BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00028552
         (410 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010923721.1| PREDICTED: RNA polymerase II subunit 5-media...    55   4e-06

>ref|XP_010923721.1| PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           [Elaeis guineensis]
          Length = 346

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 23/46 (50%), Positives = 35/46 (76%)
 Frame = +2

Query: 2   PDPKENLHNSSDLKLKDTSDKVTSETDIMNFSGRKAFTGTVIEHTH 139
           P+PKENLH +S LKL+D+S+    +T  +  S R+AFTG+++EH+H
Sbjct: 266 PEPKENLHQASVLKLEDSSENSARQTFKIGSSSRRAFTGSIVEHSH 311