BLASTX nr result

ID: Ophiopogon25_contig00028633 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00028633
         (379 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020261925.1| squamous cell carcinoma antigen recognized b...    56   1e-06
ref|XP_020261924.1| squamous cell carcinoma antigen recognized b...    56   1e-06

>ref|XP_020261925.1| squamous cell carcinoma antigen recognized by T-cells 3 isoform X2
           [Asparagus officinalis]
          Length = 832

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -2

Query: 378 NDRSDTSIPKPVSKEKHDDGVKLVGRTAFL--PRAVIPLGRTNKEAKAADNSEQPKSNDE 205
           N+   TS    V   + +  VK +GR  F   PRAV  L  +NKE K ADN E+PKSNDE
Sbjct: 765 NEHGGTSRTAKVVVTEGESEVKPIGRNTFFAAPRAVRSLAGSNKEPKGADNIEEPKSNDE 824

Query: 204 FRAM 193
           FRAM
Sbjct: 825 FRAM 828


>ref|XP_020261924.1| squamous cell carcinoma antigen recognized by T-cells 3 isoform X1
           [Asparagus officinalis]
 gb|ONK73079.1| uncharacterized protein A4U43_C04F26940 [Asparagus officinalis]
          Length = 848

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -2

Query: 378 NDRSDTSIPKPVSKEKHDDGVKLVGRTAFL--PRAVIPLGRTNKEAKAADNSEQPKSNDE 205
           N+   TS    V   + +  VK +GR  F   PRAV  L  +NKE K ADN E+PKSNDE
Sbjct: 781 NEHGGTSRTAKVVVTEGESEVKPIGRNTFFAAPRAVRSLAGSNKEPKGADNIEEPKSNDE 840

Query: 204 FRAM 193
           FRAM
Sbjct: 841 FRAM 844


Top