BLASTX nr result
ID: Ophiopogon25_contig00024510
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00024510
(609 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDP17738.1| unnamed protein product [Coffea canephora] 169 5e-45
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 166 4e-44
emb|CDP17739.1| unnamed protein product [Coffea canephora] 159 4e-43
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 163 9e-43
gb|PNX57796.1| putative retrotransposon Ty1-copia subclass prote... 134 5e-35
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 139 1e-34
gb|KYP35963.1| Retrovirus-related Pol polyprotein from transposo... 128 4e-33
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 135 6e-33
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 135 6e-33
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 135 6e-33
gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus... 134 6e-33
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 134 7e-33
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa] 134 7e-33
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 133 1e-32
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 133 2e-32
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 132 3e-32
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 133 3e-32
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 133 3e-32
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 133 3e-32
emb|CAJ86192.1| H0306F03.15 [Oryza sativa] 132 6e-32
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 169 bits (427), Expect = 5e-45
Identities = 89/205 (43%), Positives = 130/205 (63%), Gaps = 11/205 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSV------DDDHTRLWH 447
GL V M + L+VT G+L++++G + NLYY +GS ++ ++ D + T+LWH
Sbjct: 388 GLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWH 447
Query: 446 CRLGHATMDSLLGISRRGYIEGA-TCKLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLG A SL ++++G ++G CKL+ CEHC +K + VKFGT IH G+LD VH
Sbjct: 448 MRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHS 507
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
V GP+KT S+ G YFV+F+D+ SR +WV TMK +++ IF+KWK VE QTGR+++
Sbjct: 508 DVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKI 567
Query: 92 L---HGGLPGEDPVRDICLKQGIRR 27
L +GG DP + IC + GI R
Sbjct: 568 LRTDNGGEYKSDPFQKICQECGIVR 592
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 166 bits (421), Expect = 4e-44
Identities = 89/207 (42%), Positives = 128/207 (61%), Gaps = 10/207 (4%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSV-----DDDHTRLWHC 444
GL VTM + L+ T G+L++++G NLYY +GS ++ + D + +LWH
Sbjct: 303 GLVVTMRDGILKATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHM 362
Query: 443 RLGHATMDSLLGISRRGYIEGA-TCKLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHMH 270
RLGHA SL ++++G ++G CKL+ CEHC K + VKFGT IH G+LD VH
Sbjct: 363 RLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSD 422
Query: 269 VQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVREL 90
V GP+KT S+ G +YFV+FVD+ SR +WV TMK++N IF+KWK VE TGR+++ L
Sbjct: 423 VWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVL 482
Query: 89 ---HGGLPGEDPVRDICLKQGIRRCYS 18
+GG DP ++C GI R ++
Sbjct: 483 QTDNGGEYKSDPFLNVCQDCGIVRHFT 509
>emb|CDP17739.1| unnamed protein product [Coffea canephora]
Length = 435
Score = 159 bits (401), Expect = 4e-43
Identities = 84/198 (42%), Positives = 125/198 (63%), Gaps = 11/198 (5%)
Frame = -2
Query: 593 MEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSV------DDDHTRLWHCRLGH 432
M + L+VT G+L++++G + LYY +GS ++ + D + T+LWH RLGH
Sbjct: 1 MRDGILKVTSGALVMLKGVRKNILYYYQGSIVVGTAAATTSSSSKKDAEATKLWHMRLGH 60
Query: 431 ATMDSLLGISRRGYIEGA-TCKLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHMHVQGP 258
A SL ++++G ++G CKL+ CEHC +K + VKFGT IH G+LD VH +V GP
Sbjct: 61 AGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSNVWGP 120
Query: 257 SKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVREL---H 87
+KT S+ G YFV+F+D+ SR +WV TMK +++ IF+KWK VE QTGR+++ L +
Sbjct: 121 AKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRTDN 180
Query: 86 GGLPGEDPVRDICLKQGI 33
GG DP + I + GI
Sbjct: 181 GGEYKSDPFQKIGQECGI 198
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1032
Score = 163 bits (412), Expect = 9e-43
Identities = 87/207 (42%), Positives = 127/207 (61%), Gaps = 10/207 (4%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRN-LYYLEGSALIQARELSVDDDH----TRLWHC 444
G V E +++ G+L+VM+G + N LYY +G+ +I ++ D+ +LWH
Sbjct: 152 GFTVHAEGGVMKIISGALVVMKGVRKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHM 211
Query: 443 RLGHATMDSLLGISRRGYIEGA-TCKLDICEHCAWDKKG-VKFGTFIHQPVGLLDVVHMH 270
RLGHA SL + ++G ++ CKLD CEHC KK VKFGT IH G+LD VH
Sbjct: 212 RLGHAGERSLNLLMKQGLLKNIQACKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSD 271
Query: 269 VQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVREL 90
V GPSKT S+ G++Y+V+FVD+ SR +WV MK +++ GIF+KWKK +E QTGR+++
Sbjct: 272 VWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHF 331
Query: 89 ---HGGLPGEDPVRDICLKQGIRRCYS 18
+GG DP + C + GI R ++
Sbjct: 332 RTDNGGEYTSDPFKKACEESGIVRHFT 358
>gb|PNX57796.1| putative retrotransposon Ty1-copia subclass protein, partial
[Trifolium pratense]
Length = 285
Score = 134 bits (337), Expect = 5e-35
Identities = 72/210 (34%), Positives = 120/210 (57%), Gaps = 10/210 (4%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSVD-----DDHTRLWHC 444
G ++ +E L+V +GSL+VM+G + RNLY L G + + ++ + TR+WH
Sbjct: 4 GCKIILENGGLKVVRGSLVVMKGVRHRNLYTLMGETVTGDLAVGINRSKDQTECTRMWHM 63
Query: 443 RLGHATMDSLLGISRRGYIEGATCK-LDICEHCAWDKKG-VKFGTFIHQPVGLLDVVHMH 270
RLGH + L + +G ++ ++ CEHC + K ++F + H+ G+LD VH
Sbjct: 64 RLGHMSEKGLSLLGEKGLLKNMEKPCMEFCEHCVYGKAHRLRFSSSKHKSRGILDYVHTD 123
Query: 269 VQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVREL 90
V GP+ TS G YFV++VD+HSR+ W+ +KH+N+ F WK MVE +TGR+++ L
Sbjct: 124 VWGPAPVTSKGGSRYFVTYVDDHSRYAWIYFLKHKNEVFDNFKCWKAMVENRTGRKLKTL 183
Query: 89 ---HGGLPGEDPVRDICLKQGIRRCYSSQG 9
+G + + C ++GI R ++ +G
Sbjct: 184 RSDNGTEYTDGAFKRFCDQEGIVRHWTVRG 213
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 139 bits (349), Expect = 1e-34
Identities = 80/206 (38%), Positives = 112/206 (54%), Gaps = 9/206 (4%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSVDDDHT----RLWHCR 441
G + +E + + KGS IV+RG K NLY L+GS + + +SV D HT RLWH R
Sbjct: 345 GFKCNVEGGVMEINKGSTIVIRGIKKGNLYMLQGSTNLISESISVADKHTLDLTRLWHMR 404
Query: 440 LGHATMDSLLGISRRGYIEGATCK-LDICEHCAWDKKG-VKFGTFIHQPVGLLDVVHMHV 267
LGH + ++ +S++ + T K L CEHC K KF H LD VH +
Sbjct: 405 LGHMSERGMMVLSKQKLLRDHTVKELKFCEHCVLGKHHRSKFPKAQHTTKSTLDYVHSNC 464
Query: 266 QGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRELH 87
GPS+ S+ G YF+S +D++SR W+ MKH+NQ F +WK +VE QTG+R++ L
Sbjct: 465 WGPSRVPSLGGGRYFLSIIDDYSRMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLR 524
Query: 86 GGLPGE---DPVRDICLKQGIRRCYS 18
E D C K+GI R Y+
Sbjct: 525 TDNSLEFCSAEFNDYCKKEGIVRQYT 550
>gb|KYP35963.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 255
Score = 128 bits (322), Expect = 4e-33
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Frame = -2
Query: 590 EEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARE--LSVDDDHTRLWHCRLGHATMDS 417
E D++ + +GS +M+G + LY L+G ++ D+ RLWH RL H +
Sbjct: 76 ESDAIVIKRGSKKIMKGIRQDGLYRLQGKTIVNPANSCFVFKDNSIRLWHLRLAHISEKE 135
Query: 416 LLGISRRGYIEGATCK-LDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHMHVQGPSKTTS 243
+ ++G EG K LD CEHC + K K KF T H +LD VH + GP+KT S
Sbjct: 136 FEELHKQGLFEGTKYKKLDFCEHCLYGKQKKAKFPTGTHNTKEILDYVHYDIWGPAKTQS 195
Query: 242 VEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRELHG 84
+ G Y++SF+D SR +W+ +KH+NQ IF WK +VE QTG++V+ L G
Sbjct: 196 LGGARYYISFIDHLSRKVWIYLLKHKNQAFKIFKWWKDLVETQTGKQVKVLLG 248
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 135 bits (339), Expect = 6e-33
Identities = 81/208 (38%), Positives = 121/208 (58%), Gaps = 11/208 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGA-KVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ + K NLY+L+G+ ++ +V D D T LWH
Sbjct: 379 GYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTIL-GNVATVSDSLSNSDATNLWH 437
Query: 446 CRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH + L +S+RG ++G + KL CEHC + K K VKF T H G+LD VH
Sbjct: 438 MRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 497
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 498 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 557
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYS 18
L G+ + + C +GI R Y+
Sbjct: 558 LRTDNGMEFCSKIFKSYCKSEGIVRHYT 585
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 135 bits (339), Expect = 6e-33
Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 11/208 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L G+ ++ +V D D T LWH
Sbjct: 379 GYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL-GNVAAVSDSLSNSDATNLWH 437
Query: 446 CRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH T L +S+RG ++G + KL CEHC + K K VKF T H G+LD VH
Sbjct: 438 MRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 497
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 498 DLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 557
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYS 18
L G+ + + C +GI R Y+
Sbjct: 558 LRTDNGMEFCSKIFKSYCKSEGIVRHYT 585
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 135 bits (339), Expect = 6e-33
Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 11/208 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L G+ ++ +V D D T LWH
Sbjct: 586 GYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL-GNVAAVSDSLSNSDATNLWH 644
Query: 446 CRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH T L +S+RG ++G + KL CEHC + K K VKF T H G+LD VH
Sbjct: 645 MRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 704
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 705 DLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 764
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYS 18
L G+ + + C +GI R Y+
Sbjct: 765 LRTDNGMEFCSKIFKSYCKSEGIVRHYT 792
>gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus officinalis]
Length = 631
Score = 134 bits (337), Expect = 6e-33
Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 6/168 (3%)
Frame = -2
Query: 512 EGSALIQARELSVDD-DHTRLWHCRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWD 339
+GS I L++ + D ++LWH RLGH + +SL + ++ ++GA K++ CEHC
Sbjct: 353 KGSTEISQVALAISEADISKLWHYRLGHTSENSLQILCKQRLLKGAKSGKIEFCEHCVLG 412
Query: 338 KKG-VKFGTFIHQPVGLLDVVHMHVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRN 162
KK VKFGT IHQ G++D +H V G +K S+ G ++FV+FVD++SR WV TM ++
Sbjct: 413 KKTKVKFGTSIHQTRGIMDYMHTDVWGLTKNVSLGGQHWFVTFVDDYSRHCWVYTMTKKS 472
Query: 161 QTRGIFIKWKKMVELQTGRRVREL---HGGLPGEDPVRDICLKQGIRR 27
+ IF++WKK +ELQTGR+++ L +GG DP + +C +GI R
Sbjct: 473 EVLDIFVEWKKRLELQTGRKIKTLRSDNGGEYTSDPFQQLCRDEGIER 520
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 134 bits (338), Expect = 7e-33
Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 11/210 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L G+ ++ +V D D T LWH
Sbjct: 211 GYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL-GNVAAVSDSLSNSDATNLWH 269
Query: 446 CRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH + L +S+RG ++G + KL CEHC + K K VKF T H G+LD VH
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 330 DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYSSQ 12
L G+ + + C +GI R Y+ Q
Sbjct: 390 LRTDNGMEFCSKIFKSYCKSEGIVRHYTPQ 419
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
Length = 944
Score = 134 bits (338), Expect = 7e-33
Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 11/210 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L G+ ++ +V D D T LWH
Sbjct: 211 GYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL-GNVAAVSDSLSNSDATNLWH 269
Query: 446 CRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH + L +S+RG ++G + KL CEHC + K K VKF T H G+LD VH
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 330 DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYSSQ 12
L G+ + + C +GI R Y+ Q
Sbjct: 390 LRTDNGMEFCSKIFKSYCKSEGIVRHYTPQ 419
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 133 bits (335), Expect = 1e-32
Identities = 73/202 (36%), Positives = 117/202 (57%), Gaps = 8/202 (3%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSV---DDDHTRLWHCRL 438
G + + E L+V+KG++++++ ++ +LY L+GS + + +S D D T+LWH RL
Sbjct: 366 GCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRL 425
Query: 437 GHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHMHVQ 264
GH + + +S++G + KL+ CEHC + K K V F T H+ G LD +H +
Sbjct: 426 GHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLW 485
Query: 263 GPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRELH- 87
GPSK S G Y ++ +D+ SR +WV ++H+N+T F KWK +VE QTG++V++L
Sbjct: 486 GPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRT 545
Query: 86 -GGLP-GEDPVRDICLKQGIRR 27
GL E + C GI R
Sbjct: 546 DNGLEFCEGDFNEFCANHGIAR 567
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 133 bits (335), Expect = 2e-32
Identities = 73/202 (36%), Positives = 117/202 (57%), Gaps = 8/202 (3%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSV---DDDHTRLWHCRL 438
G + + E L+V+KG++++++ ++ +LY L+GS + + +S D D T+LWH RL
Sbjct: 70 GCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRL 129
Query: 437 GHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHMHVQ 264
GH + + +S++G + KL+ CEHC + K K V F T H+ G LD +H +
Sbjct: 130 GHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLW 189
Query: 263 GPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRELH- 87
GPSK S G Y ++ +D+ SR +WV ++H+N+T F KWK +VE QTG++V++L
Sbjct: 190 GPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRT 249
Query: 86 -GGLP-GEDPVRDICLKQGIRR 27
GL E + C GI R
Sbjct: 250 DNGLEFCEGDFNEFCANHGIAR 271
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 132 bits (332), Expect = 3e-32
Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 9/206 (4%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRGAKVRNLYYLEGSALIQARELSVDDDHT----RLWHCR 441
G + +E + ++KGS +V+RG K NLY L+GS + + +SV D HT LWH R
Sbjct: 293 GFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGSTNLISESVSVADKHTPDLTHLWHMR 352
Query: 440 LGHATMDSLLGISRRGYIEGATCK-LDICEHCAWDKKG-VKFGTFIHQPVGLLDVVHMHV 267
LGH + ++ + ++ + T K L CEHC K +KF H LD VH
Sbjct: 353 LGHMSERGMMVLRKQKLLGDHTVKELKFCEHCVVGKHHRIKFPKAQHTTKSTLDYVHSDC 412
Query: 266 QGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRELH 87
GPS+ S+ G YF+S +D++S W+ MKH+NQ F +WK +VE QTG+R++ L
Sbjct: 413 WGPSRVPSLGGGRYFLSIIDDYSGMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLR 472
Query: 86 --GGLP-GEDPVRDICLKQGIRRCYS 18
GL D C K+GI R Y+
Sbjct: 473 TDNGLEFCSAEFNDYCKKEGIVRQYT 498
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 133 bits (334), Expect = 3e-32
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 11/208 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L G+ ++ +V D D T LWH
Sbjct: 340 GYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL-GNVAAVSDSLSNSDATNLWH 398
Query: 446 CRLGHATMDSLLGISRRGYIEGATCK-LDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH + L +S+RG ++G + K L CEHC + K K VKF T H G+LD VH
Sbjct: 399 MRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 458
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 459 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 518
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYS 18
L G+ + + C +GI R Y+
Sbjct: 519 LRTDNGMDFCSKIFKSYCKSEGIVRHYT 546
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 133 bits (334), Expect = 3e-32
Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L G+ ++ +V D D T LWH
Sbjct: 288 GYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTIL-GNVAAVSDSLSNSDATNLWH 346
Query: 446 CRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH + L +S+RG ++G + KL CEHC + K K VKF T H G+LD VH
Sbjct: 347 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 406
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 407 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 466
Query: 92 L---HGGLPGEDPVRDICLKQGIRRCYS 18
L +G + C +GI R Y+
Sbjct: 467 LRTDNGMELCSKIFKSYCKSEGIVRHYT 494
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 133 bits (334), Expect = 3e-32
Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 11/208 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L G+ ++ +V D D T LWH
Sbjct: 394 GYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL-GNVAAVSDSLSNSDATNLWH 452
Query: 446 CRLGHATMDSLLGISRRGYIEGATCK-LDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH + L +S+RG ++G + K L CEHC + K K VKF T H G+LD VH
Sbjct: 453 MRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 512
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ VD++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 513 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 572
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYS 18
L G+ + + C +GI R Y+
Sbjct: 573 LRTDNGMDFCSKIFKSYCKSEGIVRHYT 600
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
Length = 1037
Score = 132 bits (331), Expect = 6e-32
Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 11/208 (5%)
Frame = -2
Query: 608 GLRVTMEEDSLRVTKGSLIVMRG-AKVRNLYYLEGSALIQARELSVDD-----DHTRLWH 447
G + + + L+VTKGSL+VM+ K NLY+L+G+ ++ +V D D T LWH
Sbjct: 196 GYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTIL-GNVATVSDSLSNSDATNLWH 254
Query: 446 CRLGHATMDSLLGISRRGYIEGATC-KLDICEHCAWDK-KGVKFGTFIHQPVGLLDVVHM 273
RLGH + L +S RG ++G + KL CEHC + K K VKF T H G+LD VH
Sbjct: 255 MRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 314
Query: 272 HVQGPSKTTSVEGDNYFVSFVDEHSRFMWVATMKHRNQTRGIFIKWKKMVELQTGRRVRE 93
+ GP++ TS G Y ++ V+++SR +W +KH+ Q +F +WK MVE QT R+V+
Sbjct: 315 DLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 374
Query: 92 LH--GGLPGEDPV-RDICLKQGIRRCYS 18
L G+ + + C +GI R Y+
Sbjct: 375 LRTDNGMEFCSKIFKSYCKSEGIMRHYT 402