BLASTX nr result
ID: Ophiopogon25_contig00029118
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00029118
(351 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN79317.1| hypothetical protein VITISV_008344 [Vitis vinifera] 63 2e-10
ref|WP_103439372.1| ribonuclease H [Arenibacter hampyeongensis] 62 2e-09
ref|WP_042420732.1| ribonuclease H [Geomicrobium sp. JCM 19038] ... 62 5e-09
dbj|GAK01363.1| LOW QUALITY PROTEIN: ribonuclease HI-related pro... 62 5e-09
ref|WP_080317851.1| ribonuclease H [Croceivirga radicis] >gi|116... 61 6e-09
ref|WP_010519571.1| ribonuclease H [Mesoflavibacter zeaxanthinif... 61 6e-09
ref|WP_093977520.1| ribonuclease H [Arenibacter algicola] >gi|12... 61 6e-09
gb|KZV19582.1| proton pump-interactor 1-like [Dorcoceras hygrome... 59 8e-09
ref|WP_004330562.1| ribonuclease H [Porphyromonas asaccharolytic... 61 8e-09
ref|WP_099305018.1| ribonuclease H [Bacillus sp. Marseille-P3800] 61 9e-09
ref|WP_013759884.1| ribonuclease H [Porphyromonas asaccharolytic... 61 1e-08
ref|WP_026473938.1| ribonuclease H [Alkaliflexus imshenetskii] 60 2e-08
ref|WP_009534600.1| ribonuclease [Oribacterium parvum] >gi|36195... 60 2e-08
ref|WP_097156661.1| ribonuclease H [Bacillus oleivorans] >gi|124... 60 2e-08
gb|KZV25877.1| proton pump-interactor 1-like, partial [Dorcocera... 58 2e-08
ref|WP_018923404.1| hypothetical protein [Salsuginibacillus kocu... 60 2e-08
emb|CAN71683.1| hypothetical protein VITISV_040973 [Vitis vinifera] 61 2e-08
ref|WP_103475149.1| ribonuclease H [Arenibacter catalasegens] 60 2e-08
ref|WP_097044190.1| ribonuclease H [Spongiibacterium pacificum] ... 60 2e-08
gb|PCJ95322.1| ribonuclease H [Flavobacteriaceae bacterium] 60 2e-08
>emb|CAN79317.1| hypothetical protein VITISV_008344 [Vitis vinifera]
Length = 118
Score = 63.2 bits (152), Expect = 2e-10
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY 185
YV+F GR+ G+Y WP C EQV GY G +Y+ Y T+E+A RA+M Y
Sbjct: 32 YVVFAGRKKGIYNSWPECQEQVVGYKGNVYKLYKTFEEARRAWMFY 77
>ref|WP_103439372.1| ribonuclease H [Arenibacter hampyeongensis]
Length = 211
Score = 62.4 bits (150), Expect = 2e-09
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDD--GNQLNQ 221
Y ++ G RPG+Y W C + Y GA Y+ +PT+E A++AF G YDD G ++N
Sbjct: 8 YTVWKGSRPGIYTSWKDCKAAITNYKGAQYKSFPTFEAAKKAFN---GNYDDYKGKKINT 64
Query: 222 STPIAMG--QNVAFTSISQISANQAMTGNDGV 311
S P++ Q + + + IS + A +GN G+
Sbjct: 65 S-PLSKEQLQKIGEPNYNSISVDAASSGNPGI 95
>ref|WP_042420732.1| ribonuclease H [Geomicrobium sp. JCM 19038]
dbj|GAK10059.1| ribonuclease HI-related protein 3 [Geomicrobium sp. JCM 19038]
Length = 210
Score = 61.6 bits (148), Expect = 5e-09
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMT 182
YV++ GR+PG+Y W C +V+G+ GA ++ YPTYE+A+RAF +
Sbjct: 7 YVVWKGRKPGIYTTWAECESEVKGFKGARFKSYPTYEEAKRAFQS 51
>dbj|GAK01363.1| LOW QUALITY PROTEIN: ribonuclease HI-related protein 3
[Geomicrobium sp. JCM 19055]
Length = 213
Score = 61.6 bits (148), Expect = 5e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQLNQST 227
YV++ GR+PG+Y W C +V+G+ GA ++ YPTYE+A++AF + + Q QST
Sbjct: 7 YVVWKGRKPGIYTTWAECEAEVKGFKGARFKSYPTYEEAKQAFQSGKSVV-ASTQKKQST 65
Query: 228 PIAMGQNVAFTSI----SQISANQAMTGNDG 308
QN TS+ + IS + GN G
Sbjct: 66 R-TTNQNQRKTSLYYETTSISVDAGTHGNPG 95
>ref|WP_080317851.1| ribonuclease H [Croceivirga radicis]
gb|OQD44338.1| ribonuclease H [Croceivirga radicis]
Length = 210
Score = 61.2 bits (147), Expect = 6e-09
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERA----FMTY*GLYDDGNQL 215
YV++ G++ G+Y +W C Q++G GA Y+ +PT+E+A++A + Y G N L
Sbjct: 7 YVVWKGKKTGVYENWEDCKSQIQGIEGAQYKSFPTFEEAKKAYKGNYADYKGKKSKSNSL 66
Query: 216 NQSTPIAMGQNVAFTSISQISANQAMTGNDGV 311
+ + +GQ + + IS + A +GN G+
Sbjct: 67 SPEALLKIGQ----PNYNSISVDAASSGNPGI 94
>ref|WP_010519571.1| ribonuclease H [Mesoflavibacter zeaxanthinifaciens]
Length = 210
Score = 61.2 bits (147), Expect = 6e-09
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAF----MTY*GLYDDGNQL 215
YV++ G++ G+Y W C Q++G GA Y+ +PT+E+A++AF Y G N L
Sbjct: 7 YVVWKGKKTGVYEKWEDCKSQIQGVEGAQYKSFPTFEEAKKAFKGNYADYKGKKTKSNSL 66
Query: 216 NQSTPIAMGQNVAFTSISQISANQAMTGNDGV 311
+ + +GQ + + IS + A +GN G+
Sbjct: 67 SPEALLKIGQ----PNYNSISVDAASSGNPGI 94
>ref|WP_093977520.1| ribonuclease H [Arenibacter algicola]
gb|ASO04546.1| ribonuclease H [Arenibacter algicola]
Length = 211
Score = 61.2 bits (147), Expect = 6e-09
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDD-GNQLNQS 224
Y ++ G RPG+Y W C + Y GA Y+ +PT+E+A++A Y G YDD + N S
Sbjct: 8 YTVWKGSRPGIYTSWKDCKAAISNYKGAQYKSFPTFEEAKKA---YNGNYDDYKGKKNTS 64
Query: 225 TPIAMGQ--NVAFTSISQISANQAMTGNDGV 311
+ ++ Q + + + IS + A +GN G+
Sbjct: 65 STLSKEQISKIGDPNYNSISVDAASSGNPGI 95
>gb|KZV19582.1| proton pump-interactor 1-like [Dorcoceras hygrometricum]
Length = 125
Score = 59.3 bits (142), Expect = 8e-09
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +3
Query: 45 TYVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY 185
+YV+F+GR+PG+Y W +EQVRG+SGA Y+ + T ++AE AF Y
Sbjct: 6 SYVVFIGRQPGVYDKWCEASEQVRGFSGACYKGFDTKKEAEEAFSCY 52
>ref|WP_004330562.1| ribonuclease H [Porphyromonas asaccharolytica]
gb|EFR35371.1| ribonuclease H family protein [Porphyromonas asaccharolytica
PR426713P-I]
Length = 232
Score = 61.2 bits (147), Expect = 8e-09
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +3
Query: 33 RMRTTYVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQ 212
+ R YV++ G RPG+Y DW C Q+ G+ GA Y+ Y T E A+ AF YD+G +
Sbjct: 4 KQRKWYVVWEGYRPGIYDDWQDCKMQIEGFQGAKYKSYLTAEQAQEAFELG---YDEGRK 60
Query: 213 LNQSTPIAMGQN 248
L Q +A Q+
Sbjct: 61 LGQQHRVAKPQS 72
>ref|WP_099305018.1| ribonuclease H [Bacillus sp. Marseille-P3800]
Length = 210
Score = 60.8 bits (146), Expect = 9e-09
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQLNQST 227
YV++ GR+PG+Y W C +QV+GY GA ++ Y + +AERA+ +
Sbjct: 7 YVVWAGRKPGIYRTWADCEKQVKGYKGARFKSYESQTEAERAY--------------EGK 52
Query: 228 PIAMGQNVAFTSISQISANQA 290
P + G A S+ Q+S+N A
Sbjct: 53 PTSTGTKKAAKSVKQVSSNTA 73
>ref|WP_013759884.1| ribonuclease H [Porphyromonas asaccharolytica]
gb|AEE12209.1| putative ribonuclease H1 [Porphyromonas asaccharolytica DSM 20707]
Length = 232
Score = 60.8 bits (146), Expect = 1e-08
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +3
Query: 33 RMRTTYVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQ 212
+ R YV++ G RPG+Y DW C Q+ G+ GA Y+ Y T E A+ AF YD+G +
Sbjct: 4 KQRKWYVVWEGYRPGVYDDWQDCKMQIEGFQGAKYKSYLTAEQAQEAFELG---YDEGRK 60
Query: 213 LNQSTPIAMGQN 248
L Q +A Q+
Sbjct: 61 LGQQHRVAKPQS 72
>ref|WP_026473938.1| ribonuclease H [Alkaliflexus imshenetskii]
Length = 205
Score = 60.1 bits (144), Expect = 2e-08
Identities = 31/87 (35%), Positives = 47/87 (54%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQLNQST 227
YV++ GR+PG+Y +W C EQ+ G+ A Y+ + T +AE AF + L ST
Sbjct: 7 YVVWKGRKPGIYNNWNDCKEQITGFEEARYKSFKTLAEAEMAFKSGKMLQPRSKSAYAST 66
Query: 228 PIAMGQNVAFTSISQISANQAMTGNDG 308
P A GQ + + +S + A +GN G
Sbjct: 67 PSAGGQPIR----NSLSVDAACSGNPG 89
>ref|WP_009534600.1| ribonuclease [Oribacterium parvum]
gb|EHL11910.1| hypothetical protein HMPREF9625_00740 [Oribacterium parvum ACB1]
gb|EJF13586.1| caulimovirus viroplasmin / ribonuclease HI multi-domain protein
[Oribacterium parvum ACB8]
Length = 235
Score = 60.5 bits (145), Expect = 2e-08
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +3
Query: 36 MRTTYVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMT 182
M Y + VGR+PG+Y +W C +QV G+SGA+Y+K+ T E+AE+ +T
Sbjct: 1 MENYYAVKVGRKPGIYLNWDDCKKQVHGFSGAIYKKWKTREEAEKYLLT 49
>ref|WP_097156661.1| ribonuclease H [Bacillus oleivorans]
emb|SNX66810.1| ribonuclease HI [Bacillus oleivorans]
Length = 206
Score = 60.1 bits (144), Expect = 2e-08
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQLNQST 227
YV++ GR PG+Y W C EQV GY GA Y+ +P+ ++A+ AF N + T
Sbjct: 8 YVVWAGRNPGIYTSWDECKEQVNGYQGAKYKSFPSEQEAKEAFAA-----GAANAYSSKT 62
Query: 228 PIAMGQNVAFTSI-SQISANQAMTGNDG 308
GQ V I + IS + A +GN G
Sbjct: 63 S-TTGQKVQADIIYNSISVDAACSGNPG 89
>gb|KZV25877.1| proton pump-interactor 1-like, partial [Dorcoceras hygrometricum]
Length = 121
Score = 58.2 bits (139), Expect = 2e-08
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +3
Query: 45 TYVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY 185
+YV+F+GR+PG+Y W +EQVRG+SGA Y+ + T ++AE A+ Y
Sbjct: 2 SYVVFIGRQPGVYDKWCEASEQVRGFSGACYKGFDTKKEAEEAYSCY 48
>ref|WP_018923404.1| hypothetical protein [Salsuginibacillus kocurii]
Length = 204
Score = 59.7 bits (143), Expect = 2e-08
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAF 176
YV++ GR+PG+Y W C EQV+GYSGA ++ +P+ E+AE AF
Sbjct: 7 YVVWKGRQPGIYSTWKECEEQVKGYSGASFKSFPSKEEAEAAF 49
>emb|CAN71683.1| hypothetical protein VITISV_040973 [Vitis vinifera]
Length = 375
Score = 60.8 bits (146), Expect = 2e-08
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +3
Query: 12 ISPRVGLRMRTT--YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY 185
+S + LRM YV+F R+ G+Y WP C EQV GY G +Y+ Y T+E+A RA++ Y
Sbjct: 254 LSQNLLLRMANDVYYVVFAVRKSGIYNSWPECQEQVVGYKGNVYKSYKTFEEARRAWVFY 313
Query: 186 *GLYDDGNQLNQSTPIAMGQNVAFTSISQISANQAM 293
+ N STP +G+ V +++ + ++ M
Sbjct: 314 EARVNCTE--NTSTP-NLGEEVNLSTLMEQKGDKGM 346
>ref|WP_103475149.1| ribonuclease H [Arenibacter catalasegens]
Length = 211
Score = 59.7 bits (143), Expect = 2e-08
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQLNQST 227
Y ++ G RPG+Y W C + Y GA Y+ +P++E A++AF G Y+D +T
Sbjct: 8 YTVWKGSRPGIYTSWKDCKSAITNYKGAQYKSFPSFEAAKKAFN---GDYEDYKGKKSNT 64
Query: 228 PI---AMGQNVAFTSISQISANQAMTGNDGV 311
P + Q + + + IS + A +GN G+
Sbjct: 65 PTLSKELLQKIGQPNYNSISVDAASSGNPGI 95
>ref|WP_097044190.1| ribonuclease H [Spongiibacterium pacificum]
emb|SNY94843.1| ribonuclease HI [Spongiibacterium pacificum]
Length = 211
Score = 59.7 bits (143), Expect = 2e-08
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAF----MTY*GLYDDGNQL 215
YV++ G+RPG+Y W C Q+ G+ GA Y+ +P ++ A++AF + Y G ++L
Sbjct: 8 YVVWKGKRPGIYESWADCKTQIEGFKGAQYKSFPAFDQAKKAFNGNYLEYKGKSKGKSEL 67
Query: 216 NQSTPIAMGQNVAFTSISQISANQAMTGNDG 308
+ + +G+ + + IS + A +GN G
Sbjct: 68 SPEELLKIGE----PNYNSISVDAASSGNPG 94
>gb|PCJ95322.1| ribonuclease H [Flavobacteriaceae bacterium]
Length = 211
Score = 59.7 bits (143), Expect = 2e-08
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = +3
Query: 48 YVIFVGRRPGLYFDWPSCNEQVRGYSGALYRKYPTYEDAERAFMTY*GLYDDGNQLNQST 227
Y ++ G RPG+Y W C + + GY GA Y+ + ++ DA++A Y G+YDD S
Sbjct: 8 YTVWKGNRPGVYAKWSDCKKAITGYKGAQYKSFMSFADAKKA---YNGIYDDYKGKKTSK 64
Query: 228 PIAMGQ---NVAFTSISQISANQAMTGNDGV 311
P + + + + IS + A +GN G+
Sbjct: 65 PTLSKEELLKIGKPNYNSISVDAASSGNPGI 95