRNKRRL---DYGSQYSRTYCYCTVHSSSYCFFTYHLCKNSQPK 289
           MGL+PE+ +RNKR     DYGSQYSR Y YCT+HSSSYC FTY+L KN + K
Sbjct: 1   MGLNPEVFIRNKRERKHRDYGSQYSRIYSYCTLHSSSYCLFTYNLRKNGKSK 52


>gb|ATG83018.1| photosystem II protein M (chloroplast) [Phoenix dactylifera]
          Length = 70

 Score = 53.1 bits (126), Expect(2) = 6e-11
 Identities = 23/33 (69%), Positives = 30/33 (90%)
 Frame = +2

Query: 83  IQYHRDAINPVAFAGVKFLISMGLDPELLRNKR 181
           +QYH+++I+PV   GVKFLISMGLDPELLR+K+
Sbjct: 1   MQYHQNSIHPVELTGVKFLISMGLDPELLRSKK 33



 Score = 41.6 bits (96), Expect(2) = 6e-11
 Identities = 23/38 (60%), Positives = 24/38 (63%)
 Frame = +3

Query: 177 KED*IMEVNXXXXXXXXXXXXVPTAFLLIIYVKTVSQN 290
           K + IMEVN            VPTAFLLIIYVKTVSQN
Sbjct: 33  KNNEIMEVNILAFIATALFILVPTAFLLIIYVKTVSQN 70


>gb|AAS46110.1| photosystem II M protein (chloroplast) [Oryza sativa Japonica
           Group]
 gb|AAS46173.1| photosystem II M protein (chloroplast) [Oryza sativa Japonica
           Group]
 gb|ADD62823.1| photosystem II protein M (chloroplast) [Oryza sativa Japonica
           Group]
 gb|ADD62891.1| photosystem II protein M (chloroplast) [Oryza meridionalis]
 gb|ADD62959.1| photosystem II protein M (chloroplast) [Oryza australiensis]
 gb|AGY48933.1| photosystem II reaction center protein M (chloroplast) [Oryza
           rufipogon]
          Length = 69

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 36/61 (59%), Positives = 37/61 (60%)
 Frame = +3

Query: 111 PLHLQESNFSSLWD*IPSYCETKED*IMEVNXXXXXXXXXXXXVPTAFLLIIYVKTVSQN 290
           PL      F S WD IPSYCE KE  +MEVN            VPTAFLLIIYVKTVSQN
Sbjct: 11  PLEFTGYPFPSPWDYIPSYCEKKE--VMEVNILAFIATALFILVPTAFLLIIYVKTVSQN 68

Query: 291 D 293
           D
Sbjct: 69  D 69


>gb|ADD63027.1| photosystem II protein M (chloroplast) [Potamophila parviflora]
          Length = 69

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 36/61 (59%), Positives = 37/61 (60%)
 Frame = +3

Query: 111 PLHLQESNFSSLWD*IPSYCETKED*IMEVNXXXXXXXXXXXXVPTAFLLIIYVKTVSQN 290
           PL      F S WD IPSYCE KE  +MEVN            VPTAFLLIIYVKTVSQN
Sbjct: 11  PLEFTGYPFYSPWDYIPSYCEKKE--VMEVNILAFIATALFILVPTAFLLIIYVKTVSQN 68

Query: 291 D 293
           D
Sbjct: 69  D 69


>gb|ADD63094.1| photosystem II protein M (chloroplast) [Microlaena stipoides]
          Length = 69

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 34/61 (55%), Positives = 35/61 (57%)
 Frame = +3

Query: 111 PLHLQESNFSSLWD*IPSYCETKED*IMEVNXXXXXXXXXXXXVPTAFLLIIYVKTVSQN 290
           P     S F S WD IPSY E KE  +MEVN            VPTAFLLIIYVKT SQN
Sbjct: 11  PPEFTVSPFPSPWDYIPSYYEKKE--VMEVNILAFIATALFILVPTAFLLIIYVKTASQN 68

Query: 291 D 293
           D
Sbjct: 69  D 69


>ref|YP_009409886.1| photosystem II protein M (chloroplast) [Cressa cretica]
 gb|ASJ65073.1| photosystem II protein M (chloroplast) [Cressa cretica]
          Length = 79

 Score = 41.2 bits (95), Expect(3) = 6e-08
 Identities = 22/39 (56%), Positives = 24/39 (61%)
 Frame = +3

Query: 177 KED*IMEVNXXXXXXXXXXXXVPTAFLLIIYVKTVSQND 293
           + D IMEVN            VPTAF LIIYVKTVSQ+D
Sbjct: 41  RRDEIMEVNILAFIATALFILVPTAFFLIIYVKTVSQSD 79



 Score = 36.2 bits (82), Expect(3) = 6e-08
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +1

Query: 115 CICRSQISHLYGIRSRVIAKQKKIR 189
           CI + +I HLYGI+SRVIAK KK R
Sbjct: 18  CIFKRKIYHLYGIKSRVIAKLKKRR 42



 Score = 26.6 bits (57), Expect(3) = 6e-08
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 59  IVIHNIDLIQYHRDAIN 109
           + IH+ID I+YHRD I+
Sbjct: 1   MAIHDIDPIRYHRDVIH 17