BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00024316
         (686 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OMO63131.1| Integrase, catalytic core [Corchorus capsularis]        64   4e-08
gb|KYP57490.1| Retrovirus-related Pol polyprotein from transposo...    62   1e-07
gb|OMO56344.1| Integrase, catalytic core [Corchorus capsularis]        62   1e-07
gb|OMO50708.1| Zinc finger, CCHC-type [Corchorus capsularis]           62   2e-07
gb|OMO83306.1| Integrase, catalytic core [Corchorus capsularis]        60   7e-07
gb|KYP74424.1| Retrovirus-related Pol polyprotein from transposo...    59   3e-06

>gb|OMO63131.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1000

 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
 Frame = +1

Query: 385 ASFASPPTSGMNITDSSAAAPSSGMNDLWIFDSDCSFHMTRNASLLSS-VDTSTPLPTIH 561
           +S  S    G+N   SS  +PS      W+ DS  S+HMT ++S+L + +D S PL  I 
Sbjct: 257 SSAMSAVDQGINRAPSSGTSPSP-----WVLDSGASYHMTSDSSILENCLDLSQPL-DIQ 310

Query: 562 TADGQPLSISQCGYITPRTDPSGRLTLGPVLVSPQLCLNLI 684
           TA+G  + IS+ G +T ++ PSG+ ++  +  +PQL  NL+
Sbjct: 311 TANGSLMQISKVGSVTTKSYPSGKFSIPNIFYAPQLSANLL 351


>gb|KYP57490.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 362

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 51/142 (35%), Positives = 66/142 (46%)
 Frame = +1

Query: 259 PNSTSSVVPSTISDVTLQAIEDLRRRLDVLEHIAPIALSGFAASFASPPTSGMNITDSSA 438
           PN+TSSV  S+++DVT+ A +      D+L+  A       A   ASP T+  +  +  A
Sbjct: 154 PNTTSSVGSSSLTDVTISASD----YQDLLQLRA-------AQQSASPATTVAHSGNPVA 202

Query: 439 AAPSSGMNDLWIFDSDCSFHMTRNASLLSSVDTSTPLPTIHTADGQPLSISQCGYITPRT 618
               S     WI DSD S HMT N S  S +  S  LP +  ADG  + +   G I P T
Sbjct: 203 FMSQSPSLGPWILDSDASDHMTGNQSYFSKLSFSDSLPPVTLADGSQIKVHGIGQIHPLT 262

Query: 619 DPSGRLTLGPVLVSPQLCLNLI 684
                L L  VL  P    NLI
Sbjct: 263 ----HLPLHSVLFVPGCPFNLI 280


>gb|OMO56344.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1095

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
 Frame = +1

Query: 385 ASFASPPTSGMNITDSSAAAPSSGMNDLWIFDSDCSFHMTRNASLLSS-VDTSTPLPTIH 561
           +S  S    G+N   SS  +PS      W+ DS  S+HMT ++S+L + +D S PL  I 
Sbjct: 336 SSAMSAVDQGINRALSSGTSPSP-----WVLDSGASYHMTSDSSILENCLDLSQPL-DIQ 389

Query: 562 TADGQPLSISQCGYITPRTDPSGRLTLGPVLVSPQLCLNLI 684
           TA+G  + IS+ G +T ++ PSG+ ++  +  +PQL  NL+
Sbjct: 390 TANGPLMQISKVGSVTTKSYPSGKFSIPNIFYAPQLSANLL 430


>gb|OMO50708.1| Zinc finger, CCHC-type [Corchorus capsularis]
          Length = 2413

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
 Frame = +1

Query: 250  DINPNSTSSVVPSTISDVTLQAIE-DLRRRLDVLEHIAPIALSGFAASFASPPTSGMNIT 426
            ++N +   S++   I  +    I  DL + + +      +A S    S  S    G+N  
Sbjct: 1383 NVNHDDLESIIARQIQQIMGSCIRNDLAKEICLTLQRKDLANS----SAMSAVDQGINRA 1438

Query: 427  DSSAAAPSSGMNDLWIFDSDCSFHMTRNASLLSS-VDTSTPLPTIHTADGQPLSISQCGY 603
             SS  +PS      W+ DS  S+HMT ++S+L + +D S PL  I  A+G  + IS+ G 
Sbjct: 1439 PSSGTSPSP-----WVLDSGASYHMTSDSSILENCLDLSQPL-DIQIANGSLMQISKVGS 1492

Query: 604  ITPRTDPSGRLTLGPVLVSPQLCLNLI 684
            +T ++ PSG+ ++  +  +PQL  NL+
Sbjct: 1493 VTTKSYPSGKFSIPNIFYAPQLSANLL 1519


>gb|OMO83306.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1165

 Score = 60.5 bits (145), Expect = 7e-07
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
 Frame = +1

Query: 409 SGMNITDSSA----AAPSSGMNDLWIFDSDCSFHMTRNASLLSSVDTSTPLPTIHTADGQ 576
           S M++ D        +P SG N  WI DS  S HMT N+S L +    +    IH A+G 
Sbjct: 375 SAMSVADQGTNKILPSPPSG-NSPWILDSGASHHMTSNSSFLENCSHLSQPIDIHIANGS 433

Query: 577 PLSISQCGYITPRTDPSGRLTLGPVLVSPQLCLNLI 684
            + +S+ G IT ++ P G+  +  VL +PQL +NL+
Sbjct: 434 SMQVSKVGSITTKSYPLGKFYVPNVLYAPQLSVNLL 469


>gb|KYP74424.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 584

 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 49/142 (34%), Positives = 64/142 (45%)
 Frame = +1

Query: 259 PNSTSSVVPSTISDVTLQAIEDLRRRLDVLEHIAPIALSGFAASFASPPTSGMNITDSSA 438
           PN+TSS   S+++DVT+ A +      D+L+  A       A  FASP T+  +  +  A
Sbjct: 270 PNTTSSAGSSSLTDVTISASD----YQDLLQLRA-------AQQFASPATTVAHSGNPVA 318

Query: 439 AAPSSGMNDLWIFDSDCSFHMTRNASLLSSVDTSTPLPTIHTADGQPLSISQCGYITPRT 618
               S     WI DS  S HMT N S  S +  S  LP +  ADG  + +   G I    
Sbjct: 319 FMSQSPSLGPWILDSGASDHMTGNQSYFSKLSFSDSLPPVTLADGSQIKVHGIGQI---- 374

Query: 619 DPSGRLTLGPVLVSPQLCLNLI 684
            P   L L  VL  P    NLI
Sbjct: 375 HPLPHLPLHSVLFVPGCPFNLI 396