BLASTX nr result
ID: Ophiopogon25_contig00029438
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00029438
(796 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6... 54 2e-10
ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III s... 54 2e-09
ref|XP_008813399.1| PREDICTED: DNA-directed RNA polymerase III s... 53 2e-09
ref|XP_019705973.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 43 2e-06
gb|PKA46474.1| hypothetical protein AXF42_Ash012607 [Apostasia s... 42 4e-06
>ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
officinalis]
ref|XP_020246713.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
officinalis]
gb|ONK58492.1| uncharacterized protein A4U43_C09F13600 [Asparagus officinalis]
Length = 231
Score = 53.9 bits (128), Expect(2) = 2e-10
Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Frame = -2
Query: 444 DVPFIKVLRQQCMVHISV-----------VIKESAH----VFNMEITFNRV-SC*XXXXX 313
DV FIK+LRQQC H+ IKE VF EIT +V
Sbjct: 96 DVAFIKILRQQCRRHVEEHKVATCEMVRKAIKEPKRGRPPVFTTEITLQQVYEILELMVL 155
Query: 312 XXXXXXLQSSGVGEFSDVAAGKDCYRILKGGEGPND-ALTSLLVWDLARIRE 160
++SSGVG+FS V G+DCYR+ +G GP + A S+ RI E
Sbjct: 156 DKEVEKVRSSGVGDFSHVPEGRDCYRVSRGEGGPKEGAFASIPCGVCPRIHE 207
Score = 40.4 bits (93), Expect(2) = 2e-10
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = -1
Query: 664 VIKVMEYSGILTQDVIKQAVGVPSTMVTKSLKSIQTKNLI*EV 536
VIK + SGI T D+ K+ +G P T V K+LKS+ TKNLI EV
Sbjct: 21 VIKSRKGSGIWTNDLKKEVMG-PPTAVAKALKSLLTKNLIKEV 62
>ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
ref|XP_010927733.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
ref|XP_010927734.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
ref|XP_010927735.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
Length = 237
Score = 53.9 bits (128), Expect(2) = 2e-09
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Frame = -2
Query: 444 DVPFIKVLRQQCMVHISVV-----------IKESAHVFNMEITFNR-VSC*XXXXXXXXX 301
D+ FI++LR+QC+ HI + I+ES VF +E T + V
Sbjct: 108 DIEFIRILREQCLKHIERLQIATMEAIYKSIQES-RVFKVECTMQQIVEIVNAMVLDKEI 166
Query: 300 XXLQSSGVGEFSDVAAGKDCYRILKGGEGPN-DALTSLLVWDLARIRE 160
L+S+G+G+FS V +GK CY+ LKG EGP AL+S+ RI E
Sbjct: 167 EELKSTGIGDFSKVPSGKICYKSLKGREGPKIGALSSIPCGVCPRIGE 214
Score = 37.0 bits (84), Expect(2) = 2e-09
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = -1
Query: 664 VIKVMEYSGILTQDVIKQAVGVPSTMVTKSLKSIQTKNLI*EVAVVN 524
+I+ + GI T D+ K+ G+ +T+VTK+LKS+Q KNLI +V ++
Sbjct: 33 LIRSKQNIGIWTADM-KRETGLQTTVVTKTLKSLQNKNLIKDVVNIH 78
>ref|XP_008813399.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Phoenix
dactylifera]
ref|XP_008813400.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Phoenix
dactylifera]
Length = 232
Score = 52.8 bits (125), Expect(2) = 2e-09
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Frame = -2
Query: 444 DVPFIKVLRQQCMVHISVV-----------IKESAHVFNMEITFNR-VSC*XXXXXXXXX 301
D FI++LR+QC+ HI + I+ES VF +E T + V
Sbjct: 103 DTDFIRILREQCLKHIERLQVATMEAIYKSIQES-RVFKVECTMQQIVEIVNAMVLDKEV 161
Query: 300 XXLQSSGVGEFSDVAAGKDCYRILKGGEGP 211
L+S+G+G+FS V +GK CYR LKG EGP
Sbjct: 162 EELKSTGIGDFSKVQSGKICYRSLKGREGP 191
Score = 38.1 bits (87), Expect(2) = 2e-09
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = -1
Query: 664 VIKVMEYSGILTQDVIKQAVGVPSTMVTKSLKSIQTKNLI*EVAVVN 524
+IK + GI T D+ K+ G+ +T+VTK+LKS+Q KNLI +V ++
Sbjct: 28 LIKSKQNLGIWTADM-KRETGLQTTVVTKTLKSLQNKNLIKDVVNIH 73
>ref|XP_019705973.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit rpc6-like [Elaeis guineensis]
Length = 240
Score = 43.1 bits (100), Expect(2) = 2e-06
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Frame = -2
Query: 444 DVPFIKVLRQQCMVHIS--------VVIK--ESAHVFNMEITFNR-VSC*XXXXXXXXXX 298
D FI++LR+QC+ HI + K + + VF +E T + V
Sbjct: 111 DTDFIRILREQCLNHIERFQVATMEAIYKSIQESRVFKVECTMHHIVEIVNAMVLDKEVE 170
Query: 297 XLQSSGVGEFSDVAAGKDCYRILKGGEGPN-DALTSLLVWDLARIRE 160
L+S+G+G+FS +GK CYR L+ G A +S+ RIRE
Sbjct: 171 ELKSTGIGDFSKAQSGKICYRSLRSRGGLKIGAFSSIPCGVCPRIRE 217
Score = 37.4 bits (85), Expect(2) = 2e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = -1
Query: 664 VIKVMEYSGILTQDVIKQAVGVPSTMVTKSLKSIQTKNLI*EVAVVN 524
+IK + GI T D K+ G+ +T+VTK+LKS+Q KNLI +V ++
Sbjct: 33 LIKSKQNLGIWTADT-KRDTGLQTTVVTKTLKSLQNKNLIKDVVNIH 78
>gb|PKA46474.1| hypothetical protein AXF42_Ash012607 [Apostasia shenzhenica]
Length = 230
Score = 42.0 bits (97), Expect(2) = 4e-06
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Frame = -2
Query: 444 DVPFIKVLRQQCMVHIS-----------VVIKESAHVFNMEITFNRVS-C*XXXXXXXXX 301
D FI VLR QC+ HI I++S VF E T ++
Sbjct: 101 DFEFINVLRGQCLRHIERHKVATVEIVWQCIRDSG-VFTTECTMQQIKEIMGAMVLDKEI 159
Query: 300 XXLQSSGVGEFSDVAAGKDCYRILKGGEGPND 205
L SSGVG+ S + AG+ CYR +G G ND
Sbjct: 160 EELNSSGVGDSSHIPAGRKCYRSSRGRAGSND 191
Score = 37.7 bits (86), Expect(2) = 4e-06
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = -1
Query: 640 GILTQDVIKQAVGVPSTMVTKSLKSIQTKNLI*EVAVVN 524
G+ T D+ K+A G+P+ TK+LKS+QTK+LI VA +N
Sbjct: 34 GMWTADM-KKATGLPNNTFTKTLKSLQTKDLIKAVANIN 71