BLASTX nr result
ID: Ophiopogon25_contig00028708
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ophiopogon25_contig00028708 (1352 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 149,584,005 sequences; 54,822,741,787 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CDP17738.1| unnamed protein product [Coffea canephora] 208 6e-56 gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 209 2e-55 emb|CDP17739.1| unnamed protein product [Coffea canephora] 187 8e-51 emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 192 3e-50 gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium bar... 166 7e-41 gb|PNX57796.1| putative retrotransposon Ty1-copia subclass prote... 150 3e-38 gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 153 6e-37 gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro... 154 2e-36 gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo... 152 7e-36 gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo... 152 7e-36 gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo... 152 7e-36 gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo... 152 7e-36 gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo... 152 7e-36 gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense] 150 2e-35 gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna ... 146 2e-35 gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 145 3e-35 gb|AOZ57162.1| integrase, partial [Coccinia grandis] 139 9e-35 dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 148 1e-34 gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 146 1e-34 gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 147 2e-34 >emb|CDP17738.1| unnamed protein product [Coffea canephora] Length = 798 Score = 208 bits (529), Expect = 6e-56 Identities = 146/435 (33%), Positives = 222/435 (51%), Gaps = 35/435 (8%) Frame = -2 Query: 1201 VAKDPCLKCK**GHWIKDCLEWKNVNMRKGNASQTSETNXXXXXXXXXXXSIFSLSMLL- 1025 VAKD C C+ GHW KDC + K +KG A Q + N ++S L Sbjct: 251 VAKDECAFCREKGHWKKDCPKLK----KKGKAPQ--DVNVAECKSDAESDFSLAVSRLTS 304 Query: 1024 --DVNLLESF---------EWM-----IYTGAIYLGCSK------------RRYSG*VPF 929 D +L+S EW + G +Y+G R + G Sbjct: 305 HPDEWILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGSTRI 364 Query: 928 ISEYR-IR*LESCPL*GMFL**RIILTWWVLCKLRPKVKIEKGVLNTTSESLIVMKSIRK 752 + + R + L+ R +++ +L +V++ G+L TS +L+++K +RK Sbjct: 365 LKDVRYVPNLK-----------RSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRK 413 Query: 751 RNLYYLRXXXXXXXXXXXXXXXXXT-----RLSHLRLNHTDKRSLRAFAR*GLLDDALTC 587 NLYY + +L H+RL ++SL+ A+ GLL C Sbjct: 414 NNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVC 473 Query: 586 RVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRNDKEFLELVHMDIWGPTKTASIGG 407 ++E + + + +K+KF + N K L+ VH D+WGP KT S+GG Sbjct: 474 KLEFCEHCVLEKQ-------------RKVKFGTGIHNTKGILDYVHSDVWGPAKTPSLGG 520 Query: 406 HHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVK 227 ++FV+F+D++SR WV M K E+L+++ KWK VE QTGRKI+ L+ DN G +Y Sbjct: 521 RYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGG--EYKS 578 Query: 226 DPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNRTLLERVRCLLSNSGVEYTLWVEALT 47 DPF+KIC + GI R FI R+ Q +GV++ MN+TL+E+VRC+LSN+G+ W EA+T Sbjct: 579 DPFQKICQECGIVRHFIVRKI--PQQNGVSEHMNKTLVEKVRCMLSNAGLGRKFWAEAVT 636 Query: 46 YACHLMNRLPNAAIG 2 YA HL+NRLP++AIG Sbjct: 637 YAQHLVNRLPSSAIG 651 >gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] Length = 1032 Score = 209 bits (531), Expect = 2e-55 Identities = 143/429 (33%), Positives = 212/429 (49%), Gaps = 29/429 (6%) Frame = -2 Query: 1201 VAKDPCLKCK**GHWIKDCLEWKNVNMRKGNASQTSETNXXXXXXXXXXXSIFSLSMLLD 1022 V KD C C+ GHW KDC + KN KG + +++N S+ + Sbjct: 15 VGKDECAFCREKGHWKKDCPKLKN----KGQSKTVADSNVAEYVDDS------DCSLAVS 64 Query: 1021 VNLLESFEWMIYTGAIYLGCSKRRY--------------SG*VPFIS-----------EY 917 + S W++ +G C R + + VP + + Sbjct: 65 GSTSSSSAWLLDSGCSNHMCPNREWFYDFRELEEGVVYTANDVPLTTHGIGSIRLKNRDG 124 Query: 916 RIR*LESCPL*GMFL**RIILTWWVLCKLRPKVKIEKGVLNTTSESLIVMKSIRKRN-LY 740 IR L+ R +++ L + V E GV+ S +L+VMK +RK N LY Sbjct: 125 AIRTLKDVRFVPSLS--RNLISVGALEEKGFTVHAEGGVMKIISGALVVMKGVRKNNRLY 182 Query: 739 YLRXXXXXXXXXXXXXXXXXT---RLSHLRLNHTDKRSLRAFAR*GLLDDALTCRVESRD 569 Y + +L H+RL H +RSL + GLL + C++ D Sbjct: 183 YYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNIQACKL---D 239 Query: 568 LVRMTIRGG*NLTSLFTV*HQKMKFDIVVRNDKEFLELVHMDIWGPTKTASIGGHHWFVS 389 ++G ++KF + + K L+ VH D+WGP+KTAS+ G+H++V+ Sbjct: 240 FCEHCVKGK----------KTRVKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVT 289 Query: 388 FVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKI 209 FVD++SR WV M K EVL ++ KWKK +E QTGRKI+ + DN G +Y DPF+K Sbjct: 290 FVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGG--EYTSDPFKKA 347 Query: 208 CLKEGIRRLFIPREANRKQLDGVAKLMNRTLLERVRCLLSNSGVEYTLWVEALTYACHLM 29 C + GI R F + + Q +GVA+ MNRTLLE+VRC+LSN+G+ W EA+ YA HL+ Sbjct: 348 CEESGIVRHFTVK--HTPQQNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLI 405 Query: 28 NRLPNAAIG 2 NRLP++AIG Sbjct: 406 NRLPSSAIG 414 >emb|CDP17739.1| unnamed protein product [Coffea canephora] Length = 435 Score = 187 bits (475), Expect = 8e-51 Identities = 106/273 (38%), Positives = 159/273 (58%), Gaps = 5/273 (1%) Frame = -2 Query: 805 GVLNTTSESLIVMKSIRKRNLYYLRXXXXXXXXXXXXXXXXXT-----RLSHLRLNHTDK 641 G+L TS +L+++K +RK LYY + +L H+RL H + Sbjct: 4 GILKVTSGALVMLKGVRKNILYYYQGSIVVGTAAATTSSSSKKDAEATKLWHMRLGHAGE 63 Query: 640 RSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRNDKEFL 461 +SL+ A+ GLL C++E + + + +K+KF + N K L Sbjct: 64 KSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQ-------------RKVKFGTGIHNTKGIL 110 Query: 460 ELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTG 281 + VH ++WGP KT S+GG ++FV+F+D++SR WV M K EVLE++ KWK VE QTG Sbjct: 111 DYVHSNVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTG 170 Query: 280 RKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNRTLLERVR 101 RKI+ L+ DN G +Y DPF+KI + GI + F R+ Q +GV++ MN+TL+E+V Sbjct: 171 RKIKILRTDNGG--EYKSDPFQKIGQECGIVQHFTVRKT--PQQNGVSERMNKTLVEKVH 226 Query: 100 CLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 C+LSN+ + W E +TYA HL+NRLP++AIG Sbjct: 227 CMLSNARLGRKFWAETVTYAQHLVNRLPSSAIG 259 >emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris] Length = 813 Score = 192 bits (489), Expect = 3e-50 Identities = 140/426 (32%), Positives = 203/426 (47%), Gaps = 27/426 (6%) Frame = -2 Query: 1201 VAKDPCLKCK**GHWIKDCLEWKNVNMRKGNASQTSETNXXXXXXXXXXXSIFSLSMLLD 1022 VAKD C C GHW KDC + + +K Q + I SLS Sbjct: 165 VAKDECAFCHEKGHWKKDCPKLQ----KKEKVPQDANVAECKSDVESDISLIVSLSASSY 220 Query: 1021 VNLLESFEWMIYTGAIYLGCSKRRY-------SG*VPFISE---YRIR*LESCPL*GMFL 872 + EW++ +G Y C R + G V ++ + + S L Sbjct: 221 PD-----EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDG 275 Query: 871 **RIILTWWVLCKLRPK-------------VKIEKGVLNTTSESLIVMKSIRKRNLYYLR 731 RI+ + KL+ V + G+L T +L+++K + K NLYY + Sbjct: 276 STRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYYQ 335 Query: 730 XXXXXXXXXXXXXXXXXT----RLSHLRLNHTDKRSLRAFAR*GLLDDALTCRVESRDLV 563 +L H+RL H ++SL+ + GLL C++E Sbjct: 336 GSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLE---FC 392 Query: 562 RMTIRGG*NLTSLFTV*HQKMKFDIVVRNDKEFLELVHMDIWGPTKTASIGGHHWFVSFV 383 + G +++KF + N K L+ VH D+WGP KT SIGG H+FV+FV Sbjct: 393 EHCVLGK----------QRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFV 442 Query: 382 DEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKICL 203 D++SR WV M K +VLE++ KWK VE TGRKI+ LQ DN G +Y DPF +C Sbjct: 443 DDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGG--EYKSDPFLNVCQ 500 Query: 202 KEGIRRLFIPREANRKQLDGVAKLMNRTLLERVRCLLSNSGVEYTLWVEALTYACHLMNR 23 GI R F R+ Q +GV++ MN+TL+E+V C+LSN+ + W EA+TYA HL+NR Sbjct: 501 DCGIVRHFTVRKT--PQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNR 558 Query: 22 LPNAAI 5 LP++AI Sbjct: 559 LPSSAI 564 >gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium barbadense] Length = 1034 Score = 166 bits (421), Expect = 7e-41 Identities = 82/160 (51%), Positives = 109/160 (68%) Frame = -2 Query: 505 KMKFDIVVRNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVL 326 ++KF + N KE L+ VH D+WGPTK AS+GG H+FV+FVD+YSR WV M RK EVL Sbjct: 315 RIKFGSAIHNTKEILDYVHSDVWGPTKVASLGGMHYFVTFVDDYSRKVWVYLMKRKNEVL 374 Query: 325 EVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLD 146 +V+ KWKK VE Q RK++ L+ DN +Y DPF ++C EGI R F R+ Q + Sbjct: 375 DVFLKWKKMVETQADRKVKRLRSDNG--TEYKNDPFLQVCHDEGIVRHFTVRDT--PQQN 430 Query: 145 GVAKLMNRTLLERVRCLLSNSGVEYTLWVEALTYACHLMN 26 GVA+ MNRT+LE+VRC+LSN+G+ W EA+TY + N Sbjct: 431 GVAERMNRTILEKVRCMLSNAGLGKEFWAEAVTYITMMKN 470 >gb|PNX57796.1| putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] Length = 285 Score = 150 bits (378), Expect = 3e-38 Identities = 90/278 (32%), Positives = 140/278 (50%), Gaps = 4/278 (1%) Frame = -2 Query: 823 KVKIEKGVLNTTSESLIVMKSIRKRNLYYLRXXXXXXXXXXXXXXXXXT----RLSHLRL 656 K+ +E G L SL+VMK +R RNLY L R+ H+RL Sbjct: 6 KIILENGGLKVVRGSLVVMKGVRHRNLYTLMGETVTGDLAVGINRSKDQTECTRMWHMRL 65 Query: 655 NHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRN 476 H ++ L GLL + + + G +++F Sbjct: 66 GHMSEKGLSLLGEKGLLKNM---EKPCMEFCEHCVYGK----------AHRLRFSSSKHK 112 Query: 475 DKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCV 296 + L+ VH D+WGP S GG +FV++VD++SRY W+ + K EV + +K WK V Sbjct: 113 SRGILDYVHTDVWGPAPVTSKGGSRYFVTYVDDHSRYAWIYFLKHKNEVFDNFKCWKAMV 172 Query: 295 ELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNRTL 116 E +TGRK++ L+ DN +Y F++ C +EGI R + R Q +GVA+ +NRTL Sbjct: 173 ENRTGRKLKTLRSDNG--TEYTDGAFKRFCDQEGIVRHWTVR--GTPQQNGVAERLNRTL 228 Query: 115 LERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 LE+ RC+ SNSG+ W E++ A +++NR P++++G Sbjct: 229 LEKARCMRSNSGLGREWWAESVATASYVVNRSPHSSLG 266 >gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] Length = 609 Score = 153 bits (386), Expect = 6e-37 Identities = 94/277 (33%), Positives = 140/277 (50%), Gaps = 3/277 (1%) Frame = -2 Query: 823 KVKIEKGVLNTTSESLIVMKSIRKRNLYYLRXXXXXXXXXXXXXXXXXTRLSHL---RLN 653 K +E GV+ + S +V++ I+K NLY L+ L+HL RL Sbjct: 295 KCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGSTNLISESVSVADKHTPDLTHLWHMRLG 354 Query: 652 HTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRND 473 H +R + + LL D V+ + G H ++KF Sbjct: 355 HMSERGMMVLRKQKLLGDHT---VKELKFCEHCVVGK----------HHRIKFPKAQHTT 401 Query: 472 KEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVE 293 K L+ VH D WGP++ S+GG +F+S +D+YS W+ M K + + +K+WK VE Sbjct: 402 KSTLDYVHSDCWGPSRVPSLGGGRYFLSIIDDYSGMTWIFIMKHKNQAFKYFKEWKILVE 461 Query: 292 LQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNRTLL 113 QTG++I+ L+ DN ++ F C KEGI R + R N Q +GVA+ MNRTLL Sbjct: 462 NQTGKRIKRLRTDNG--LEFCSAEFNDYCKKEGIVRQYTVR--NTPQQNGVAERMNRTLL 517 Query: 112 ERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 E+ R LLSN+G+ + W EA+ AC+L+N P+ IG Sbjct: 518 EKRRYLLSNAGLTKSFWAEAVNTACYLVNGSPSTIIG 554 >gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum] Length = 1309 Score = 154 bits (388), Expect = 2e-36 Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 1/273 (0%) Frame = -2 Query: 820 VKIEKGVLNTTSESLIVMKSIRKRNLYYLRXXXXXXXXXXXXXXXXXTRLSHLRLNHTDK 641 VKIE G + SL VM+ + LY L RL HLRL H + Sbjct: 365 VKIEGGTMKVIKGSLTVMRGSQDNGLYILEASTVTGSSNAAVGGANKARLWHLRLGHVSE 424 Query: 640 RSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRNDKEFL 461 + L ++ LL +V+ + G + +++F K L Sbjct: 425 KGLVELSKQNLLGRD---KVDDLSFCDECVLGKCS----------RVRFKRSSTQSKGIL 471 Query: 460 ELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTG 281 + VH D+WGP++ AS GG +++S +D+YSR WV + K E + +K WK VE QTG Sbjct: 472 DYVHSDLWGPSRVASRGGARYYISVIDDYSRKLWVVTLKSKDEAFKAFKDWKMMVETQTG 531 Query: 280 RKIQGLQFDNAGKQKYVKDPFRKICLKEGI-RRLFIPREANRKQLDGVAKLMNRTLLERV 104 +KI+ L+ DN +Y F+ C +EGI R +P N Q +G+A+ MNRT+LERV Sbjct: 532 KKIKKLRTDNG--LEYCSTEFKDFCKQEGIVRHYTVP---NTPQQNGLAERMNRTILERV 586 Query: 103 RCLLSNSGVEYTLWVEALTYACHLMNRLPNAAI 5 RC+L++SG+ W EA+ A +L+NR P+ A+ Sbjct: 587 RCMLADSGLPRMFWAEAVVTASYLINRCPSTAL 619 >gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1256 Score = 152 bits (383), Expect = 7e-36 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 3/280 (1%) Frame = -2 Query: 832 LRPKVKIEKGVLNTTSESLIVMKSIR-KRNLYYL--RXXXXXXXXXXXXXXXXXTRLSHL 662 L+ K+ +E G+L +L+VMK+ + NLY L T + H Sbjct: 319 LKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQEEATMMWHR 378 Query: 661 RLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVV 482 RL H +R L+ A LL + + T +++F V Sbjct: 379 RLGHMSERGLKILAERNLLSGLKMVTLPFCE-------------HCVTSKQHRLQFAKVT 425 Query: 481 RNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKK 302 K L+L+H D+W + S+GG +FVSF+D+YSR WV P+ +K +V V+K++K Sbjct: 426 TRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKA 484 Query: 301 CVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNR 122 VEL TG++I+ L+ DN G +Y+ F C +EGI+R F A+ Q +GVA+ MNR Sbjct: 485 QVELDTGKRIKCLRTDNGG--EYIDGDFLAFCKQEGIKRQF--TVAHTPQQNGVAERMNR 540 Query: 121 TLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 TLLER R +L +G+ + W EA+ AC+L+NR P+ AIG Sbjct: 541 TLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 580 >gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1256 Score = 152 bits (383), Expect = 7e-36 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 3/280 (1%) Frame = -2 Query: 832 LRPKVKIEKGVLNTTSESLIVMKSIR-KRNLYYL--RXXXXXXXXXXXXXXXXXTRLSHL 662 L+ K+ +E G+L +L+VMK+ + NLY L T + H Sbjct: 319 LKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQEEATMMWHR 378 Query: 661 RLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVV 482 RL H +R L+ A LL + + T +++F V Sbjct: 379 RLGHMSERGLKILAERNLLSGLKMVTLPFCE-------------HCVTSKQHRLQFAKVT 425 Query: 481 RNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKK 302 K L+L+H D+W + S+GG +FVSF+D+YSR WV P+ +K +V V+K++K Sbjct: 426 TRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKA 484 Query: 301 CVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNR 122 VEL TG++I+ L+ DN G +Y+ F C +EGI+R F A+ Q +GVA+ MNR Sbjct: 485 QVELDTGKRIKCLRTDNGG--EYIDGDFLAFCKQEGIKRQF--TVAHTPQQNGVAERMNR 540 Query: 121 TLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 TLLER R +L +G+ + W EA+ AC+L+NR P+ AIG Sbjct: 541 TLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 580 >gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1256 Score = 152 bits (383), Expect = 7e-36 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 3/280 (1%) Frame = -2 Query: 832 LRPKVKIEKGVLNTTSESLIVMKSIR-KRNLYYL--RXXXXXXXXXXXXXXXXXTRLSHL 662 L+ K+ +E G+L +L+VMK+ + NLY L T + H Sbjct: 319 LKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQEEATMMWHR 378 Query: 661 RLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVV 482 RL H +R L+ A LL + + T +++F V Sbjct: 379 RLGHMSERGLKILAERNLLSGLKMVTLPFCE-------------HCVTSKQHRLQFAKVT 425 Query: 481 RNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKK 302 K L+L+H D+W + S+GG +FVSF+D+YSR WV P+ +K +V V+K++K Sbjct: 426 TRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKA 484 Query: 301 CVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNR 122 VEL TG++I+ L+ DN G +Y+ F C +EGI+R F A+ Q +GVA+ MNR Sbjct: 485 QVELDTGKRIKCLRTDNGG--EYIDGDFLAFCKQEGIKRQF--TVAHTPQQNGVAERMNR 540 Query: 121 TLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 TLLER R +L +G+ + W EA+ AC+L+NR P+ AIG Sbjct: 541 TLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 580 >gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1305 Score = 152 bits (383), Expect = 7e-36 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 3/280 (1%) Frame = -2 Query: 832 LRPKVKIEKGVLNTTSESLIVMKSIR-KRNLYYL--RXXXXXXXXXXXXXXXXXTRLSHL 662 L+ K+ +E G+L +L+VMK+ + NLY L T + H Sbjct: 368 LKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQEEATMMWHR 427 Query: 661 RLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVV 482 RL H +R L+ A LL + + T +++F V Sbjct: 428 RLGHMSERGLKILAERNLLSGLKMVTLPFCE-------------HCVTSKQHRLQFAKVT 474 Query: 481 RNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKK 302 K L+L+H D+W + S+GG +FVSF+D+YSR WV P+ +K +V V+K++K Sbjct: 475 TRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKA 533 Query: 301 CVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNR 122 VEL TG++I+ L+ DN G +Y+ F C +EGI+R F A+ Q +GVA+ MNR Sbjct: 534 QVELDTGKRIKCLRTDNGG--EYIDGDFLAFCKQEGIKRQF--TVAHTPQQNGVAERMNR 589 Query: 121 TLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 TLLER R +L +G+ + W EA+ AC+L+NR P+ AIG Sbjct: 590 TLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 629 >gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1305 Score = 152 bits (383), Expect = 7e-36 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 3/280 (1%) Frame = -2 Query: 832 LRPKVKIEKGVLNTTSESLIVMKSIR-KRNLYYL--RXXXXXXXXXXXXXXXXXTRLSHL 662 L+ K+ +E G+L +L+VMK+ + NLY L T + H Sbjct: 368 LKCKIHVEGGILKVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQEEATMMWHR 427 Query: 661 RLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVV 482 RL H +R L+ A LL + + T +++F V Sbjct: 428 RLGHMSERGLKILAERNLLSGLKMVTLPFCE-------------HCVTSKQHRLQFAKVT 474 Query: 481 RNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKK 302 K L+L+H D+W + S+GG +FVSF+D+YSR WV P+ +K +V V+K++K Sbjct: 475 TRSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKA 533 Query: 301 CVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNR 122 VEL TG++I+ L+ DN G +Y+ F C +EGI+R F A+ Q +GVA+ MNR Sbjct: 534 QVELDTGKRIKCLRTDNGG--EYIDGDFLAFCKQEGIKRQF--TVAHTPQQNGVAERMNR 589 Query: 121 TLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 TLLER R +L +G+ + W EA+ AC+L+NR P+ AIG Sbjct: 590 TLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIG 629 >gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense] Length = 876 Score = 150 bits (379), Expect = 2e-35 Identities = 92/270 (34%), Positives = 139/270 (51%), Gaps = 1/270 (0%) Frame = -2 Query: 811 EKGVLNTTSESLIVMKSIRKR-NLYYLRXXXXXXXXXXXXXXXXXTRLSHLRLNHTDKRS 635 ++ +L + +L VM+ R N+Y L T+L HLRL H +R Sbjct: 296 DRDILKVSKGALTVMRVKRTAGNIYKLLGNTVVGDVASVESDNDATKLWHLRLGHLSERG 355 Query: 634 LRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRNDKEFLEL 455 + + LL +C++ DL + + G +++F + + L+ Sbjct: 356 MMELHKRSLLKGVCSCKM---DLCKYCVLGK----------QCRVRFKPMKHKTEGILDY 402 Query: 454 VHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRK 275 VH D+WGPT+ AS+GG +FV+F D++SR WV M +K EV +K WK VE QTGRK Sbjct: 403 VHSDVWGPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRK 462 Query: 274 IQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNRTLLERVRCL 95 I+ L+ DN +Y F K C + GI+R F R+ Q +GVA+ MN +L ER RCL Sbjct: 463 IKYLRSDNG--TEYTNSQFEKFCEQHGIQRHFSVRKT--PQQNGVAERMNMSLTERARCL 518 Query: 94 LSNSGVEYTLWVEALTYACHLMNRLPNAAI 5 +G+ W E + AC+L+NR P A++ Sbjct: 519 QLKAGLSKGFWAETINMACYLINRSPRASL 548 >gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna angularis] Length = 473 Score = 146 bits (369), Expect = 2e-35 Identities = 85/222 (38%), Positives = 124/222 (55%) Frame = -2 Query: 667 HLRLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDI 488 H RL H +R L+ A LL + T + + T ++KF Sbjct: 39 HYRLGHMSERGLKILADHNLLPELKTFNLPFCE-------------HCVTSKQHRLKFAK 85 Query: 487 VVRNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKW 308 V K L+L+H D+W + S+GG +FVSF+D+YSR WV P+ +K +V V+K++ Sbjct: 86 VTARSKHILDLIHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEF 144 Query: 307 KKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLM 128 K VEL+TG+ I+ L+ DN G +Y F C +EGI+R F A+ Q +GVA+ M Sbjct: 145 KAQVELETGKMIKCLRTDNGG--EYTDGDFLAFCKQEGIKRQF--TVAHTPQQNGVAERM 200 Query: 127 NRTLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAIG 2 NRTLLER R +L +G+ + W EA+ AC+L+NR P+ AIG Sbjct: 201 NRTLLERTRAMLKTTGLAKSFWAEAVKTACYLINRSPSTAIG 242 >gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] Length = 448 Score = 145 bits (367), Expect = 3e-35 Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 3/276 (1%) Frame = -2 Query: 823 KVKIEKGVLNTTSESLIVMKSIRKRNLYYLRXXXXXXXXXXXXXXXXXTRLS---HLRLN 653 K ++ GV+ S +VM+ +K NLY L+ L+ H+RL Sbjct: 134 KCNVKNGVMEIKRGSTVVMRGFKKGNLYMLQGSTSSISESVSVAEKNIPDLTYLWHMRLG 193 Query: 652 HTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRND 473 H +R + +R LL + V+ + G ++KF + Sbjct: 194 HMSERGMMILSRQQLLGNHT---VKELRFCEHCVFGK----------QHRIKFPKAQHST 240 Query: 472 KEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVE 293 K L+ +H D WGP++ S+GG +F+S +D+YSR W+ K + + +K+WK +E Sbjct: 241 KSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILME 300 Query: 292 LQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNRTLL 113 Q ++++ L+ DN ++ F C EGI R + R N Q +GVA+ MN+TLL Sbjct: 301 KQISKRVKRLRTDNG--LEFCSKEFNDFCKAEGIARQYTVR--NTPQQNGVAERMNKTLL 356 Query: 112 ERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAI 5 ER RCLLSN+G+ + W EA++ C+L+NR P+ I Sbjct: 357 ERARCLLSNAGLSRSFWAEAISTTCYLINRSPSTVI 392 >gb|AOZ57162.1| integrase, partial [Coccinia grandis] Length = 226 Score = 139 bits (349), Expect = 9e-35 Identities = 80/223 (35%), Positives = 123/223 (55%) Frame = -2 Query: 673 LSHLRLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKF 494 L H+RL H ++ ++ +R LL C + +DL +F H++ KF Sbjct: 1 LWHMRLGHMSEKGMQILSRRDLL-----CGHKVQDLEFCE-------HCVFGKLHRR-KF 47 Query: 493 DIVVRNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYK 314 + L+ +H D WGP++ S+GG +F+S +D+YSR WV M K + + +K Sbjct: 48 SKGAHRTRGTLDYIHSDCWGPSRVESVGGSRYFMSIIDDYSRMTWVFMMKHKSDAFKNFK 107 Query: 313 KWKKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAK 134 +WK +E QTG+KI+ L+ DN ++ F + C EGI R R+ Q +GVA+ Sbjct: 108 QWKTLIENQTGKKIKRLRTDNG--LEFCGSEFNEFCKAEGIVRHHTVRDT--PQQNGVAE 163 Query: 133 LMNRTLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAI 5 MN+TLLER RC+LSN+G+ W EA+ AC+L+NR P+ I Sbjct: 164 RMNQTLLERARCMLSNAGLSRRFWAEAVNTACYLINRGPHTGI 206 >dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] Length = 1298 Score = 148 bits (374), Expect = 1e-34 Identities = 97/287 (33%), Positives = 146/287 (50%), Gaps = 2/287 (0%) Frame = -2 Query: 859 ILTWWVLCKLRPKVKIEKGVLNTTSESLIVMKSIR-KRNLYYLRXXXXXXXXXXXXXXXX 683 +L++ +L +++ +KGV+ +L+VMK + NLY L+ Sbjct: 351 LLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAEASVAACSP 410 Query: 682 XTRLS-HLRLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQ 506 + L H +L H + D + VE + + +T T Sbjct: 411 DSTLLWHQKLGH-------------MSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQH 457 Query: 505 KMKFDIVVRNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVL 326 ++KF K LELVH D+W S+GG +FVSF+D+YSR CWV P+ +K +V Sbjct: 458 RLKFSTSNSRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVF 516 Query: 325 EVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLD 146 +K +K VEL +G+KI+ + DN G +Y + F C KEGI+R F A Q + Sbjct: 517 ATFKAFKARVELDSGKKIKCFRTDNGG--EYTSEEFDDFCKKEGIKRQF--TVAYTPQQN 572 Query: 145 GVAKLMNRTLLERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAI 5 GVA+ MNRTLLER R +L +G+E + W EA+ AC+L+NR P+ AI Sbjct: 573 GVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAI 619 >gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 593 Score = 146 bits (368), Expect = 1e-34 Identities = 116/410 (28%), Positives = 181/410 (44%), Gaps = 25/410 (6%) Frame = -2 Query: 1195 KDPCLKCK**GHWIKDCLEWKNVNMRKGNASQTSETNXXXXXXXXXXXSIFSLSMLLD-- 1022 +D C CK GHW KDC + +N A + S F +LD Sbjct: 212 RDICNYCKEPGHWKKDCPKKRNQKSVVVAAQEDSSFENELVLSIVDNHQHFVEQWVLDSG 271 Query: 1021 --VNLLESFEWMI-----YTGAIYLG----CSK--------RRYSG*VPFISEYR-IR*L 902 ++ + W + + G +++G C + + G + ++E R + L Sbjct: 272 CSYHMCPNRSWFLTYEKKFGGDVFMGNDMACKTISIGTIQIKMHDGVIRTLTEVRHVPDL 331 Query: 901 ESCPL*GMFL**RIILTWWVLCKLRPKVKIEKGVLNTTSESLIVMKSIRKRNLYYLRXXX 722 + + +++ VL K +E GV+ S IV++ I+K NLY L+ Sbjct: 332 K-----------KNLISVGVLDTKGFKCNVEGGVMEINKGSTIVIRGIKKGNLYMLQGST 380 Query: 721 XXXXXXXXXXXXXXT---RLSHLRLNHTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTI 551 RL H+RL H +R + ++ LL D V+ + Sbjct: 381 NLISESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLLRDHT---VKELKFCEHCV 437 Query: 550 RGG*NLTSLFTV*HQKMKFDIVVRNDKEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYS 371 G H + KF K L+ VH + WGP++ S+GG +F+S +D+YS Sbjct: 438 LGK----------HHRSKFPKAQHTTKSTLDYVHSNCWGPSRVPSLGGGRYFLSIIDDYS 487 Query: 370 RYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGI 191 R W+ M K + + +K+WK VE QTG++I+ L+ DN+ ++ F C KEGI Sbjct: 488 RMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNS--LEFCSAEFNDYCKKEGI 545 Query: 190 RRLFIPREANRKQLDGVAKLMNRTLLERVRCLLSNSGVEYTLWVEALTYA 41 R + R N Q +GVAK MNRTLLE+ RCLLSN + + W EA+ A Sbjct: 546 VRQYTVR--NTPQQNGVAKRMNRTLLEKARCLLSNDSLTKSFWAEAVNTA 593 >gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 147 bits (372), Expect = 2e-34 Identities = 94/276 (34%), Positives = 142/276 (51%), Gaps = 3/276 (1%) Frame = -2 Query: 823 KVKIEKGVLNTTSESLIVMKSIR-KRNLYYLRXXXXXXXXXXXXXXXXXTR--LSHLRLN 653 K+ E G+L +L+VMK+ + NLY L + H RL Sbjct: 372 KIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLG 431 Query: 652 HTDKRSLRAFAR*GLLDDALTCRVESRDLVRMTIRGG*NLTSLFTV*HQKMKFDIVVRND 473 H +R L+ LL T + + ++ + ++KF V Sbjct: 432 HMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQ-------------HRLKFARVTTRS 478 Query: 472 KEFLELVHMDIWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVE 293 K L+L+H D+W + S+GG +FVSF+D+YSR WV P+ +K +V V+K +K +E Sbjct: 479 KHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIE 537 Query: 292 LQTGRKIQGLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGVAKLMNRTLL 113 L+TG+KI+ L+ DN G +YV F C +EGI R F A+ Q +GVA+ MNRTLL Sbjct: 538 LETGKKIKCLRTDNGG--EYVDGEFLAFCKQEGIVRQF--TVAHTPQQNGVAERMNRTLL 593 Query: 112 ERVRCLLSNSGVEYTLWVEALTYACHLMNRLPNAAI 5 ER R +L +G+ + W EA+ AC+++NR P+ AI Sbjct: 594 ERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAI 629